data_8E52 # _entry.id 8E52 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8E52 pdb_00008e52 10.2210/pdb8e52/pdb WWPDB D_1000267842 ? ? EMDB EMD-27900 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'MicroED structure of proteinase K recorded on K2' _pdbx_database_related.db_id EMD-27900 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8E52 _pdbx_database_status.recvd_initial_deposition_date 2022-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Clabbers, M.T.B.' 1 0000-0002-5466-6508 'Martynowycz, M.W.' 2 0000-0003-0055-230X 'Hattne, J.' 3 0000-0002-8936-0912 'Nannenga, B.L.' 4 0000-0001-6859-3429 'Gonen, T.' 5 0000-0002-9254-4069 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Struct.Biol. _citation.journal_id_ASTM JSBIEM _citation.journal_id_CSD 0803 _citation.journal_id_ISSN 1095-8657 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 214 _citation.language ? _citation.page_first 107886 _citation.page_last 107886 _citation.title 'Electron-counting MicroED data with the K2 and K3 direct electron detectors.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jsb.2022.107886 _citation.pdbx_database_id_PubMed 36044956 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clabbers, M.T.B.' 1 ? primary 'Martynowycz, M.W.' 2 ? primary 'Hattne, J.' 3 ? primary 'Nannenga, B.L.' 4 ? primary 'Gonen, T.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8E52 _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.570 _cell.length_a_esd ? _cell.length_b 67.570 _cell.length_b_esd ? _cell.length_c 100.910 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8E52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proteinase K' 28930.783 1 3.4.21.64 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Endopeptidase K, Tritirachium alkaline proteinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_seq_one_letter_code_can ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _entity_poly.pdbx_strand_id AAA _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLN n 1 4 THR n 1 5 ASN n 1 6 ALA n 1 7 PRO n 1 8 TRP n 1 9 GLY n 1 10 LEU n 1 11 ALA n 1 12 ARG n 1 13 ILE n 1 14 SER n 1 15 SER n 1 16 THR n 1 17 SER n 1 18 PRO n 1 19 GLY n 1 20 THR n 1 21 SER n 1 22 THR n 1 23 TYR n 1 24 TYR n 1 25 TYR n 1 26 ASP n 1 27 GLU n 1 28 SER n 1 29 ALA n 1 30 GLY n 1 31 GLN n 1 32 GLY n 1 33 SER n 1 34 CYS n 1 35 VAL n 1 36 TYR n 1 37 VAL n 1 38 ILE n 1 39 ASP n 1 40 THR n 1 41 GLY n 1 42 ILE n 1 43 GLU n 1 44 ALA n 1 45 SER n 1 46 HIS n 1 47 PRO n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 GLY n 1 52 ARG n 1 53 ALA n 1 54 GLN n 1 55 MET n 1 56 VAL n 1 57 LYS n 1 58 THR n 1 59 TYR n 1 60 TYR n 1 61 TYR n 1 62 SER n 1 63 SER n 1 64 ARG n 1 65 ASP n 1 66 GLY n 1 67 ASN n 1 68 GLY n 1 69 HIS n 1 70 GLY n 1 71 THR n 1 72 HIS n 1 73 CYS n 1 74 ALA n 1 75 GLY n 1 76 THR n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 ARG n 1 81 THR n 1 82 TYR n 1 83 GLY n 1 84 VAL n 1 85 ALA n 1 86 LYS n 1 87 LYS n 1 88 THR n 1 89 GLN n 1 90 LEU n 1 91 PHE n 1 92 GLY n 1 93 VAL n 1 94 LYS n 1 95 VAL n 1 96 LEU n 1 97 ASP n 1 98 ASP n 1 99 ASN n 1 100 GLY n 1 101 SER n 1 102 GLY n 1 103 GLN n 1 104 TYR n 1 105 SER n 1 106 THR n 1 107 ILE n 1 108 ILE n 1 109 ALA n 1 110 GLY n 1 111 MET n 1 112 ASP n 1 113 PHE n 1 114 VAL n 1 115 ALA n 1 116 SER n 1 117 ASP n 1 118 LYS n 1 119 ASN n 1 120 ASN n 1 121 ARG n 1 122 ASN n 1 123 CYS n 1 124 PRO n 1 125 LYS n 1 126 GLY n 1 127 VAL n 1 128 VAL n 1 129 ALA n 1 130 SER n 1 131 LEU n 1 132 SER n 1 133 LEU n 1 134 GLY n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 SER n 1 139 SER n 1 140 SER n 1 141 VAL n 1 142 ASN n 1 143 SER n 1 144 ALA n 1 145 ALA n 1 146 ALA n 1 147 ARG n 1 148 LEU n 1 149 GLN n 1 150 SER n 1 151 SER n 1 152 GLY n 1 153 VAL n 1 154 MET n 1 155 VAL n 1 156 ALA n 1 157 VAL n 1 158 ALA n 1 159 ALA n 1 160 GLY n 1 161 ASN n 1 162 ASN n 1 163 ASN n 1 164 ALA n 1 165 ASP n 1 166 ALA n 1 167 ARG n 1 168 ASN n 1 169 TYR n 1 170 SER n 1 171 PRO n 1 172 ALA n 1 173 SER n 1 174 GLU n 1 175 PRO n 1 176 SER n 1 177 VAL n 1 178 CYS n 1 179 THR n 1 180 VAL n 1 181 GLY n 1 182 ALA n 1 183 SER n 1 184 ASP n 1 185 ARG n 1 186 TYR n 1 187 ASP n 1 188 ARG n 1 189 ARG n 1 190 SER n 1 191 SER n 1 192 PHE n 1 193 SER n 1 194 ASN n 1 195 TYR n 1 196 GLY n 1 197 SER n 1 198 VAL n 1 199 LEU n 1 200 ASP n 1 201 ILE n 1 202 PHE n 1 203 GLY n 1 204 PRO n 1 205 GLY n 1 206 THR n 1 207 SER n 1 208 ILE n 1 209 LEU n 1 210 SER n 1 211 THR n 1 212 TRP n 1 213 ILE n 1 214 GLY n 1 215 GLY n 1 216 SER n 1 217 THR n 1 218 ARG n 1 219 SER n 1 220 ILE n 1 221 SER n 1 222 GLY n 1 223 THR n 1 224 SER n 1 225 MET n 1 226 ALA n 1 227 THR n 1 228 PRO n 1 229 HIS n 1 230 VAL n 1 231 ALA n 1 232 GLY n 1 233 LEU n 1 234 ALA n 1 235 ALA n 1 236 TYR n 1 237 LEU n 1 238 MET n 1 239 THR n 1 240 LEU n 1 241 GLY n 1 242 LYS n 1 243 THR n 1 244 THR n 1 245 ALA n 1 246 ALA n 1 247 SER n 1 248 ALA n 1 249 CYS n 1 250 ARG n 1 251 TYR n 1 252 ILE n 1 253 ALA n 1 254 ASP n 1 255 THR n 1 256 ALA n 1 257 ASN n 1 258 LYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 SER n 1 263 ASN n 1 264 ILE n 1 265 PRO n 1 266 PHE n 1 267 GLY n 1 268 THR n 1 269 VAL n 1 270 ASN n 1 271 LEU n 1 272 LEU n 1 273 ALA n 1 274 TYR n 1 275 ASN n 1 276 ASN n 1 277 TYR n 1 278 GLN n 1 279 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 279 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PROK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parengyodontium album' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 37998 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Parengyodontium album' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 37998 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRTK_PARAQ _struct_ref.pdbx_db_accession P06873 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSR TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAG NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA ; _struct_ref.pdbx_align_begin 106 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8E52 _struct_ref_seq.pdbx_strand_id AAA _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06873 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 384 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 106 _struct_ref_seq.pdbx_auth_seq_align_end 384 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8E52 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] 0.785 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.785 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -1.570 _refine.B_iso_max ? _refine.B_iso_mean 20.322 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.870 _refine.correlation_coeff_Fo_to_Fc_free 0.809 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8E52 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.800 _refine.ls_d_res_low 25.924 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6035 _refine.ls_number_reflns_R_free 391 _refine.ls_number_reflns_R_work 5644 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.812 _refine.ls_percent_reflns_R_free 6.479 _refine.ls_R_factor_all 0.250 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2920 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2472 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.506 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 34.683 _refine.overall_SU_ML 0.614 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.004 0.013 2070 ? r_bond_refined_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.000 0.017 1806 ? r_bond_other_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.336 1.639 2814 ? r_angle_refined_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.230 1.571 4188 ? r_angle_other_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 7.067 5.000 278 ? r_dihedral_angle_1_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 33.940 21.895 95 ? r_dihedral_angle_2_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 15.515 15.000 299 ? r_dihedral_angle_3_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 17.668 15.000 12 ? r_dihedral_angle_4_deg ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.045 0.200 279 ? r_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.004 0.020 2417 ? r_gen_planes_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.001 0.020 447 ? r_gen_planes_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.209 0.200 500 ? r_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.192 0.200 1897 ? r_symmetry_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.161 0.200 1060 ? r_nbtor_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.077 0.200 908 ? r_symmetry_nbtor_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.152 0.200 62 ? r_xyhbond_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.088 0.200 3 ? r_metal_ion_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.193 0.200 13 ? r_symmetry_nbd_refined ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.205 0.200 60 ? r_nbd_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.632 2.195 1115 ? r_mcbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.632 2.194 1114 ? r_mcbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.100 3.293 1392 ? r_mcangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.099 3.295 1393 ? r_mcangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.663 2.296 955 ? r_scbond_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.663 2.297 956 ? r_scbond_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.195 3.412 1422 ? r_scangle_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.195 3.413 1423 ? r_scangle_other ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.613 26.971 2388 ? r_lrange_it ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 3.562 26.968 2388 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 2.800 2.872 430 . 26 397 98.3721 . 0.342 . 0.369 . 0.340 . . . . . 0.341 . 20 . 0.539 0.477 'ELECTRON CRYSTALLOGRAPHY' 2.872 2.950 428 . 27 397 99.0654 . 0.337 . 0.422 . 0.331 . . . . . 0.329 . 20 . 0.613 0.633 'ELECTRON CRYSTALLOGRAPHY' 2.950 3.034 417 . 24 387 98.5611 . 0.348 . 0.359 . 0.347 . . . . . 0.351 . 20 . 0.651 0.651 'ELECTRON CRYSTALLOGRAPHY' 3.034 3.126 398 . 28 365 98.7437 . 0.325 . 0.345 . 0.323 . . . . . 0.325 . 20 . 0.705 0.714 'ELECTRON CRYSTALLOGRAPHY' 3.126 3.227 402 . 26 372 99.0050 . 0.317 . 0.348 . 0.314 . . . . . 0.318 . 20 . 0.734 0.750 'ELECTRON CRYSTALLOGRAPHY' 3.227 3.339 375 . 24 345 98.4000 . 0.296 . 0.366 . 0.291 . . . . . 0.296 . 20 . 0.746 0.690 'ELECTRON CRYSTALLOGRAPHY' 3.339 3.462 369 . 24 340 98.6450 . 0.274 . 0.320 . 0.271 . . . . . 0.281 . 20 . 0.814 0.809 'ELECTRON CRYSTALLOGRAPHY' 3.462 3.601 364 . 23 336 98.6264 . 0.222 . 0.265 . 0.219 . . . . . 0.227 . 20 . 0.884 0.853 'ELECTRON CRYSTALLOGRAPHY' 3.601 3.758 343 . 19 319 98.5423 . 0.232 . 0.220 . 0.233 . . . . . 0.239 . 20 . 0.894 0.908 'ELECTRON CRYSTALLOGRAPHY' 3.758 3.937 328 . 22 301 98.4756 . 0.218 . 0.262 . 0.215 . . . . . 0.223 . 20 . 0.899 0.879 'ELECTRON CRYSTALLOGRAPHY' 3.937 4.145 315 . 20 284 96.5079 . 0.193 . 0.305 . 0.184 . . . . . 0.187 . 20 . 0.914 0.905 'ELECTRON CRYSTALLOGRAPHY' 4.145 4.389 298 . 20 269 96.9799 . 0.195 . 0.239 . 0.192 . . . . . 0.192 . 20 . 0.929 0.918 'ELECTRON CRYSTALLOGRAPHY' 4.389 4.683 288 . 18 261 96.8750 . 0.171 . 0.140 . 0.173 . . . . . 0.173 . 20 . 0.941 0.954 'ELECTRON CRYSTALLOGRAPHY' 4.683 5.044 274 . 19 247 97.0803 . 0.196 . 0.185 . 0.197 . . . . . 0.199 . 20 . 0.940 0.956 'ELECTRON CRYSTALLOGRAPHY' 5.044 5.505 246 . 17 223 97.5610 . 0.179 . 0.270 . 0.172 . . . . . 0.174 . 20 . 0.940 0.904 'ELECTRON CRYSTALLOGRAPHY' 5.505 6.120 233 . 12 217 98.2833 . 0.198 . 0.282 . 0.195 . . . . . 0.188 . 20 . 0.931 0.895 'ELECTRON CRYSTALLOGRAPHY' 6.120 7.002 206 . 13 190 98.5437 . 0.215 . 0.225 . 0.214 . . . . . 0.214 . 20 . 0.922 0.935 'ELECTRON CRYSTALLOGRAPHY' 7.002 8.424 186 . 12 167 96.2366 . 0.223 . 0.441 . 0.212 . . . . . 0.214 . 20 . 0.925 0.807 'ELECTRON CRYSTALLOGRAPHY' 8.424 11.330 152 . 9 137 96.0526 . 0.248 . 0.280 . 0.246 . . . . . 0.244 . 20 . 0.923 0.850 'ELECTRON CRYSTALLOGRAPHY' 11.330 25.924 106 . 8 90 92.4528 . 0.699 . 0.821 . 0.690 . . . . . 1.184 . 20 . 0.677 0.352 # _struct.entry_id 8E52 _struct.title 'MicroED structure of proteinase K recorded on K2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8E52 _struct_keywords.text 'serine protease, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 7 ? SER A 14 ? PRO AAA 112 SER AAA 119 1 ? 8 HELX_P HELX_P2 AA2 HIS A 46 ? GLU A 50 ? HIS AAA 151 GLU AAA 155 5 ? 5 HELX_P HELX_P3 AA3 GLY A 68 ? SER A 79 ? GLY AAA 173 SER AAA 184 1 ? 12 HELX_P HELX_P4 AA4 GLN A 103 ? LYS A 118 ? GLN AAA 208 LYS AAA 223 1 ? 16 HELX_P HELX_P5 AA5 ASN A 119 ? ARG A 121 ? ASN AAA 224 ARG AAA 226 5 ? 3 HELX_P HELX_P6 AA6 SER A 138 ? SER A 151 ? SER AAA 243 SER AAA 256 1 ? 14 HELX_P HELX_P7 AA7 ASP A 165 ? ARG A 167 ? ASP AAA 270 ARG AAA 272 5 ? 3 HELX_P HELX_P8 AA8 GLY A 222 ? LEU A 240 ? GLY AAA 327 LEU AAA 345 1 ? 19 HELX_P HELX_P9 AA9 SER A 247 ? THR A 255 ? SER AAA 352 THR AAA 360 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 123 SG ? ? AAA CYS 139 AAA CYS 228 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf2 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 249 SG ? ? AAA CYS 283 AAA CYS 354 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc1 metalc ? ? A ASP 39 OD1 ? ? ? 1_555 E CA . CA ? ? AAA ASP 144 AAA CA 404 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc2 metalc ? ? A ASP 39 OD2 ? ? ? 1_555 E CA . CA ? ? AAA ASP 144 AAA CA 404 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc3 metalc ? ? A HIS 69 O ? ? ? 1_555 D CA . CA ? ? AAA HIS 174 AAA CA 403 1_555 ? ? ? ? ? ? ? 2.297 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 170 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 275 _struct_mon_prot_cis.auth_asym_id AAA _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 171 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 276 _struct_mon_prot_cis.pdbx_auth_asym_id_2 AAA _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 7 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 2 ? GLN A 3 ? ALA AAA 107 GLN AAA 108 AA1 2 TYR A 23 ? TYR A 24 ? TYR AAA 128 TYR AAA 129 AA2 1 ALA A 53 ? THR A 58 ? ALA AAA 158 THR AAA 163 AA2 2 GLN A 89 ? LYS A 94 ? GLN AAA 194 LYS AAA 199 AA2 3 SER A 33 ? ASP A 39 ? SER AAA 138 ASP AAA 144 AA2 4 GLY A 126 ? LEU A 131 ? GLY AAA 231 LEU AAA 236 AA2 5 VAL A 153 ? ALA A 158 ? VAL AAA 258 ALA AAA 263 AA2 6 CYS A 178 ? SER A 183 ? CYS AAA 283 SER AAA 288 AA2 7 ILE A 201 ? PRO A 204 ? ILE AAA 306 PRO AAA 309 AA3 1 GLY A 135 ? GLY A 136 ? GLY AAA 240 GLY AAA 241 AA3 2 TYR A 169 ? SER A 170 ? TYR AAA 274 SER AAA 275 AA4 1 ILE A 208 ? TRP A 212 ? ILE AAA 313 TRP AAA 317 AA4 2 SER A 216 ? ILE A 220 ? SER AAA 321 ILE AAA 325 AA5 1 ASN A 257 ? LYS A 258 ? ASN AAA 362 LYS AAA 363 AA5 2 LEU A 271 ? LEU A 272 ? LEU AAA 376 LEU AAA 377 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 3 ? N GLN AAA 108 O TYR A 23 ? O TYR AAA 128 AA2 1 2 N VAL A 56 ? N VAL AAA 161 O GLY A 92 ? O GLY AAA 197 AA2 2 3 O PHE A 91 ? O PHE AAA 196 N VAL A 37 ? N VAL AAA 142 AA2 3 4 N TYR A 36 ? N TYR AAA 141 O VAL A 128 ? O VAL AAA 233 AA2 4 5 N LEU A 131 ? N LEU AAA 236 O ALA A 156 ? O ALA AAA 261 AA2 5 6 N VAL A 155 ? N VAL AAA 260 O CYS A 178 ? O CYS AAA 283 AA2 6 7 N GLY A 181 ? N GLY AAA 286 O GLY A 203 ? O GLY AAA 308 AA3 1 2 N GLY A 135 ? N GLY AAA 240 O SER A 170 ? O SER AAA 275 AA4 1 2 N TRP A 212 ? N TRP AAA 317 O SER A 216 ? O SER AAA 321 AA5 1 2 N ASN A 257 ? N ASN AAA 362 O LEU A 272 ? O LEU AAA 377 # _atom_sites.entry_id 8E52 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014799 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014799 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 CA 20 20 8.627 10.442 7.387 0.660 1.590 85.748 1.021 178.437 1.375 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 106 106 ALA ALA AAA . n A 1 2 ALA 2 107 107 ALA ALA AAA . n A 1 3 GLN 3 108 108 GLN GLN AAA . n A 1 4 THR 4 109 109 THR THR AAA . n A 1 5 ASN 5 110 110 ASN ASN AAA . n A 1 6 ALA 6 111 111 ALA ALA AAA . n A 1 7 PRO 7 112 112 PRO PRO AAA . n A 1 8 TRP 8 113 113 TRP TRP AAA . n A 1 9 GLY 9 114 114 GLY GLY AAA . n A 1 10 LEU 10 115 115 LEU LEU AAA . n A 1 11 ALA 11 116 116 ALA ALA AAA . n A 1 12 ARG 12 117 117 ARG ARG AAA . n A 1 13 ILE 13 118 118 ILE ILE AAA . n A 1 14 SER 14 119 119 SER SER AAA . n A 1 15 SER 15 120 120 SER SER AAA . n A 1 16 THR 16 121 121 THR THR AAA . n A 1 17 SER 17 122 122 SER SER AAA . n A 1 18 PRO 18 123 123 PRO PRO AAA . n A 1 19 GLY 19 124 124 GLY GLY AAA . n A 1 20 THR 20 125 125 THR THR AAA . n A 1 21 SER 21 126 126 SER SER AAA . n A 1 22 THR 22 127 127 THR THR AAA . n A 1 23 TYR 23 128 128 TYR TYR AAA . n A 1 24 TYR 24 129 129 TYR TYR AAA . n A 1 25 TYR 25 130 130 TYR TYR AAA . n A 1 26 ASP 26 131 131 ASP ASP AAA . n A 1 27 GLU 27 132 132 GLU GLU AAA . n A 1 28 SER 28 133 133 SER SER AAA . n A 1 29 ALA 29 134 134 ALA ALA AAA . n A 1 30 GLY 30 135 135 GLY GLY AAA . n A 1 31 GLN 31 136 136 GLN GLN AAA . n A 1 32 GLY 32 137 137 GLY GLY AAA . n A 1 33 SER 33 138 138 SER SER AAA . n A 1 34 CYS 34 139 139 CYS CYS AAA . n A 1 35 VAL 35 140 140 VAL VAL AAA . n A 1 36 TYR 36 141 141 TYR TYR AAA . n A 1 37 VAL 37 142 142 VAL VAL AAA . n A 1 38 ILE 38 143 143 ILE ILE AAA . n A 1 39 ASP 39 144 144 ASP ASP AAA . n A 1 40 THR 40 145 145 THR THR AAA . n A 1 41 GLY 41 146 146 GLY GLY AAA . n A 1 42 ILE 42 147 147 ILE ILE AAA . n A 1 43 GLU 43 148 148 GLU GLU AAA . n A 1 44 ALA 44 149 149 ALA ALA AAA . n A 1 45 SER 45 150 150 SER SER AAA . n A 1 46 HIS 46 151 151 HIS HIS AAA . n A 1 47 PRO 47 152 152 PRO PRO AAA . n A 1 48 GLU 48 153 153 GLU GLU AAA . n A 1 49 PHE 49 154 154 PHE PHE AAA . n A 1 50 GLU 50 155 155 GLU GLU AAA . n A 1 51 GLY 51 156 156 GLY GLY AAA . n A 1 52 ARG 52 157 157 ARG ARG AAA . n A 1 53 ALA 53 158 158 ALA ALA AAA . n A 1 54 GLN 54 159 159 GLN GLN AAA . n A 1 55 MET 55 160 160 MET MET AAA . n A 1 56 VAL 56 161 161 VAL VAL AAA . n A 1 57 LYS 57 162 162 LYS LYS AAA . n A 1 58 THR 58 163 163 THR THR AAA . n A 1 59 TYR 59 164 164 TYR TYR AAA . n A 1 60 TYR 60 165 165 TYR TYR AAA . n A 1 61 TYR 61 166 166 TYR TYR AAA . n A 1 62 SER 62 167 167 SER SER AAA . n A 1 63 SER 63 168 168 SER SER AAA . n A 1 64 ARG 64 169 169 ARG ARG AAA . n A 1 65 ASP 65 170 170 ASP ASP AAA . n A 1 66 GLY 66 171 171 GLY GLY AAA . n A 1 67 ASN 67 172 172 ASN ASN AAA . n A 1 68 GLY 68 173 173 GLY GLY AAA . n A 1 69 HIS 69 174 174 HIS HIS AAA . n A 1 70 GLY 70 175 175 GLY GLY AAA . n A 1 71 THR 71 176 176 THR THR AAA . n A 1 72 HIS 72 177 177 HIS HIS AAA . n A 1 73 CYS 73 178 178 CYS CYS AAA . n A 1 74 ALA 74 179 179 ALA ALA AAA . n A 1 75 GLY 75 180 180 GLY GLY AAA . n A 1 76 THR 76 181 181 THR THR AAA . n A 1 77 VAL 77 182 182 VAL VAL AAA . n A 1 78 GLY 78 183 183 GLY GLY AAA . n A 1 79 SER 79 184 184 SER SER AAA . n A 1 80 ARG 80 185 185 ARG ARG AAA . n A 1 81 THR 81 186 186 THR THR AAA . n A 1 82 TYR 82 187 187 TYR TYR AAA . n A 1 83 GLY 83 188 188 GLY GLY AAA . n A 1 84 VAL 84 189 189 VAL VAL AAA . n A 1 85 ALA 85 190 190 ALA ALA AAA . n A 1 86 LYS 86 191 191 LYS LYS AAA . n A 1 87 LYS 87 192 192 LYS LYS AAA . n A 1 88 THR 88 193 193 THR THR AAA . n A 1 89 GLN 89 194 194 GLN GLN AAA . n A 1 90 LEU 90 195 195 LEU LEU AAA . n A 1 91 PHE 91 196 196 PHE PHE AAA . n A 1 92 GLY 92 197 197 GLY GLY AAA . n A 1 93 VAL 93 198 198 VAL VAL AAA . n A 1 94 LYS 94 199 199 LYS LYS AAA . n A 1 95 VAL 95 200 200 VAL VAL AAA . n A 1 96 LEU 96 201 201 LEU LEU AAA . n A 1 97 ASP 97 202 202 ASP ASP AAA . n A 1 98 ASP 98 203 203 ASP ASP AAA . n A 1 99 ASN 99 204 204 ASN ASN AAA . n A 1 100 GLY 100 205 205 GLY GLY AAA . n A 1 101 SER 101 206 206 SER SER AAA . n A 1 102 GLY 102 207 207 GLY GLY AAA . n A 1 103 GLN 103 208 208 GLN GLN AAA . n A 1 104 TYR 104 209 209 TYR TYR AAA . n A 1 105 SER 105 210 210 SER SER AAA . n A 1 106 THR 106 211 211 THR THR AAA . n A 1 107 ILE 107 212 212 ILE ILE AAA . n A 1 108 ILE 108 213 213 ILE ILE AAA . n A 1 109 ALA 109 214 214 ALA ALA AAA . n A 1 110 GLY 110 215 215 GLY GLY AAA . n A 1 111 MET 111 216 216 MET MET AAA . n A 1 112 ASP 112 217 217 ASP ASP AAA . n A 1 113 PHE 113 218 218 PHE PHE AAA . n A 1 114 VAL 114 219 219 VAL VAL AAA . n A 1 115 ALA 115 220 220 ALA ALA AAA . n A 1 116 SER 116 221 221 SER SER AAA . n A 1 117 ASP 117 222 222 ASP ASP AAA . n A 1 118 LYS 118 223 223 LYS LYS AAA . n A 1 119 ASN 119 224 224 ASN ASN AAA . n A 1 120 ASN 120 225 225 ASN ASN AAA . n A 1 121 ARG 121 226 226 ARG ARG AAA . n A 1 122 ASN 122 227 227 ASN ASN AAA . n A 1 123 CYS 123 228 228 CYS CYS AAA . n A 1 124 PRO 124 229 229 PRO PRO AAA . n A 1 125 LYS 125 230 230 LYS LYS AAA . n A 1 126 GLY 126 231 231 GLY GLY AAA . n A 1 127 VAL 127 232 232 VAL VAL AAA . n A 1 128 VAL 128 233 233 VAL VAL AAA . n A 1 129 ALA 129 234 234 ALA ALA AAA . n A 1 130 SER 130 235 235 SER SER AAA . n A 1 131 LEU 131 236 236 LEU LEU AAA . n A 1 132 SER 132 237 237 SER SER AAA . n A 1 133 LEU 133 238 238 LEU LEU AAA . n A 1 134 GLY 134 239 239 GLY GLY AAA . n A 1 135 GLY 135 240 240 GLY GLY AAA . n A 1 136 GLY 136 241 241 GLY GLY AAA . n A 1 137 TYR 137 242 242 TYR TYR AAA . n A 1 138 SER 138 243 243 SER SER AAA . n A 1 139 SER 139 244 244 SER SER AAA . n A 1 140 SER 140 245 245 SER SER AAA . n A 1 141 VAL 141 246 246 VAL VAL AAA . n A 1 142 ASN 142 247 247 ASN ASN AAA . n A 1 143 SER 143 248 248 SER SER AAA . n A 1 144 ALA 144 249 249 ALA ALA AAA . n A 1 145 ALA 145 250 250 ALA ALA AAA . n A 1 146 ALA 146 251 251 ALA ALA AAA . n A 1 147 ARG 147 252 252 ARG ARG AAA . n A 1 148 LEU 148 253 253 LEU LEU AAA . n A 1 149 GLN 149 254 254 GLN GLN AAA . n A 1 150 SER 150 255 255 SER SER AAA . n A 1 151 SER 151 256 256 SER SER AAA . n A 1 152 GLY 152 257 257 GLY GLY AAA . n A 1 153 VAL 153 258 258 VAL VAL AAA . n A 1 154 MET 154 259 259 MET MET AAA . n A 1 155 VAL 155 260 260 VAL VAL AAA . n A 1 156 ALA 156 261 261 ALA ALA AAA . n A 1 157 VAL 157 262 262 VAL VAL AAA . n A 1 158 ALA 158 263 263 ALA ALA AAA . n A 1 159 ALA 159 264 264 ALA ALA AAA . n A 1 160 GLY 160 265 265 GLY GLY AAA . n A 1 161 ASN 161 266 266 ASN ASN AAA . n A 1 162 ASN 162 267 267 ASN ASN AAA . n A 1 163 ASN 163 268 268 ASN ASN AAA . n A 1 164 ALA 164 269 269 ALA ALA AAA . n A 1 165 ASP 165 270 270 ASP ASP AAA . n A 1 166 ALA 166 271 271 ALA ALA AAA . n A 1 167 ARG 167 272 272 ARG ARG AAA . n A 1 168 ASN 168 273 273 ASN ASN AAA . n A 1 169 TYR 169 274 274 TYR TYR AAA . n A 1 170 SER 170 275 275 SER SER AAA . n A 1 171 PRO 171 276 276 PRO PRO AAA . n A 1 172 ALA 172 277 277 ALA ALA AAA . n A 1 173 SER 173 278 278 SER SER AAA . n A 1 174 GLU 174 279 279 GLU GLU AAA . n A 1 175 PRO 175 280 280 PRO PRO AAA . n A 1 176 SER 176 281 281 SER SER AAA . n A 1 177 VAL 177 282 282 VAL VAL AAA . n A 1 178 CYS 178 283 283 CYS CYS AAA . n A 1 179 THR 179 284 284 THR THR AAA . n A 1 180 VAL 180 285 285 VAL VAL AAA . n A 1 181 GLY 181 286 286 GLY GLY AAA . n A 1 182 ALA 182 287 287 ALA ALA AAA . n A 1 183 SER 183 288 288 SER SER AAA . n A 1 184 ASP 184 289 289 ASP ASP AAA . n A 1 185 ARG 185 290 290 ARG ARG AAA . n A 1 186 TYR 186 291 291 TYR TYR AAA . n A 1 187 ASP 187 292 292 ASP ASP AAA . n A 1 188 ARG 188 293 293 ARG ARG AAA . n A 1 189 ARG 189 294 294 ARG ARG AAA . n A 1 190 SER 190 295 295 SER SER AAA . n A 1 191 SER 191 296 296 SER SER AAA . n A 1 192 PHE 192 297 297 PHE PHE AAA . n A 1 193 SER 193 298 298 SER SER AAA . n A 1 194 ASN 194 299 299 ASN ASN AAA . n A 1 195 TYR 195 300 300 TYR TYR AAA . n A 1 196 GLY 196 301 301 GLY GLY AAA . n A 1 197 SER 197 302 302 SER SER AAA . n A 1 198 VAL 198 303 303 VAL VAL AAA . n A 1 199 LEU 199 304 304 LEU LEU AAA . n A 1 200 ASP 200 305 305 ASP ASP AAA . n A 1 201 ILE 201 306 306 ILE ILE AAA . n A 1 202 PHE 202 307 307 PHE PHE AAA . n A 1 203 GLY 203 308 308 GLY GLY AAA . n A 1 204 PRO 204 309 309 PRO PRO AAA . n A 1 205 GLY 205 310 310 GLY GLY AAA . n A 1 206 THR 206 311 311 THR THR AAA . n A 1 207 SER 207 312 312 SER SER AAA . n A 1 208 ILE 208 313 313 ILE ILE AAA . n A 1 209 LEU 209 314 314 LEU LEU AAA . n A 1 210 SER 210 315 315 SER SER AAA . n A 1 211 THR 211 316 316 THR THR AAA . n A 1 212 TRP 212 317 317 TRP TRP AAA . n A 1 213 ILE 213 318 318 ILE ILE AAA . n A 1 214 GLY 214 319 319 GLY GLY AAA . n A 1 215 GLY 215 320 320 GLY GLY AAA . n A 1 216 SER 216 321 321 SER SER AAA . n A 1 217 THR 217 322 322 THR THR AAA . n A 1 218 ARG 218 323 323 ARG ARG AAA . n A 1 219 SER 219 324 324 SER SER AAA . n A 1 220 ILE 220 325 325 ILE ILE AAA . n A 1 221 SER 221 326 326 SER SER AAA . n A 1 222 GLY 222 327 327 GLY GLY AAA . n A 1 223 THR 223 328 328 THR THR AAA . n A 1 224 SER 224 329 329 SER SER AAA . n A 1 225 MET 225 330 330 MET MET AAA . n A 1 226 ALA 226 331 331 ALA ALA AAA . n A 1 227 THR 227 332 332 THR THR AAA . n A 1 228 PRO 228 333 333 PRO PRO AAA . n A 1 229 HIS 229 334 334 HIS HIS AAA . n A 1 230 VAL 230 335 335 VAL VAL AAA . n A 1 231 ALA 231 336 336 ALA ALA AAA . n A 1 232 GLY 232 337 337 GLY GLY AAA . n A 1 233 LEU 233 338 338 LEU LEU AAA . n A 1 234 ALA 234 339 339 ALA ALA AAA . n A 1 235 ALA 235 340 340 ALA ALA AAA . n A 1 236 TYR 236 341 341 TYR TYR AAA . n A 1 237 LEU 237 342 342 LEU LEU AAA . n A 1 238 MET 238 343 343 MET MET AAA . n A 1 239 THR 239 344 344 THR THR AAA . n A 1 240 LEU 240 345 345 LEU LEU AAA . n A 1 241 GLY 241 346 346 GLY GLY AAA . n A 1 242 LYS 242 347 347 LYS LYS AAA . n A 1 243 THR 243 348 348 THR THR AAA . n A 1 244 THR 244 349 349 THR THR AAA . n A 1 245 ALA 245 350 350 ALA ALA AAA . n A 1 246 ALA 246 351 351 ALA ALA AAA . n A 1 247 SER 247 352 352 SER SER AAA . n A 1 248 ALA 248 353 353 ALA ALA AAA . n A 1 249 CYS 249 354 354 CYS CYS AAA . n A 1 250 ARG 250 355 355 ARG ARG AAA . n A 1 251 TYR 251 356 356 TYR TYR AAA . n A 1 252 ILE 252 357 357 ILE ILE AAA . n A 1 253 ALA 253 358 358 ALA ALA AAA . n A 1 254 ASP 254 359 359 ASP ASP AAA . n A 1 255 THR 255 360 360 THR THR AAA . n A 1 256 ALA 256 361 361 ALA ALA AAA . n A 1 257 ASN 257 362 362 ASN ASN AAA . n A 1 258 LYS 258 363 363 LYS LYS AAA . n A 1 259 GLY 259 364 364 GLY GLY AAA . n A 1 260 ASP 260 365 365 ASP ASP AAA . n A 1 261 LEU 261 366 366 LEU LEU AAA . n A 1 262 SER 262 367 367 SER SER AAA . n A 1 263 ASN 263 368 368 ASN ASN AAA . n A 1 264 ILE 264 369 369 ILE ILE AAA . n A 1 265 PRO 265 370 370 PRO PRO AAA . n A 1 266 PHE 266 371 371 PHE PHE AAA . n A 1 267 GLY 267 372 372 GLY GLY AAA . n A 1 268 THR 268 373 373 THR THR AAA . n A 1 269 VAL 269 374 374 VAL VAL AAA . n A 1 270 ASN 270 375 375 ASN ASN AAA . n A 1 271 LEU 271 376 376 LEU LEU AAA . n A 1 272 LEU 272 377 377 LEU LEU AAA . n A 1 273 ALA 273 378 378 ALA ALA AAA . n A 1 274 TYR 274 379 379 TYR TYR AAA . n A 1 275 ASN 275 380 380 ASN ASN AAA . n A 1 276 ASN 276 381 381 ASN ASN AAA . n A 1 277 TYR 277 382 382 TYR TYR AAA . n A 1 278 GLN 278 383 383 GLN GLN AAA . n A 1 279 ALA 279 384 384 ALA ALA AAA . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email tgonen@ucla.edu _pdbx_contact_author.name_first Tamir _pdbx_contact_author.name_last Gonen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9254-4069 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 401 401 CA CA AAA . C 2 CA 1 402 402 CA CA AAA . D 2 CA 1 403 403 CA CA AAA . E 2 CA 1 404 404 CA CA AAA . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OD1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id ASP _pdbx_struct_conn_angle.ptnr1_label_seq_id 39 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id AAA _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr1_auth_seq_id 144 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id CA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id AAA _pdbx_struct_conn_angle.ptnr2_auth_comp_id CA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 404 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OD2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id ASP _pdbx_struct_conn_angle.ptnr3_label_seq_id 39 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id AAA _pdbx_struct_conn_angle.ptnr3_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr3_auth_seq_id 144 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 51.2 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-21 2 'Structure model' 1 1 2022-10-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author 'Garib N. Murshudov' _software.contact_author_email garib@mrc-lmb.cam.ac.uk _software.date 2019-08-22 _software.description '(un)restrained refinement or idealisation of macromolecular structures' _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0257 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8E52 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 8E52 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 20.32 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Maximum liklihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8E52 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Serine protease' _em_entity_assembly.name 'Proteinase K' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 8E52 _em_image_scans.id 1 _em_image_scans.dimension_height 1470 _em_image_scans.dimension_width 1650 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 10 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 8E52 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 77 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 95 _em_vitrification.instrument 'LEICA PLUNGER' _em_vitrification.entry_id 8E52 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8E52 _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP AAA 144 ? ? -176.59 -158.94 2 1 PRO AAA 152 ? ? -48.79 -17.68 3 1 CYS AAA 228 ? ? -140.99 53.56 4 1 SER AAA 243 ? ? -162.65 99.96 5 1 SER AAA 321 ? ? -108.33 -169.56 6 1 PHE AAA 371 ? ? -29.55 128.83 7 1 ASN AAA 375 ? ? -105.92 68.78 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 67.57 _em_3d_crystal_entity.length_b 67.57 _em_3d_crystal_entity.length_c 100.91 _em_3d_crystal_entity.space_group_name 'P 43 21 2' _em_3d_crystal_entity.space_group_num 96 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 590 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 83 _em_diffraction_shell.high_resolution 2.7 _em_diffraction_shell.low_resolution 3.4 _em_diffraction_shell.multiplicity 6 _em_diffraction_shell.num_structure_factors 2499 _em_diffraction_shell.phase_residual 33 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 83 _em_diffraction_stats.high_resolution 2.7 _em_diffraction_stats.num_intensities_measured 30326 _em_diffraction_stats.num_structure_factors 5453 _em_diffraction_stats.overall_phase_error 28 _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria None _em_diffraction_stats.r_merge 64 _em_diffraction_stats.r_sym 30 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.0289 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 37998 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Parengyodontium album' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 37998 _em_entity_assembly_recombinant.organism 'Parengyodontium album' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 0.025 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 BASE (4k x 4k)' _em_image_recording.num_diffraction_images 1600 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1 _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? AIMLESS ? 1 ? ? 12 RECONSTRUCTION ? REFMAC ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 50 _em_specimen.details Microcrystals _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CALCIUM ION' _pdbx_entity_nonpoly.comp_id CA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #