HEADER TRANSFERASE 11-AUG-22 8E1V TITLE ASP1 KINASE IN COMPLEX WITH ADPNP MG IP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL- COMPND 3 PENTAKISPHOSPHATE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CORTICAL ACTIN CYTOSKELETON PROTEIN ASP1,INSP6 AND PP-IP5 COMPND 6 KINASE; COMPND 7 EC: 2.7.4.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: ASP1, VIP1, SPCC1672.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INOSITOL PYROPHOSPHOSPHATE IPP KINASE FISSION YEAST, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GOLDGUR,S.SHUMAN,B.BENJAMIN REVDAT 4 25-OCT-23 8E1V 1 REMARK REVDAT 3 04-JAN-23 8E1V 1 JRNL REVDAT 2 21-DEC-22 8E1V 1 JRNL REVDAT 1 30-NOV-22 8E1V 0 JRNL AUTH B.BENJAMIN,Y.GOLDGUR,N.JORK,H.J.JESSEN,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURES OF FISSION YEAST INOSITOL PYROPHOSPHATE KINASE JRNL TITL 2 ASP1 IN LIGAND-FREE, SUBSTRATE-BOUND, AND PRODUCT-BOUND JRNL TITL 3 STATES. JRNL REF MBIO V. 13 08722 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36468882 JRNL DOI 10.1128/MBIO.03087-22 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 103799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5000 - 5.7000 0.98 3807 150 0.1811 0.1739 REMARK 3 2 5.7000 - 4.5200 0.95 3655 139 0.1589 0.1691 REMARK 3 3 4.5200 - 3.9500 0.97 3730 136 0.1481 0.1723 REMARK 3 4 3.9500 - 3.5900 0.97 3796 145 0.1691 0.1931 REMARK 3 5 3.5900 - 3.3300 0.97 3766 144 0.1746 0.2167 REMARK 3 6 3.3300 - 3.1400 0.97 3748 145 0.1902 0.2226 REMARK 3 7 3.1400 - 2.9800 0.89 3436 130 0.1999 0.2203 REMARK 3 8 2.9800 - 2.8500 0.93 3623 139 0.2066 0.2200 REMARK 3 9 2.8500 - 2.7400 0.95 3701 141 0.2067 0.2415 REMARK 3 10 2.7400 - 2.6500 0.96 3694 145 0.2116 0.3013 REMARK 3 11 2.6500 - 2.5600 0.96 3794 146 0.2091 0.2208 REMARK 3 12 2.5600 - 2.4900 0.97 3669 140 0.2167 0.2848 REMARK 3 13 2.4900 - 2.4200 0.97 3779 149 0.2111 0.2804 REMARK 3 14 2.4200 - 2.3700 0.98 3793 145 0.2175 0.2508 REMARK 3 15 2.3700 - 2.3100 0.98 3771 143 0.2158 0.2679 REMARK 3 16 2.3100 - 2.2600 0.98 3776 145 0.2255 0.2198 REMARK 3 17 2.2600 - 2.2200 0.99 3843 146 0.2189 0.2647 REMARK 3 18 2.2200 - 2.1800 0.99 3824 146 0.2295 0.2973 REMARK 3 19 2.1800 - 2.1400 0.92 3569 140 0.2378 0.2663 REMARK 3 20 2.1400 - 2.1000 0.91 3534 138 0.2399 0.2878 REMARK 3 21 2.1000 - 2.0700 0.95 3611 142 0.2436 0.2559 REMARK 3 22 2.0700 - 2.0300 0.96 3802 143 0.2549 0.3048 REMARK 3 23 2.0300 - 2.0000 0.96 3667 135 0.2693 0.2711 REMARK 3 24 2.0000 - 1.9800 0.96 3702 140 0.2755 0.2855 REMARK 3 25 1.9800 - 1.9500 0.96 3783 146 0.2874 0.3418 REMARK 3 26 1.9500 - 1.9200 0.97 3713 142 0.3231 0.3436 REMARK 3 27 1.9200 - 1.9000 0.88 3388 125 0.3353 0.3406 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1274 -34.1431 7.1456 REMARK 3 T TENSOR REMARK 3 T11: 0.4567 T22: 0.2734 REMARK 3 T33: 0.6438 T12: -0.0090 REMARK 3 T13: 0.0023 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 0.7197 L22: 0.3164 REMARK 3 L33: 0.2165 L12: 0.0501 REMARK 3 L13: -0.3684 L23: 0.2506 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: -0.1890 S13: -1.1369 REMARK 3 S21: 0.2710 S22: 0.0467 S23: -0.9969 REMARK 3 S31: 0.5611 S32: 0.1653 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5641 -22.1363 1.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2175 REMARK 3 T33: 0.5822 T12: 0.0288 REMARK 3 T13: 0.0545 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.5125 REMARK 3 L33: 1.0499 L12: -0.2478 REMARK 3 L13: -0.7343 L23: 0.3393 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: -0.0044 S13: -0.2616 REMARK 3 S21: -0.1151 S22: 0.1291 S23: -0.6126 REMARK 3 S31: 0.0445 S32: 0.1983 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5382 0.9191 14.2734 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1897 REMARK 3 T33: 0.2133 T12: 0.0320 REMARK 3 T13: 0.0223 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.8109 L22: 0.8800 REMARK 3 L33: 1.5111 L12: -0.1692 REMARK 3 L13: -0.2753 L23: 0.7273 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.0622 S13: 0.0095 REMARK 3 S21: -0.0530 S22: 0.0742 S23: -0.1726 REMARK 3 S31: -0.1163 S32: 0.0538 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9371 -14.9083 19.8155 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.2808 REMARK 3 T33: 0.2200 T12: -0.0116 REMARK 3 T13: -0.0029 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.7309 L22: 0.8612 REMARK 3 L33: 0.6035 L12: -0.0106 REMARK 3 L13: -0.0584 L23: -0.4155 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.1653 S13: -0.1151 REMARK 3 S21: 0.1235 S22: 0.0333 S23: -0.0007 REMARK 3 S31: -0.0524 S32: -0.2280 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4715 -20.2047 6.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.1881 REMARK 3 T33: 0.2031 T12: -0.0024 REMARK 3 T13: -0.0081 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.2907 L22: 1.1443 REMARK 3 L33: 1.2033 L12: 0.6934 REMARK 3 L13: -0.4541 L23: 0.7561 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0270 S13: -0.0876 REMARK 3 S21: -0.0750 S22: -0.2191 S23: -0.0594 REMARK 3 S31: -0.0358 S32: -0.3763 S33: -0.0112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5264 -24.5488 38.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.1865 REMARK 3 T33: 0.1629 T12: -0.0183 REMARK 3 T13: -0.0272 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5254 L22: 1.1972 REMARK 3 L33: 0.9426 L12: 0.2224 REMARK 3 L13: -0.4370 L23: 0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.0042 S13: 0.1031 REMARK 3 S21: -0.0075 S22: 0.0453 S23: 0.1110 REMARK 3 S31: -0.1734 S32: 0.0387 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2042 -45.7010 39.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.2394 REMARK 3 T33: 0.1944 T12: 0.0080 REMARK 3 T13: -0.0087 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6859 L22: 0.3085 REMARK 3 L33: 0.5068 L12: -0.1827 REMARK 3 L13: -0.5479 L23: 0.1986 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.1938 S13: -0.2070 REMARK 3 S21: 0.0737 S22: 0.0510 S23: -0.0877 REMARK 3 S31: 0.0392 S32: 0.1978 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7097 -48.8111 20.8186 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1895 REMARK 3 T33: 0.1702 T12: -0.0023 REMARK 3 T13: 0.0089 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.9081 L22: 0.4029 REMARK 3 L33: 1.5975 L12: -0.0408 REMARK 3 L13: 0.1784 L23: -0.0314 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0277 S13: -0.0397 REMARK 3 S21: -0.0500 S22: 0.1317 S23: -0.0543 REMARK 3 S31: -0.0663 S32: 0.1375 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4346 -48.0763 25.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.3589 REMARK 3 T33: 0.2722 T12: 0.0104 REMARK 3 T13: -0.0450 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 0.4677 L22: 0.3968 REMARK 3 L33: 0.0434 L12: 0.2903 REMARK 3 L13: 0.1797 L23: 0.0743 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.3069 S13: -0.0652 REMARK 3 S21: -0.0389 S22: 0.0119 S23: 0.0038 REMARK 3 S31: 0.0273 S32: 0.0405 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4491 -42.0779 34.3878 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.2287 REMARK 3 T33: 0.2128 T12: -0.0009 REMARK 3 T13: -0.0162 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.1895 L22: 1.2725 REMARK 3 L33: 0.1844 L12: 0.3359 REMARK 3 L13: -0.1048 L23: 0.4707 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: 0.1277 S13: -0.0560 REMARK 3 S21: -0.0401 S22: 0.0180 S23: 0.1078 REMARK 3 S31: -0.0066 S32: -0.0119 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103799 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8E1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 5.5), 0.1 M NH4OAC, REMARK 280 17% PEG 10,000., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 363 REMARK 465 HIS A 364 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 ARG B 32 REMARK 465 LYS B 275 REMARK 465 SER B 276 REMARK 465 PRO B 277 REMARK 465 VAL B 278 REMARK 465 VAL B 279 REMARK 465 ASP B 280 REMARK 465 GLY B 281 REMARK 465 ILE B 282 REMARK 465 VAL B 283 REMARK 465 ARG B 284 REMARK 465 ARG B 285 REMARK 465 ASN B 286 REMARK 465 PRO B 287 REMARK 465 HIS B 288 REMARK 465 GLY B 289 REMARK 465 LYS B 290 REMARK 465 GLU B 291 REMARK 465 ILE B 292 REMARK 465 ARG B 293 REMARK 465 PHE B 294 REMARK 465 ARG B 363 REMARK 465 HIS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 50 O44 IHP B 501 1.31 REMARK 500 O HOH B 825 O HOH B 834 2.08 REMARK 500 O HOH B 819 O HOH B 852 2.08 REMARK 500 O HOH A 623 O HOH A 656 2.09 REMARK 500 O HOH B 681 O HOH B 815 2.11 REMARK 500 NZ LYS A 162 O HOH A 501 2.11 REMARK 500 NZ LYS B 341 O HOH B 601 2.12 REMARK 500 O HOH B 829 O HOH B 850 2.13 REMARK 500 OD1 ASP A 254 O HOH A 502 2.14 REMARK 500 O HOH B 747 O HOH B 815 2.14 REMARK 500 OD2 ASP B 342 O HOH B 601 2.14 REMARK 500 O HOH B 748 O HOH B 820 2.17 REMARK 500 O HOH A 680 O HOH A 693 2.19 REMARK 500 O GLU B 75 O HOH B 602 2.19 REMARK 500 OD1 ASN A 79 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 675 O HOH B 786 2655 2.15 REMARK 500 O HOH A 644 O HOH A 690 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 146 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 -5.40 89.69 REMARK 500 ALA A 226 -123.44 54.41 REMARK 500 CYS A 237 -66.29 -149.21 REMARK 500 SER A 326 60.20 60.71 REMARK 500 ASN B 227 37.67 -152.47 REMARK 500 CYS B 237 -57.67 -144.13 REMARK 500 ARG B 324 63.52 -106.89 REMARK 500 SER B 326 -107.78 42.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 145 ASP A 146 -149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 854 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD2 REMARK 620 2 ASP A 333 OD2 95.7 REMARK 620 3 ANP A 401 O1G 90.9 92.1 REMARK 620 4 ANP A 401 O2A 107.5 91.4 160.9 REMARK 620 5 HOH A 568 O 86.8 173.5 81.8 93.7 REMARK 620 N 1 2 3 4 DBREF 8E1V A 31 364 UNP O74429 VIP1_SCHPO 31 364 DBREF 8E1V B 31 364 UNP O74429 VIP1_SCHPO 31 364 SEQADV 8E1V SER A 30 UNP O74429 EXPRESSION TAG SEQADV 8E1V SER B 30 UNP O74429 EXPRESSION TAG SEQRES 1 A 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 A 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 A 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 A 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 A 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 A 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 A 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 A 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 A 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 A 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 A 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 A 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 A 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 A 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 A 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 A 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 A 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 A 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 A 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 A 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 A 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 A 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 A 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 A 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 A 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 A 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS SEQRES 1 B 335 SER LYS ARG ASN VAL VAL GLY ILE CYS ALA MET ASP ALA SEQRES 2 B 335 LYS ALA ARG SER LYS PRO CYS ARG ASN ILE LEU ASN ARG SEQRES 3 B 335 ILE ILE ALA GLU GLY GLU PHE GLU ALA ILE VAL PHE GLY SEQRES 4 B 335 ASP ASN MET ILE LEU ASP GLU ALA VAL GLU ASN TRP PRO SEQRES 5 B 335 ALA CYS ASP TYR LEU ILE CYS PHE TYR SER SER GLY PHE SEQRES 6 B 335 PRO LEU LYS LYS ALA GLU LYS TYR VAL GLU LEU ARG LYS SEQRES 7 B 335 PRO PHE CYS VAL ASN ASP VAL VAL PHE GLN GLU LEU LEU SEQRES 8 B 335 TRP ASP ARG ARG LEU VAL LEU ASN ILE LEU ASP ALA ILE SEQRES 9 B 335 ARG VAL SER THR PRO GLN ARG LEU ILE CYS SER ARG ASP SEQRES 10 B 335 GLY GLY PRO LYS ILE ASN LYS VAL LEU GLU GLU LYS LEU SEQRES 11 B 335 ARG ARG LYS PHE GLY ILE GLU ILE THR GLU VAL PRO THR SEQRES 12 B 335 PRO GLU VAL LYS MET LEU ASP GLU ASP THR LEU SER VAL SEQRES 13 B 335 ASP GLY LYS ILE ILE LYS LYS PRO TYR VAL GLU LYS PRO SEQRES 14 B 335 VAL TYR GLY GLU ASP HIS ASN ILE TYR ILE TYR PHE PRO SEQRES 15 B 335 LYS SER VAL GLY GLY GLY GLY ARG LYS LEU PHE ARG LYS SEQRES 16 B 335 VAL ALA ASN LYS SER SER ASP TYR ASP PRO ASP LEU CYS SEQRES 17 B 335 ALA PRO ARG THR GLU GLY SER PHE ILE TYR GLU GLU PHE SEQRES 18 B 335 MET ASN VAL ASP ASN ALA GLU ASP VAL LYS VAL TYR THR SEQRES 19 B 335 VAL GLY PRO HIS TYR SER HIS ALA GLU THR ARG LYS SER SEQRES 20 B 335 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN PRO HIS GLY SEQRES 21 B 335 LYS GLU ILE ARG PHE ILE THR ASN LEU SER GLU GLU GLU SEQRES 22 B 335 LYS ASN MET ALA SER LYS ILE SER ILE ALA PHE GLU GLN SEQRES 23 B 335 PRO VAL CYS GLY PHE ASP LEU LEU ARG VAL SER GLY GLN SEQRES 24 B 335 SER TYR VAL ILE ASP VAL ASN GLY TRP SER PHE VAL LYS SEQRES 25 B 335 ASP ASN ASN ASP TYR TYR ASP ASN ALA ALA ARG ILE LEU SEQRES 26 B 335 LYS GLN MET PHE HIS VAL ALA GLU ARG HIS HET ANP A 401 31 HET MG A 402 1 HET IHP B 501 36 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 IHP C6 H18 O24 P6 FORMUL 6 HOH *460(H2 O) HELIX 1 AA1 MET A 40 ARG A 45 1 6 HELIX 2 AA2 SER A 46 ALA A 58 1 13 HELIX 3 AA3 GLY A 68 GLU A 75 1 8 HELIX 4 AA4 ALA A 76 TRP A 80 5 5 HELIX 5 AA5 PRO A 95 LYS A 107 1 13 HELIX 6 AA6 VAL A 114 TRP A 121 5 8 HELIX 7 AA7 ASP A 122 ILE A 133 1 12 HELIX 8 AA8 ASN A 152 GLY A 164 1 13 HELIX 9 AA9 PRO A 211 GLY A 215 5 5 HELIX 10 AB1 VAL A 253 ASN A 255 5 3 HELIX 11 AB2 SER A 299 PHE A 313 1 15 HELIX 12 AB3 ASN A 343 GLU A 362 1 20 HELIX 13 AB4 MET B 40 ARG B 45 1 6 HELIX 14 AB5 SER B 46 ILE B 57 1 12 HELIX 15 AB6 GLY B 68 GLU B 75 1 8 HELIX 16 AB7 ALA B 76 TRP B 80 5 5 HELIX 17 AB8 PRO B 95 LYS B 107 1 13 HELIX 18 AB9 VAL B 114 TRP B 121 5 8 HELIX 19 AC1 ASP B 122 ILE B 133 1 12 HELIX 20 AC2 ASN B 152 GLY B 164 1 13 HELIX 21 AC3 PRO B 211 GLY B 215 5 5 HELIX 22 AC4 SER B 299 PHE B 313 1 15 HELIX 23 AC5 ASN B 343 GLU B 362 1 20 SHEET 1 AA1 4 GLU A 63 VAL A 66 0 SHEET 2 AA1 4 VAL A 34 CYS A 38 1 N VAL A 35 O GLU A 63 SHEET 3 AA1 4 TYR A 85 CYS A 88 1 O ILE A 87 N GLY A 36 SHEET 4 AA1 4 PHE A 109 CYS A 110 1 O PHE A 109 N LEU A 86 SHEET 1 AA2 6 ARG A 140 CYS A 143 0 SHEET 2 AA2 6 PHE A 245 GLU A 249 -1 O TYR A 247 N LEU A 141 SHEET 3 AA2 6 TYR A 194 PRO A 198 -1 N VAL A 195 O GLU A 248 SHEET 4 AA2 6 TYR A 207 TYR A 209 -1 O TYR A 207 N GLU A 196 SHEET 5 AA2 6 GLY A 218 VAL A 225 -1 O ARG A 219 N ILE A 208 SHEET 6 AA2 6 LYS A 228 ASP A 233 -1 O ASP A 231 N LYS A 220 SHEET 1 AA3 3 VAL A 175 ASP A 179 0 SHEET 2 AA3 3 THR A 182 VAL A 185 -1 O SER A 184 N LYS A 176 SHEET 3 AA3 3 LYS A 188 LYS A 191 -1 O LYS A 188 N VAL A 185 SHEET 1 AA4 5 PHE A 294 THR A 296 0 SHEET 2 AA4 5 SER A 269 LYS A 275 -1 N THR A 273 O PHE A 294 SHEET 3 AA4 5 GLU A 257 VAL A 264 -1 N LYS A 260 O GLU A 272 SHEET 4 AA4 5 VAL A 317 ARG A 324 -1 O CYS A 318 N THR A 263 SHEET 5 AA4 5 SER A 329 GLY A 336 -1 O TYR A 330 N LEU A 323 SHEET 1 AA5 4 GLU B 63 VAL B 66 0 SHEET 2 AA5 4 VAL B 34 CYS B 38 1 N VAL B 35 O GLU B 63 SHEET 3 AA5 4 TYR B 85 CYS B 88 1 O ILE B 87 N CYS B 38 SHEET 4 AA5 4 PHE B 109 CYS B 110 1 O PHE B 109 N LEU B 86 SHEET 1 AA6 6 ARG B 140 CYS B 143 0 SHEET 2 AA6 6 PHE B 245 GLU B 249 -1 O TYR B 247 N LEU B 141 SHEET 3 AA6 6 TYR B 194 PRO B 198 -1 N VAL B 195 O GLU B 248 SHEET 4 AA6 6 TYR B 207 TYR B 209 -1 O TYR B 207 N GLU B 196 SHEET 5 AA6 6 GLY B 218 LYS B 220 -1 O ARG B 219 N ILE B 208 SHEET 6 AA6 6 TYR B 232 ASP B 233 -1 O ASP B 233 N GLY B 218 SHEET 1 AA7 3 VAL B 175 ASP B 179 0 SHEET 2 AA7 3 THR B 182 VAL B 185 -1 O SER B 184 N LYS B 176 SHEET 3 AA7 3 LYS B 188 LYS B 191 -1 O LYS B 188 N VAL B 185 SHEET 1 AA8 4 SER B 269 THR B 273 0 SHEET 2 AA8 4 ASP B 258 VAL B 264 -1 N LYS B 260 O GLU B 272 SHEET 3 AA8 4 VAL B 317 LEU B 323 -1 O CYS B 318 N THR B 263 SHEET 4 AA8 4 TYR B 330 GLY B 336 -1 O ILE B 332 N ASP B 321 LINK OD2 ASP A 321 MG MG A 402 1555 1555 1.94 LINK OD2 ASP A 333 MG MG A 402 1555 1555 2.13 LINK O1G ANP A 401 MG MG A 402 1555 1555 2.06 LINK O2A ANP A 401 MG MG A 402 1555 1555 1.95 LINK MG MG A 402 O HOH A 568 1555 1555 2.12 CISPEP 1 LYS A 192 PRO A 193 0 2.95 CISPEP 2 LYS B 192 PRO B 193 0 3.60 CRYST1 47.560 86.990 86.287 90.00 95.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021026 0.000000 0.001914 0.00000 SCALE2 0.000000 0.011496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011637 0.00000