HEADER STRUCTURAL PROTEIN 12-AUG-22 8E22 TITLE VPS37A_21-148 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: HVPS37A,ESCRT-I COMPLEX SUBUNIT VPS37A,HEPATOCELLULAR COMPND 5 CARCINOMA-RELATED PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VPS37A, HCRP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESCRT, AUTOPHAGY, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.TIAN,Y.S.YE REVDAT 3 01-MAY-24 8E22 1 JRNL REVDAT 2 03-APR-24 8E22 1 JRNL REVDAT 1 09-AUG-23 8E22 0 JRNL AUTH Y.YE,X.LIANG,G.WANG,M.C.BEWLEY,K.HAMAMOTO,X.LIU, JRNL AUTH 2 J.M.FLANAGAN,H.G.WANG,Y.TAKAHASHI,F.TIAN JRNL TITL IDENTIFICATION OF MEMBRANE CURVATURE SENSING MOTIFS JRNL TITL 2 ESSENTIAL FOR VPS37A PHAGOPHORE RECRUITMENT AND JRNL TITL 3 AUTOPHAGOSOME CLOSURE. JRNL REF COMMUN BIOL V. 7 334 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38491121 JRNL DOI 10.1038/S42003-024-06026-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2385 NOES, 74 RDCS, 193 TORSION ANGLES REMARK 4 REMARK 4 8E22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267701. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] VPS37A_21 REMARK 210 -148, 50 MM HEPES, 250 MM NACL, REMARK 210 6.5 MG/ML PHAGE PF1, 95% H2O/5% REMARK 210 D2O; 25 MM HEPES, 150 MM NACL, REMARK 210 12 % W/V BICELLES (DMPC:DMPG: REMARK 210 DHPC = 4:1:10, MOLAR RATIO, Q= REMARK 210 0.5)30, 0.5 MM [U-13C; U-15N] REMARK 210 VPS37A_21-148, 95% H2O/5% D2O; REMARK 210 150 MM NACL, 20 MM PBS, 0.02 % REMARK 210 NAN3, 0.5 MM [U-13C; U-15N] REMARK 210 VPS37A_21-148, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TROSY; 3D 1H-13C NOESY; 3D 1H REMARK 210 -15N NOESY; 2D IPAP-HSQC; 3D REMARK 210 HNCA; 3D HNCO; 3D HNCACO; 3D REMARK 210 HCCH-TOCSY; 2D 1H-13C HSQC; 2D REMARK 210 1H-13C HSQC AROMATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP X 49 6.71 57.53 REMARK 500 1 ASP X 92 170.59 -59.34 REMARK 500 1 LEU X 140 97.23 -35.15 REMARK 500 2 GLN X 47 -85.43 -107.52 REMARK 500 2 LYS X 48 106.56 161.67 REMARK 500 2 VAL X 50 -69.53 -127.25 REMARK 500 2 MET X 91 150.87 -46.62 REMARK 500 2 THR X 133 101.28 54.57 REMARK 500 2 TYR X 141 90.63 -171.59 REMARK 500 2 MET X 147 -173.93 53.66 REMARK 500 3 LEU X 22 -71.69 69.67 REMARK 500 3 GLN X 47 -87.73 -106.40 REMARK 500 3 LYS X 48 101.20 164.62 REMARK 500 3 VAL X 50 -69.41 -125.40 REMARK 500 3 PHE X 73 153.37 -41.37 REMARK 500 3 PRO X 85 152.43 -42.23 REMARK 500 3 LEU X 130 46.60 -70.66 REMARK 500 3 ALA X 131 163.05 56.59 REMARK 500 3 THR X 133 -38.97 -140.86 REMARK 500 3 SER X 134 146.21 64.22 REMARK 500 3 ALA X 136 -161.58 66.07 REMARK 500 3 TYR X 139 -72.17 -129.13 REMARK 500 3 LEU X 140 -159.57 41.54 REMARK 500 3 TYR X 141 -169.94 -128.65 REMARK 500 4 GLN X 47 -89.99 -103.26 REMARK 500 4 LYS X 48 96.86 164.66 REMARK 500 4 PHE X 73 150.65 -42.38 REMARK 500 4 ASP X 92 -177.32 -69.80 REMARK 500 4 VAL X 98 125.91 57.15 REMARK 500 4 ASN X 105 34.24 -85.02 REMARK 500 4 SER X 134 95.41 -54.51 REMARK 500 4 THR X 135 29.10 -152.16 REMARK 500 4 ALA X 136 177.57 66.67 REMARK 500 4 LEU X 140 75.84 28.39 REMARK 500 5 GLN X 47 -97.41 -106.81 REMARK 500 5 LYS X 48 72.61 175.69 REMARK 500 5 ASP X 49 10.41 87.50 REMARK 500 5 VAL X 50 -68.41 -122.71 REMARK 500 5 ASN X 105 34.31 -85.90 REMARK 500 5 THR X 135 -77.40 -125.94 REMARK 500 5 LEU X 140 76.55 29.24 REMARK 500 5 MET X 147 -173.61 51.88 REMARK 500 6 ILE X 43 130.19 -38.43 REMARK 500 6 GLN X 47 -90.40 -105.71 REMARK 500 6 LYS X 48 102.90 168.01 REMARK 500 6 VAL X 50 -72.64 -124.88 REMARK 500 6 ASP X 92 -178.20 -68.43 REMARK 500 6 ASN X 105 34.39 -80.17 REMARK 500 6 LEU X 130 95.89 -58.49 REMARK 500 6 THR X 133 35.57 -147.65 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31039 RELATED DB: BMRB REMARK 900 VPS37A_21-148 DBREF 8E22 X 21 148 UNP Q8NEZ2 VP37A_HUMAN 21 148 SEQRES 1 X 128 GLY LEU THR SER LEU GLN GLN GLN LYS GLN ARG LEU ILE SEQRES 2 X 128 GLU SER LEU ARG ASN SER HIS SER SER ILE ALA GLU ILE SEQRES 3 X 128 GLN LYS ASP VAL GLU TYR ARG LEU PRO PHE THR ILE ASN SEQRES 4 X 128 ASN LEU THR ILE ASN ILE ASN ILE LEU LEU PRO PRO GLN SEQRES 5 X 128 PHE PRO GLN GLU LYS PRO VAL ILE SER VAL TYR PRO PRO SEQRES 6 X 128 ILE ARG HIS HIS LEU MET ASP LYS GLN GLY VAL TYR VAL SEQRES 7 X 128 THR SER PRO LEU VAL ASN ASN PHE THR MET HIS SER ASP SEQRES 8 X 128 LEU GLY LYS ILE ILE GLN SER LEU LEU ASP GLU PHE TRP SEQRES 9 X 128 LYS ASN PRO PRO VAL LEU ALA PRO THR SER THR ALA PHE SEQRES 10 X 128 PRO TYR LEU TYR SER ASN PRO SER GLY MET SER HELIX 1 AA1 THR X 23 HIS X 40 1 18 HELIX 2 AA2 SER X 100 ASN X 105 1 6 HELIX 3 AA3 ASP X 111 ASN X 126 1 16 SHEET 1 AA1 4 ALA X 44 GLN X 47 0 SHEET 2 AA1 4 GLU X 51 ILE X 58 -1 O ARG X 53 N ALA X 44 SHEET 3 AA1 4 LEU X 61 LEU X 68 -1 O ILE X 63 N PHE X 56 SHEET 4 AA1 4 VAL X 79 TYR X 83 -1 O SER X 81 N ASN X 66 CISPEP 1 PHE X 73 PRO X 74 1 0.14 CISPEP 2 TYR X 83 PRO X 84 1 0.86 CISPEP 3 PHE X 73 PRO X 74 2 1.79 CISPEP 4 TYR X 83 PRO X 84 2 -1.77 CISPEP 5 PHE X 73 PRO X 74 3 0.09 CISPEP 6 TYR X 83 PRO X 84 3 -1.31 CISPEP 7 PHE X 73 PRO X 74 4 1.77 CISPEP 8 TYR X 83 PRO X 84 4 -0.40 CISPEP 9 PHE X 73 PRO X 74 5 1.87 CISPEP 10 TYR X 83 PRO X 84 5 -0.48 CISPEP 11 PHE X 73 PRO X 74 6 0.23 CISPEP 12 TYR X 83 PRO X 84 6 -0.97 CISPEP 13 PHE X 73 PRO X 74 7 -0.25 CISPEP 14 TYR X 83 PRO X 84 7 -0.18 CISPEP 15 PHE X 73 PRO X 74 8 0.65 CISPEP 16 TYR X 83 PRO X 84 8 1.44 CISPEP 17 PHE X 73 PRO X 74 9 0.56 CISPEP 18 TYR X 83 PRO X 84 9 -0.13 CISPEP 19 PHE X 73 PRO X 74 10 0.00 CISPEP 20 TYR X 83 PRO X 84 10 -1.42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1