HEADER TRANSFERASE 11-AUG-22 8E1S TITLE ASP1 KINASE IN COMPLEX WITH ADPNP MN IP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL- COMPND 3 PENTAKISPHOSPHATE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CORTICAL ACTIN CYTOSKELETON PROTEIN ASP1,INSP6 AND PP-IP5 COMPND 6 KINASE; COMPND 7 EC: 2.7.4.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: ASP1, VIP1, SPCC1672.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INOSITOL PYROPHOSPHOSPHATE IPP KINASE FISSION YEAST, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,S.SHUMAN,B.BENJAMIN REVDAT 4 25-OCT-23 8E1S 1 REMARK REVDAT 3 04-JAN-23 8E1S 1 JRNL REVDAT 2 21-DEC-22 8E1S 1 JRNL REVDAT 1 30-NOV-22 8E1S 0 JRNL AUTH B.BENJAMIN,Y.GOLDGUR,N.JORK,H.J.JESSEN,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURES OF FISSION YEAST INOSITOL PYROPHOSPHATE KINASE JRNL TITL 2 ASP1 IN LIGAND-FREE, SUBSTRATE-BOUND, AND PRODUCT-BOUND JRNL TITL 3 STATES. JRNL REF MBIO V. 13 08722 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36468882 JRNL DOI 10.1128/MBIO.03087-22 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 75392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 4.1300 0.99 5369 147 0.1678 0.1866 REMARK 3 2 4.1300 - 3.2800 1.00 5314 149 0.1527 0.1823 REMARK 3 3 3.2800 - 2.8700 0.98 5185 145 0.1713 0.1921 REMARK 3 4 2.8700 - 2.6000 0.99 5289 154 0.1767 0.1918 REMARK 3 5 2.6000 - 2.4200 0.99 5260 141 0.1793 0.2147 REMARK 3 6 2.4200 - 2.2700 0.99 5217 151 0.1752 0.2272 REMARK 3 7 2.2700 - 2.1600 0.99 5285 137 0.1667 0.2070 REMARK 3 8 2.1600 - 2.0700 0.98 5183 150 0.1746 0.2033 REMARK 3 9 2.0700 - 1.9900 0.99 5221 147 0.1871 0.2212 REMARK 3 10 1.9900 - 1.9200 0.99 5212 125 0.1964 0.2423 REMARK 3 11 1.9200 - 1.8600 0.99 5255 152 0.1955 0.2279 REMARK 3 12 1.8600 - 1.8100 0.99 5260 142 0.2133 0.2777 REMARK 3 13 1.8100 - 1.7600 0.99 5164 154 0.2433 0.2861 REMARK 3 14 1.7600 - 1.7200 0.97 5150 134 0.3015 0.3373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3789 -34.5436 5.8939 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.2204 REMARK 3 T33: 0.3451 T12: -0.0109 REMARK 3 T13: 0.0417 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.3908 L22: 0.2292 REMARK 3 L33: 0.1838 L12: -0.1375 REMARK 3 L13: -0.1211 L23: -0.0874 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0266 S13: -0.5824 REMARK 3 S21: 0.2187 S22: 0.0442 S23: -0.2760 REMARK 3 S31: 0.4108 S32: -0.0034 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6456 -22.0795 1.2659 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.1651 REMARK 3 T33: 0.2755 T12: 0.0082 REMARK 3 T13: 0.0505 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4719 L22: 0.4962 REMARK 3 L33: 0.5614 L12: -0.0010 REMARK 3 L13: -0.4439 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0509 S13: 0.0411 REMARK 3 S21: -0.1770 S22: 0.0583 S23: -0.2617 REMARK 3 S31: 0.0057 S32: 0.0470 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4937 -5.2708 14.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1610 REMARK 3 T33: 0.1438 T12: 0.0363 REMARK 3 T13: 0.0015 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.2722 L22: 1.0705 REMARK 3 L33: 1.0748 L12: 0.0781 REMARK 3 L13: -0.1724 L23: 0.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0292 S13: -0.0137 REMARK 3 S21: -0.0152 S22: 0.0193 S23: -0.0241 REMARK 3 S31: -0.1129 S32: -0.0807 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9194 -24.4992 6.9688 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1962 REMARK 3 T33: 0.2092 T12: -0.0312 REMARK 3 T13: 0.0150 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5538 L22: 0.5668 REMARK 3 L33: 0.3424 L12: 0.0578 REMARK 3 L13: 0.1208 L23: -0.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.0284 S13: -0.1364 REMARK 3 S21: -0.0531 S22: 0.0390 S23: 0.0996 REMARK 3 S31: 0.0930 S32: -0.2116 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1939 -24.7355 37.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.2167 T22: 0.1658 REMARK 3 T33: 0.1691 T12: -0.0410 REMARK 3 T13: -0.0373 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.7492 L22: 1.4159 REMARK 3 L33: 0.8781 L12: 0.1418 REMARK 3 L13: -0.0560 L23: 0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.0401 S13: 0.1208 REMARK 3 S21: 0.0172 S22: 0.0120 S23: 0.0455 REMARK 3 S31: -0.2419 S32: 0.0649 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7738 -48.0842 26.4658 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1510 REMARK 3 T33: 0.1445 T12: -0.0215 REMARK 3 T13: -0.0192 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5577 L22: 0.6081 REMARK 3 L33: 0.9510 L12: -0.1298 REMARK 3 L13: -0.5871 L23: 0.4462 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0085 S13: -0.0333 REMARK 3 S21: -0.0748 S22: 0.0252 S23: -0.0167 REMARK 3 S31: -0.0203 S32: 0.0573 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3005 -46.7512 25.7618 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2921 REMARK 3 T33: 0.2575 T12: -0.0366 REMARK 3 T13: -0.0248 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.2388 L22: 0.2526 REMARK 3 L33: 0.1789 L12: -0.0166 REMARK 3 L13: -0.0111 L23: 0.1164 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: 0.2053 S13: -0.0319 REMARK 3 S21: -0.1082 S22: 0.0212 S23: -0.1480 REMARK 3 S31: -0.3059 S32: -0.2476 S33: 0.0046 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1562 -42.3034 34.2474 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1912 REMARK 3 T33: 0.1924 T12: -0.0282 REMARK 3 T13: -0.0179 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 0.5327 REMARK 3 L33: 0.2979 L12: 0.3500 REMARK 3 L13: 0.0555 L23: 0.3024 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0318 S13: -0.0462 REMARK 3 S21: 0.0258 S22: -0.0090 S23: 0.1098 REMARK 3 S31: 0.0206 S32: -0.0079 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8E1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 5.9), 0.025 M REMARK 280 NH4OAC, AND 17% PEG 10,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.88750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 ARG A 363 REMARK 465 HIS A 364 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 ARG B 32 REMARK 465 VAL B 278 REMARK 465 VAL B 279 REMARK 465 ASP B 280 REMARK 465 GLY B 281 REMARK 465 ILE B 282 REMARK 465 VAL B 283 REMARK 465 ARG B 284 REMARK 465 ARG B 285 REMARK 465 ASN B 286 REMARK 465 PRO B 287 REMARK 465 HIS B 288 REMARK 465 GLY B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 ILE B 292 REMARK 465 ARG B 363 REMARK 465 HIS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 680 O HOH A 810 1.81 REMARK 500 O HOH B 723 O HOH B 745 1.92 REMARK 500 O HOH A 874 O HOH A 875 1.94 REMARK 500 O HOH B 713 O HOH B 716 1.94 REMARK 500 O HOH A 742 O HOH A 858 1.95 REMARK 500 O HOH A 829 O HOH A 859 1.98 REMARK 500 O HOH A 796 O HOH A 797 2.00 REMARK 500 O HOH A 643 O HOH A 649 2.01 REMARK 500 O HOH A 832 O HOH A 869 2.02 REMARK 500 O HOH A 760 O HOH A 805 2.04 REMARK 500 SG CYS A 237 O HOH A 806 2.06 REMARK 500 O HOH A 625 O HOH A 802 2.06 REMARK 500 O HOH B 421 O HOH B 564 2.06 REMARK 500 O HOH B 614 O HOH B 738 2.10 REMARK 500 O HOH B 577 O HOH B 693 2.12 REMARK 500 O22 IHP A 402 O HOH A 501 2.12 REMARK 500 O HOH A 631 O HOH A 758 2.13 REMARK 500 O HOH A 751 O HOH A 847 2.14 REMARK 500 OD1 ASP A 258 O HOH A 502 2.14 REMARK 500 O HOH A 758 O HOH A 843 2.15 REMARK 500 O HOH A 714 O HOH A 839 2.16 REMARK 500 O THR B 168 O HOH B 401 2.17 REMARK 500 O HOH A 675 O HOH A 698 2.18 REMARK 500 O HOH B 623 O HOH B 626 2.18 REMARK 500 O HOH A 536 O HOH B 555 2.18 REMARK 500 OD1 ASN B 349 NH2 ARG B 352 2.19 REMARK 500 NE2 GLN B 356 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 797 O HOH B 693 1455 1.80 REMARK 500 O HOH A 667 O HOH B 509 1455 2.00 REMARK 500 O HOH B 652 O HOH B 672 1455 2.05 REMARK 500 O HOH A 842 O HOH B 688 1455 2.06 REMARK 500 O HOH A 796 O HOH B 693 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 146 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 322 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 226 -128.46 55.44 REMARK 500 CYS A 237 -61.94 -147.14 REMARK 500 CYS B 237 -62.04 -145.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 874 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD2 REMARK 620 2 ASP A 333 OD2 90.1 REMARK 620 3 ANP A 401 PG 123.9 87.9 REMARK 620 4 ANP A 401 O1G 87.0 85.2 37.0 REMARK 620 5 ANP A 401 N3B 166.3 92.5 42.8 79.8 REMARK 620 6 ANP A 401 O2A 103.4 94.3 132.7 169.7 89.9 REMARK 620 7 HOH A 612 O 90.1 172.0 85.4 86.8 85.5 93.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD1 REMARK 620 2 ASP A 333 OD2 50.5 REMARK 620 3 ASN A 335 OD1 79.7 87.0 REMARK 620 4 ANP A 401 O3G 155.1 104.6 101.6 REMARK 620 5 ANP A 401 O2B 94.0 92.3 172.4 86.0 REMARK 620 6 HOH A 523 O 94.6 144.7 91.3 110.3 84.9 REMARK 620 N 1 2 3 4 5 DBREF 8E1S A 31 364 UNP O74429 VIP1_SCHPO 31 364 DBREF 8E1S B 31 364 UNP O74429 VIP1_SCHPO 31 364 SEQADV 8E1S SER A 30 UNP O74429 EXPRESSION TAG SEQADV 8E1S SER B 30 UNP O74429 EXPRESSION TAG SEQRES 1 A 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 A 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 A 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 A 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 A 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 A 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 A 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 A 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 A 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 A 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 A 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 A 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 A 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 A 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 A 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 A 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 A 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 A 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 A 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 A 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 A 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 A 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 A 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 A 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 A 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 A 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS SEQRES 1 B 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 B 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 B 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 B 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 B 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 B 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 B 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 B 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 B 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 B 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 B 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 B 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 B 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 B 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 B 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 B 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 B 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 B 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 B 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 B 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 B 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 B 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 B 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 B 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 B 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 B 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS HET ANP A 401 31 HET IHP A 402 72 HET MN A 403 1 HET MN A 404 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM MN MANGANESE (II) ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 IHP C6 H18 O24 P6 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *725(H2 O) HELIX 1 AA1 MET A 40 ARG A 45 1 6 HELIX 2 AA2 SER A 46 ALA A 58 1 13 HELIX 3 AA3 GLY A 68 GLU A 75 1 8 HELIX 4 AA4 ALA A 76 TRP A 80 5 5 HELIX 5 AA5 PRO A 95 LYS A 107 1 13 HELIX 6 AA6 VAL A 114 TRP A 121 5 8 HELIX 7 AA7 ASP A 122 ILE A 133 1 12 HELIX 8 AA8 ASN A 152 GLY A 164 1 13 HELIX 9 AA9 PRO A 211 GLY A 215 5 5 HELIX 10 AB1 VAL A 253 ASN A 255 5 3 HELIX 11 AB2 SER A 299 PHE A 313 1 15 HELIX 12 AB3 ASN A 343 GLU A 362 1 20 HELIX 13 AB4 MET B 40 ARG B 45 1 6 HELIX 14 AB5 SER B 46 ALA B 58 1 13 HELIX 15 AB6 GLY B 68 GLU B 75 1 8 HELIX 16 AB7 ALA B 76 TRP B 80 5 5 HELIX 17 AB8 PRO B 95 LYS B 107 1 13 HELIX 18 AB9 VAL B 114 TRP B 121 5 8 HELIX 19 AC1 ASP B 122 ILE B 133 1 12 HELIX 20 AC2 ASN B 152 GLY B 164 1 13 HELIX 21 AC3 PRO B 211 GLY B 215 5 5 HELIX 22 AC4 SER B 299 PHE B 313 1 15 HELIX 23 AC5 ASN B 343 GLU B 362 1 20 SHEET 1 AA1 4 GLU A 63 VAL A 66 0 SHEET 2 AA1 4 VAL A 34 CYS A 38 1 N VAL A 35 O GLU A 63 SHEET 3 AA1 4 TYR A 85 CYS A 88 1 O TYR A 85 N GLY A 36 SHEET 4 AA1 4 PHE A 109 CYS A 110 1 O PHE A 109 N LEU A 86 SHEET 1 AA2 6 ARG A 140 CYS A 143 0 SHEET 2 AA2 6 PHE A 245 GLU A 249 -1 O TYR A 247 N LEU A 141 SHEET 3 AA2 6 TYR A 194 PRO A 198 -1 N VAL A 195 O GLU A 248 SHEET 4 AA2 6 TYR A 207 TYR A 209 -1 O TYR A 207 N GLU A 196 SHEET 5 AA2 6 GLY A 218 VAL A 225 -1 O ARG A 219 N ILE A 208 SHEET 6 AA2 6 LYS A 228 ASP A 233 -1 O ASP A 231 N LYS A 220 SHEET 1 AA3 3 VAL A 175 ASP A 179 0 SHEET 2 AA3 3 THR A 182 VAL A 185 -1 O SER A 184 N LYS A 176 SHEET 3 AA3 3 LYS A 188 LYS A 191 -1 O ILE A 190 N LEU A 183 SHEET 1 AA4 5 PHE A 294 THR A 296 0 SHEET 2 AA4 5 SER A 269 LYS A 275 -1 N THR A 273 O PHE A 294 SHEET 3 AA4 5 GLU A 257 VAL A 264 -1 N LYS A 260 O GLU A 272 SHEET 4 AA4 5 VAL A 317 VAL A 325 -1 O PHE A 320 N VAL A 261 SHEET 5 AA4 5 GLN A 328 GLY A 336 -1 O TYR A 330 N LEU A 323 SHEET 1 AA5 4 GLU B 63 VAL B 66 0 SHEET 2 AA5 4 VAL B 34 CYS B 38 1 N VAL B 35 O GLU B 63 SHEET 3 AA5 4 TYR B 85 CYS B 88 1 O ILE B 87 N CYS B 38 SHEET 4 AA5 4 PHE B 109 CYS B 110 1 O PHE B 109 N LEU B 86 SHEET 1 AA6 6 ARG B 140 CYS B 143 0 SHEET 2 AA6 6 PHE B 245 GLU B 249 -1 O PHE B 245 N CYS B 143 SHEET 3 AA6 6 TYR B 194 PRO B 198 -1 N LYS B 197 O ILE B 246 SHEET 4 AA6 6 TYR B 207 TYR B 209 -1 O TYR B 207 N GLU B 196 SHEET 5 AA6 6 GLY B 218 LYS B 220 -1 O ARG B 219 N ILE B 208 SHEET 6 AA6 6 TYR B 232 ASP B 233 -1 O ASP B 233 N GLY B 218 SHEET 1 AA7 3 VAL B 175 ASP B 179 0 SHEET 2 AA7 3 THR B 182 VAL B 185 -1 O SER B 184 N LYS B 176 SHEET 3 AA7 3 LYS B 188 LYS B 191 -1 O LYS B 188 N VAL B 185 SHEET 1 AA8 5 PHE B 294 ILE B 295 0 SHEET 2 AA8 5 SER B 269 THR B 273 -1 N THR B 273 O PHE B 294 SHEET 3 AA8 5 GLU B 257 VAL B 264 -1 N LYS B 260 O GLU B 272 SHEET 4 AA8 5 VAL B 317 VAL B 325 -1 O CYS B 318 N THR B 263 SHEET 5 AA8 5 GLN B 328 GLY B 336 -1 O ILE B 332 N ASP B 321 LINK OD2 ASP A 321 MN MN A 403 1555 1555 2.03 LINK OD2 ASP A 333 MN MN A 403 1555 1555 2.21 LINK OD1 ASP A 333 MN MN A 404 1555 1555 2.76 LINK OD2 ASP A 333 MN MN A 404 1555 1555 2.22 LINK OD1 ASN A 335 MN MN A 404 1555 1555 2.39 LINK PG ANP A 401 MN MN A 403 1555 1555 2.52 LINK O1G ANP A 401 MN MN A 403 1555 1555 2.16 LINK N3B ANP A 401 MN MN A 403 1555 1555 1.89 LINK O2A ANP A 401 MN MN A 403 1555 1555 1.95 LINK O3G ANP A 401 MN MN A 404 1555 1555 2.30 LINK O2B ANP A 401 MN MN A 404 1555 1555 2.35 LINK MN MN A 403 O HOH A 612 1555 1555 2.16 LINK MN MN A 404 O HOH A 523 1555 1555 2.21 CISPEP 1 LYS A 192 PRO A 193 0 3.04 CISPEP 2 LYS B 192 PRO B 193 0 3.72 CRYST1 48.076 87.775 86.048 90.00 94.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020800 0.000000 0.001766 0.00000 SCALE2 0.000000 0.011393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011663 0.00000