HEADER MEMBRANE PROTEIN 19-AUG-22 8E4Y TITLE CRYO-EM STRUCTURE OF HUMAN GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 TITLE 2 (GPAT1) IN COMPLEX WITH 2-OXOHEXADECYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPAT-1; COMPND 5 EC: 2.3.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPAM, GPAT1, KIAA1560; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS ACYLTRANSFERASE, LPA, MONOTOPIC, MITOCHONDRIAL, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Z.L.JOHNSON,D.J.WASILKO,M.AMMIRATI,J.S.CHANG,S.HAN,H.WU REVDAT 3 01-FEB-23 8E4Y 1 JRNL REVDAT 2 28-DEC-22 8E4Y 1 JRNL REVDAT 1 21-DEC-22 8E4Y 0 JRNL AUTH Z.L.JOHNSON,M.AMMIRATI,D.J.WASILKO,J.S.CHANG,S.NOELL, JRNL AUTH 2 T.L.FOLEY,H.YOON,K.SMITH,S.ASANO,K.HALES,M.WAN,Q.YANG, JRNL AUTH 3 M.A.PIOTROWSKI,K.A.FARLEY,T.GILBERT,L.M.ASCHENBRENNER, JRNL AUTH 4 K.F.FENNELL,J.K.DUTRA,M.XU,C.GUO,A.E.VARGHESE,J.BELLENGER, JRNL AUTH 5 A.QUINN,C.W.AM ENDE,G.M.WEST,M.C.GRIFFOR,D.BENNETT, JRNL AUTH 6 M.CALABRESE,C.M.STEPPAN,S.HAN,H.WU JRNL TITL STRUCTURAL BASIS OF THE ACYL-TRANSFER MECHANISM OF HUMAN JRNL TITL 2 GPAT1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 22 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 36522428 JRNL DOI 10.1038/S41594-022-00884-7 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, CTFFIND, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, PHENIX, REFMAC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1K30 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 161511 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8E4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000267721. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GLYCEROL-3-PHOSPHATE REMARK 245 ACYLTRANSFERASE 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.70 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FORCE -5, BLOT TIME 3 SEC REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 8491 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 62 REMARK 465 ASP A 63 REMARK 465 TYR A 64 REMARK 465 LYS A 65 REMARK 465 ASP A 66 REMARK 465 ASP A 67 REMARK 465 ASP A 68 REMARK 465 ASP A 69 REMARK 465 LYS A 70 REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 LEU A 75 REMARK 465 TYR A 76 REMARK 465 PHE A 77 REMARK 465 GLN A 78 REMARK 465 SER A 79 REMARK 465 ASN A 80 REMARK 465 PRO A 81 REMARK 465 SER A 82 REMARK 465 ILE A 83 REMARK 465 PRO A 84 REMARK 465 SER A 85 REMARK 465 LEU A 86 REMARK 465 ASP A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 ALA A 156 REMARK 465 GLN A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 371 REMARK 465 PRO A 372 REMARK 465 LYS A 373 REMARK 465 LYS A 374 REMARK 465 ASN A 375 REMARK 465 GLU A 376 REMARK 465 SER A 377 REMARK 465 LEU A 378 REMARK 465 SER A 435 REMARK 465 ARG A 436 REMARK 465 PRO A 437 REMARK 465 SER A 438 REMARK 465 ASP A 439 REMARK 465 ALA A 440 REMARK 465 ALA A 441 REMARK 465 ASP A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 ARG A 445 REMARK 465 ASP A 446 REMARK 465 THR A 447 REMARK 465 SER A 448 REMARK 465 ILE A 449 REMARK 465 ASN A 450 REMARK 465 GLU A 451 REMARK 465 SER A 452 REMARK 465 ARG A 453 REMARK 465 ASN A 454 REMARK 465 ALA A 455 REMARK 465 LYS A 596 REMARK 465 ARG A 597 REMARK 465 GLY A 598 REMARK 465 LEU A 599 REMARK 465 GLY A 600 REMARK 465 GLY A 601 REMARK 465 PRO A 602 REMARK 465 THR A 603 REMARK 465 SER A 604 REMARK 465 THR A 605 REMARK 465 PRO A 606 REMARK 465 PRO A 607 REMARK 465 ASN A 608 REMARK 465 GLU A 660 REMARK 465 HIS A 661 REMARK 465 ASP A 662 REMARK 465 ASP A 663 REMARK 465 GLN A 664 REMARK 465 GLU A 665 REMARK 465 ASP A 666 REMARK 465 ILE A 667 REMARK 465 SER A 668 REMARK 465 PRO A 669 REMARK 465 SER A 670 REMARK 465 LEU A 671 REMARK 465 ALA A 672 REMARK 465 GLU A 673 REMARK 465 GLN A 674 REMARK 465 GLN A 675 REMARK 465 TRP A 676 REMARK 465 ASP A 677 REMARK 465 LYS A 678 REMARK 465 LYS A 679 REMARK 465 LEU A 680 REMARK 465 PRO A 681 REMARK 465 GLU A 682 REMARK 465 PRO A 683 REMARK 465 LEU A 684 REMARK 465 SER A 685 REMARK 465 TRP A 686 REMARK 465 ARG A 687 REMARK 465 SER A 688 REMARK 465 ASP A 689 REMARK 465 GLU A 690 REMARK 465 GLU A 691 REMARK 465 ASP A 692 REMARK 465 GLU A 693 REMARK 465 ASP A 694 REMARK 465 SER A 695 REMARK 465 ASP A 696 REMARK 465 PHE A 697 REMARK 465 GLY A 698 REMARK 465 GLU A 699 REMARK 465 GLU A 700 REMARK 465 GLN A 701 REMARK 465 ARG A 702 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 109 34.17 -97.07 REMARK 500 ASP A 119 67.88 -105.49 REMARK 500 LYS A 122 -30.86 78.65 REMARK 500 MET A 177 -62.70 -99.35 REMARK 500 ILE A 263 -65.78 73.37 REMARK 500 ARG A 279 5.21 85.01 REMARK 500 LEU A 280 39.40 40.00 REMARK 500 ARG A 287 -133.56 65.34 REMARK 500 GLN A 307 68.32 62.32 REMARK 500 LEU A 369 -69.88 -107.61 REMARK 500 LEU A 433 79.27 -116.71 REMARK 500 HIS A 496 -63.72 -128.11 REMARK 500 ARG A 497 -60.22 69.51 REMARK 500 GLN A 710 79.49 -106.48 REMARK 500 ASN A 741 38.12 -99.36 REMARK 500 ASN A 766 35.16 72.66 REMARK 500 LYS A 798 -110.32 46.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-27898 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 REMARK 900 (GPAT1) IN COMPLEX WITH 2-OXOHEXADECYL-COA REMARK 900 RELATED ID: 8E50 RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 REMARK 900 (GPAT1) IN COMPLEX WITH COA AND PALMITOYL-LPA DBREF 8E4Y A 80 828 UNP Q9HCL2 GPAT1_HUMAN 80 828 SEQADV 8E4Y MET A 62 UNP Q9HCL2 INITIATING METHIONINE SEQADV 8E4Y ASP A 63 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y TYR A 64 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y LYS A 65 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y ASP A 66 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y ASP A 67 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y ASP A 68 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y ASP A 69 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y LYS A 70 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y GLY A 71 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y SER A 72 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y GLU A 73 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y ASN A 74 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y LEU A 75 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y TYR A 76 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y PHE A 77 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y GLN A 78 UNP Q9HCL2 EXPRESSION TAG SEQADV 8E4Y SER A 79 UNP Q9HCL2 EXPRESSION TAG SEQRES 1 A 767 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER GLU ASN SEQRES 2 A 767 LEU TYR PHE GLN SER ASN PRO SER ILE PRO SER LEU GLY SEQRES 3 A 767 LEU ARG ASN VAL ILE TYR ILE ASN GLU THR HIS THR ARG SEQRES 4 A 767 HIS ARG GLY TRP LEU ALA ARG ARG LEU SER TYR VAL LEU SEQRES 5 A 767 PHE ILE GLN GLU ARG ASP VAL HIS LYS GLY MET PHE ALA SEQRES 6 A 767 THR ASN VAL THR GLU ASN VAL LEU ASN SER SER ARG VAL SEQRES 7 A 767 GLN GLU ALA ILE ALA GLU VAL ALA ALA GLU LEU ASN PRO SEQRES 8 A 767 ASP GLY SER ALA GLN GLN GLN SER LYS ALA VAL ASN LYS SEQRES 9 A 767 VAL LYS LYS LYS ALA LYS ARG ILE LEU GLN GLU MET VAL SEQRES 10 A 767 ALA THR VAL SER PRO ALA MET ILE ARG LEU THR GLY TRP SEQRES 11 A 767 VAL LEU LEU LYS LEU PHE ASN SER PHE PHE TRP ASN ILE SEQRES 12 A 767 GLN ILE HIS LYS GLY GLN LEU GLU MET VAL LYS ALA ALA SEQRES 13 A 767 THR GLU THR ASN LEU PRO LEU LEU PHE LEU PRO VAL HIS SEQRES 14 A 767 ARG SER HIS ILE ASP TYR LEU LEU LEU THR PHE ILE LEU SEQRES 15 A 767 PHE CYS HIS ASN ILE LYS ALA PRO TYR ILE ALA SER GLY SEQRES 16 A 767 ASN ASN LEU ASN ILE PRO ILE PHE SER THR LEU ILE HIS SEQRES 17 A 767 LYS LEU GLY GLY PHE PHE ILE ARG ARG ARG LEU ASP GLU SEQRES 18 A 767 THR PRO ASP GLY ARG LYS ASP VAL LEU TYR ARG ALA LEU SEQRES 19 A 767 LEU HIS GLY HIS ILE VAL GLU LEU LEU ARG GLN GLN GLN SEQRES 20 A 767 PHE LEU GLU ILE PHE LEU GLU GLY THR ARG SER ARG SER SEQRES 21 A 767 GLY LYS THR SER CYS ALA ARG ALA GLY LEU LEU SER VAL SEQRES 22 A 767 VAL VAL ASP THR LEU SER THR ASN VAL ILE PRO ASP ILE SEQRES 23 A 767 LEU ILE ILE PRO VAL GLY ILE SER TYR ASP ARG ILE ILE SEQRES 24 A 767 GLU GLY HIS TYR ASN GLY GLU GLN LEU GLY LYS PRO LYS SEQRES 25 A 767 LYS ASN GLU SER LEU TRP SER VAL ALA ARG GLY VAL ILE SEQRES 26 A 767 ARG MET LEU ARG LYS ASN TYR GLY CYS VAL ARG VAL ASP SEQRES 27 A 767 PHE ALA GLN PRO PHE SER LEU LYS GLU TYR LEU GLU SER SEQRES 28 A 767 GLN SER GLN LYS PRO VAL SER ALA LEU LEU SER LEU GLU SEQRES 29 A 767 GLN ALA LEU LEU PRO ALA ILE LEU PRO SER ARG PRO SER SEQRES 30 A 767 ASP ALA ALA ASP GLU GLY ARG ASP THR SER ILE ASN GLU SEQRES 31 A 767 SER ARG ASN ALA THR ASP GLU SER LEU ARG ARG ARG LEU SEQRES 32 A 767 ILE ALA ASN LEU ALA GLU HIS ILE LEU PHE THR ALA SER SEQRES 33 A 767 LYS SER CYS ALA ILE MET SER THR HIS ILE VAL ALA CYS SEQRES 34 A 767 LEU LEU LEU TYR ARG HIS ARG GLN GLY ILE ASP LEU SER SEQRES 35 A 767 THR LEU VAL GLU ASP PHE PHE VAL MET LYS GLU GLU VAL SEQRES 36 A 767 LEU ALA ARG ASP PHE ASP LEU GLY PHE SER GLY ASN SER SEQRES 37 A 767 GLU ASP VAL VAL MET HIS ALA ILE GLN LEU LEU GLY ASN SEQRES 38 A 767 CYS VAL THR ILE THR HIS THR SER ARG ASN ASP GLU PHE SEQRES 39 A 767 PHE ILE THR PRO SER THR THR VAL PRO SER VAL PHE GLU SEQRES 40 A 767 LEU ASN PHE TYR SER ASN GLY VAL LEU HIS VAL PHE ILE SEQRES 41 A 767 MET GLU ALA ILE ILE ALA CYS SER LEU TYR ALA VAL LEU SEQRES 42 A 767 ASN LYS ARG GLY LEU GLY GLY PRO THR SER THR PRO PRO SEQRES 43 A 767 ASN LEU ILE SER GLN GLU GLN LEU VAL ARG LYS ALA ALA SEQRES 44 A 767 SER LEU CYS TYR LEU LEU SER ASN GLU GLY THR ILE SER SEQRES 45 A 767 LEU PRO CYS GLN THR PHE TYR GLN VAL CYS HIS GLU THR SEQRES 46 A 767 VAL GLY LYS PHE ILE GLN TYR GLY ILE LEU THR VAL ALA SEQRES 47 A 767 GLU HIS ASP ASP GLN GLU ASP ILE SER PRO SER LEU ALA SEQRES 48 A 767 GLU GLN GLN TRP ASP LYS LYS LEU PRO GLU PRO LEU SER SEQRES 49 A 767 TRP ARG SER ASP GLU GLU ASP GLU ASP SER ASP PHE GLY SEQRES 50 A 767 GLU GLU GLN ARG ASP CYS TYR LEU LYS VAL SER GLN SER SEQRES 51 A 767 LYS GLU HIS GLN GLN PHE ILE THR PHE LEU GLN ARG LEU SEQRES 52 A 767 LEU GLY PRO LEU LEU GLU ALA TYR SER SER ALA ALA ILE SEQRES 53 A 767 PHE VAL HIS ASN PHE SER GLY PRO VAL PRO GLU PRO GLU SEQRES 54 A 767 TYR LEU GLN LYS LEU HIS LYS TYR LEU ILE THR ARG THR SEQRES 55 A 767 GLU ARG ASN VAL ALA VAL TYR ALA GLU SER ALA THR TYR SEQRES 56 A 767 CYS LEU VAL LYS ASN ALA VAL LYS MET PHE LYS ASP ILE SEQRES 57 A 767 GLY VAL PHE LYS GLU THR LYS GLN LYS ARG VAL SER VAL SEQRES 58 A 767 LEU GLU LEU SER SER THR PHE LEU PRO GLN CYS ASN ARG SEQRES 59 A 767 GLN LYS LEU LEU GLU TYR ILE LEU SER PHE VAL VAL LEU HET UKL A1001 65 HET NKO A1002 27 HETNAM UKL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3- HETNAM 2 UKL (PHOSPHONOOXY)OXOLAN-2-YL]METHYL (3R)-3-HYDROXY-2,2- HETNAM 3 UKL DIMETHYL-4-OXO-4-{[3-OXO-3-({2-[(2-OXOHEXADECYL) HETNAM 4 UKL SULFANYL]ETHYL}AMINO)PROPYL]AMINO}BUTYL DIHYDROGEN HETNAM 5 UKL DIPHOSPHATE (NON-PREFERRED NAME) HETNAM NKO (2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL HEXADECANOATE HETSYN NKO 16:0 LPA; PALMITOYL LYSOPHOSPHATIDIC ACID FORMUL 2 UKL C37 H66 N7 O17 P3 S FORMUL 3 NKO C19 H39 O7 P HELIX 1 AA1 GLY A 103 LEU A 109 1 7 HELIX 2 AA2 LEU A 109 GLN A 116 1 8 HELIX 3 AA3 ASN A 128 ASN A 135 1 8 HELIX 4 AA4 SER A 136 ASN A 151 1 16 HELIX 5 AA5 ALA A 162 GLU A 176 1 15 HELIX 6 AA6 SER A 182 PHE A 201 1 20 HELIX 7 AA7 LYS A 208 THR A 220 1 13 HELIX 8 AA8 ILE A 234 CYS A 245 1 12 HELIX 9 AA9 ASN A 258 ASN A 260 5 3 HELIX 10 AB1 ILE A 263 LEU A 271 1 9 HELIX 11 AB2 ASP A 289 GLN A 306 1 18 HELIX 12 AB3 LEU A 331 THR A 341 1 11 HELIX 13 AB4 TYR A 364 GLY A 370 1 7 HELIX 14 AB5 SER A 380 LYS A 391 1 12 HELIX 15 AB6 LEU A 406 LYS A 416 1 11 HELIX 16 AB7 SER A 423 LEU A 433 1 11 HELIX 17 AB8 ASP A 457 CYS A 480 1 24 HELIX 18 AB9 MET A 483 ARG A 495 1 13 HELIX 19 AC1 LEU A 502 ARG A 519 1 18 HELIX 20 AC2 ASN A 528 LEU A 540 1 13 HELIX 21 AC3 THR A 562 ASN A 574 1 13 HELIX 22 AC4 VAL A 576 ASN A 595 1 20 HELIX 23 AC5 GLN A 612 LEU A 626 1 15 HELIX 24 AC6 THR A 638 TYR A 653 1 16 HELIX 25 AC7 SER A 711 LEU A 725 1 15 HELIX 26 AC8 LEU A 725 VAL A 739 1 15 HELIX 27 AC9 HIS A 740 PHE A 742 5 3 HELIX 28 AD1 GLU A 748 ARG A 765 1 18 HELIX 29 AD2 TYR A 770 THR A 775 5 6 HELIX 30 AD3 TYR A 776 GLY A 790 1 15 HELIX 31 AD4 PRO A 811 SER A 824 1 14 SHEET 1 AA1 8 LEU A 88 ASN A 90 0 SHEET 2 AA1 8 ILE A 204 HIS A 207 -1 O ILE A 206 N ARG A 89 SHEET 3 AA1 8 VAL A 396 PHE A 400 1 O VAL A 398 N GLN A 205 SHEET 4 AA1 8 LEU A 348 TYR A 356 -1 N GLY A 353 O ASP A 399 SHEET 5 AA1 8 LEU A 224 PRO A 228 1 N LEU A 227 O ILE A 350 SHEET 6 AA1 8 LEU A 310 GLU A 311 1 O LEU A 310 N PHE A 226 SHEET 7 AA1 8 TYR A 252 GLY A 256 1 N TYR A 252 O GLU A 311 SHEET 8 AA1 8 GLY A 273 ILE A 276 1 O ILE A 276 N SER A 255 SHEET 1 AA2 5 LEU A 88 ASN A 90 0 SHEET 2 AA2 5 ILE A 204 HIS A 207 -1 O ILE A 206 N ARG A 89 SHEET 3 AA2 5 VAL A 396 PHE A 400 1 O VAL A 398 N GLN A 205 SHEET 4 AA2 5 LEU A 348 TYR A 356 -1 N GLY A 353 O ASP A 399 SHEET 5 AA2 5 PHE A 404 SER A 405 -1 O PHE A 404 N ILE A 349 SHEET 1 AA3 3 ILE A 500 ASP A 501 0 SHEET 2 AA3 3 PHE A 555 PRO A 559 -1 O ILE A 557 N ILE A 500 SHEET 3 AA3 3 VAL A 544 HIS A 548 -1 N THR A 547 O PHE A 556 SHEET 1 AA4 3 ILE A 610 SER A 611 0 SHEET 2 AA4 3 TYR A 705 VAL A 708 -1 O LEU A 706 N ILE A 610 SHEET 3 AA4 3 LEU A 656 VAL A 658 -1 N THR A 657 O LYS A 707 SHEET 1 AA5 3 VAL A 746 PRO A 747 0 SHEET 2 AA5 3 SER A 801 LEU A 805 -1 O LEU A 803 N VAL A 746 SHEET 3 AA5 3 PHE A 792 LYS A 796 -1 N LYS A 793 O GLU A 804 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000