HEADER HYDROLASE, VIRAL PROTEIN/INHIBITOR 22-AUG-22 8E6B TITLE CRYSTAL STRUCTURE OF MERS 3CL PROTEASE IN COMPLEX WITH A DIMETHYL TITLE 2 SULFINYL BENZENE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF1A PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FULL LENGTH; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 1335626; SOURCE 5 GENE: ORF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASE, PROTEASE INHHIBITORS, HYDROLASE, VIRAL PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,S.LOVELL,K.P.BATTAILE,C.S.DAMPALLA,W.C.GROUTAS REVDAT 4 01-MAY-24 8E6B 1 JRNL REVDAT 3 25-OCT-23 8E6B 1 REMARK REVDAT 2 26-APR-23 8E6B 1 JRNL REVDAT 1 07-SEP-22 8E6B 0 JRNL AUTH C.S.DAMPALLA,M.J.MILLER,Y.KIM,A.ZABIEGALA,H.N.NGUYEN, JRNL AUTH 2 T.K.MADDEN,H.A.THURMAN,A.J.MACHEN,A.COOPER,L.LIU, JRNL AUTH 3 K.P.BATTAILE,S.LOVELL,K.O.CHANG,W.C.GROUTAS JRNL TITL STRUCTURE-GUIDED DESIGN OF DIRECT-ACTING ANTIVIRALS THAT JRNL TITL 2 EXPLOIT THE GEM-DIMETHYL EFFECT AND POTENTLY INHIBIT 3CL JRNL TITL 3 PROTEASES OF SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2 JRNL TITL 4 (SARS-COV-2) AND MIDDLE EAST RESPIRATORY SYNDROME JRNL TITL 5 CORONAVIRUS (MERS-COV). JRNL REF EUR.J.MED.CHEM. V. 254 15376 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 37080108 JRNL DOI 10.1016/J.EJMECH.2023.115376 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 78351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6800 - 4.6400 0.99 2933 138 0.1467 0.1609 REMARK 3 2 4.6400 - 3.6900 0.99 2885 162 0.1330 0.1608 REMARK 3 3 3.6900 - 3.2200 0.98 2847 147 0.1696 0.1698 REMARK 3 4 3.2200 - 2.9300 0.97 2824 121 0.1917 0.2219 REMARK 3 5 2.9300 - 2.7200 0.98 2834 166 0.1838 0.1983 REMARK 3 6 2.7200 - 2.5600 0.98 2820 174 0.1859 0.2191 REMARK 3 7 2.5600 - 2.4300 0.97 2805 149 0.1888 0.2087 REMARK 3 8 2.4300 - 2.3200 0.97 2833 130 0.1897 0.2212 REMARK 3 9 2.3200 - 2.2600 0.95 2033 111 0.1730 0.1942 REMARK 3 10 2.2300 - 2.1600 0.97 2417 118 0.1810 0.1928 REMARK 3 11 2.1600 - 2.0900 0.97 2820 160 0.1739 0.2250 REMARK 3 12 2.0900 - 2.0300 0.97 2839 146 0.1692 0.2209 REMARK 3 13 2.0300 - 1.9800 0.97 2822 109 0.1745 0.2030 REMARK 3 14 1.9800 - 1.9300 0.97 2822 144 0.1782 0.1994 REMARK 3 15 1.9300 - 1.8900 0.97 2773 167 0.1750 0.1972 REMARK 3 16 1.8900 - 1.8500 0.96 2778 150 0.1682 0.2261 REMARK 3 17 1.8500 - 1.8100 0.97 2803 114 0.1816 0.2128 REMARK 3 18 1.8100 - 1.7700 0.96 2777 154 0.1890 0.2275 REMARK 3 19 1.7700 - 1.7400 0.96 2806 136 0.1946 0.2136 REMARK 3 20 1.7400 - 1.7100 0.96 2739 128 0.2070 0.2468 REMARK 3 21 1.7100 - 1.6900 0.96 2805 146 0.2164 0.2924 REMARK 3 22 1.6900 - 1.6600 0.96 2744 134 0.2171 0.2767 REMARK 3 23 1.6600 - 1.6400 0.96 2815 126 0.2297 0.2658 REMARK 3 24 1.6400 - 1.6100 0.95 2723 157 0.2290 0.2655 REMARK 3 25 1.6100 - 1.5900 0.96 2774 155 0.2390 0.2642 REMARK 3 26 1.5900 - 1.5700 0.95 2713 160 0.2474 0.2566 REMARK 3 27 1.5700 - 1.5500 0.95 2730 135 0.2473 0.2735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0462 -25.5856 2.9645 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1668 REMARK 3 T33: 0.1383 T12: -0.0102 REMARK 3 T13: 0.0249 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.1729 L22: 1.4197 REMARK 3 L33: 1.3615 L12: -0.1948 REMARK 3 L13: 0.7582 L23: 0.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: 0.2060 S13: -0.0555 REMARK 3 S21: -0.1126 S22: -0.0753 S23: 0.0617 REMARK 3 S31: 0.0294 S32: 0.0187 S33: -0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0244 -18.5075 -12.3558 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.4172 REMARK 3 T33: 0.1965 T12: 0.0630 REMARK 3 T13: -0.0549 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 6.3138 L22: 6.4571 REMARK 3 L33: 3.5346 L12: -0.2509 REMARK 3 L13: 0.6423 L23: 1.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.5704 S13: 0.1513 REMARK 3 S21: -0.7093 S22: 0.0268 S23: 0.2096 REMARK 3 S31: -0.5233 S32: -0.4908 S33: -0.1193 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5707 -24.0589 3.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1623 REMARK 3 T33: 0.1328 T12: 0.0025 REMARK 3 T13: -0.0143 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.7999 L22: 1.5222 REMARK 3 L33: 1.1625 L12: 0.1144 REMARK 3 L13: 0.1562 L23: 0.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.1541 S13: -0.0454 REMARK 3 S21: -0.0908 S22: -0.0236 S23: 0.0524 REMARK 3 S31: 0.0351 S32: 0.0011 S33: 0.0155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7334 -9.0975 9.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.2679 REMARK 3 T33: 0.3306 T12: 0.0146 REMARK 3 T13: -0.0044 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.1228 L22: 1.1307 REMARK 3 L33: 4.8232 L12: -0.1968 REMARK 3 L13: 0.9929 L23: 0.9133 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: 0.0040 S13: 0.3425 REMARK 3 S21: -0.1697 S22: 0.0050 S23: -0.0349 REMARK 3 S31: -0.7181 S32: -0.1797 S33: 0.1565 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2640 -13.6801 33.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.2034 REMARK 3 T33: 0.1534 T12: -0.0008 REMARK 3 T13: -0.0102 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 2.6762 L22: 2.0928 REMARK 3 L33: 1.9781 L12: -0.7464 REMARK 3 L13: -0.0435 L23: 0.1003 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.2400 S13: 0.1804 REMARK 3 S21: 0.1017 S22: -0.0239 S23: -0.0009 REMARK 3 S31: -0.0911 S32: 0.0393 S33: 0.0457 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6847 -38.2985 17.8972 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1867 REMARK 3 T33: 0.1910 T12: 0.0086 REMARK 3 T13: 0.0306 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.1601 L22: 2.5959 REMARK 3 L33: 0.7264 L12: -0.9831 REMARK 3 L13: 0.6812 L23: -0.7621 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.1219 S13: -0.3034 REMARK 3 S21: 0.0693 S22: 0.0003 S23: 0.0063 REMARK 3 S31: 0.1274 S32: 0.0157 S33: -0.0308 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1015 -27.1106 15.6044 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1496 REMARK 3 T33: 0.1450 T12: 0.0043 REMARK 3 T13: 0.0021 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.7937 L22: 1.9240 REMARK 3 L33: 1.0918 L12: -0.2069 REMARK 3 L13: -0.0799 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0470 S13: -0.0391 REMARK 3 S21: -0.0355 S22: 0.0424 S23: -0.0236 REMARK 3 S31: 0.0363 S32: 0.0431 S33: -0.0355 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9662 -20.0553 26.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.2692 REMARK 3 T33: 0.2964 T12: 0.0027 REMARK 3 T13: -0.0276 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.7670 L22: 3.3450 REMARK 3 L33: 0.9105 L12: -0.8941 REMARK 3 L13: 0.2903 L23: -1.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.1849 S12: -0.2149 S13: 0.0030 REMARK 3 S21: 0.7379 S22: 0.0755 S23: 0.0201 REMARK 3 S31: -0.2225 S32: 0.0034 S33: 0.0899 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9295 -0.1637 11.5272 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.1438 REMARK 3 T33: 0.2330 T12: 0.0058 REMARK 3 T13: -0.0087 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.1155 L22: 2.4894 REMARK 3 L33: 1.9513 L12: 0.7018 REMARK 3 L13: 0.4471 L23: -0.0626 REMARK 3 S TENSOR REMARK 3 S11: -0.1091 S12: 0.0379 S13: 0.3546 REMARK 3 S21: -0.0192 S22: 0.0700 S23: 0.0499 REMARK 3 S31: -0.1966 S32: -0.1181 S33: 0.0273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 105.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 2000 MME, 0.15 M REMARK 280 POTASSIUM BROMIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.97150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 49.65100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET A 305 REMARK 465 GLN A 306 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 MET B 305 REMARK 465 GLN B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 50 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 153 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 27 -167.40 -166.59 REMARK 500 ASP A 33 -131.03 53.78 REMARK 500 GLN A 48 -8.42 -157.88 REMARK 500 ASP A 51 74.11 -151.86 REMARK 500 ALA A 220 28.40 -144.33 REMARK 500 LEU B 27 -166.17 -161.79 REMARK 500 ASP B 33 -131.93 52.79 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8E6B A 1 306 UNP A0A1L2E0X0_9BETC DBREF2 8E6B A A0A1L2E0X0 3248 3553 DBREF1 8E6B B 1 306 UNP A0A1L2E0X0_9BETC DBREF2 8E6B B A0A1L2E0X0 3248 3553 SEQADV 8E6B MET A -6 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A -5 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A -4 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A -3 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A -2 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A -1 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS A 0 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B MET B -6 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B -5 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B -4 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B -3 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B -2 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B -1 UNP A0A1L2E0X EXPRESSION TAG SEQADV 8E6B HIS B 0 UNP A0A1L2E0X EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER GLY LEU VAL LYS MET SEQRES 2 A 313 SER HIS PRO SER GLY ASP VAL GLU ALA CYS MET VAL GLN SEQRES 3 A 313 VAL THR CYS GLY SER MET THR LEU ASN GLY LEU TRP LEU SEQRES 4 A 313 ASP ASN THR VAL TRP CYS PRO ARG HIS VAL MET CYS PRO SEQRES 5 A 313 ALA ASP GLN LEU SER ASP PRO ASN TYR ASP ALA LEU LEU SEQRES 6 A 313 ILE SER MET THR ASN HIS SER PHE SER VAL GLN LYS HIS SEQRES 7 A 313 ILE GLY ALA PRO ALA ASN LEU ARG VAL VAL GLY HIS ALA SEQRES 8 A 313 MET GLN GLY THR LEU LEU LYS LEU THR VAL ASP VAL ALA SEQRES 9 A 313 ASN PRO SER THR PRO ALA TYR THR PHE THR THR VAL LYS SEQRES 10 A 313 PRO GLY ALA ALA PHE SER VAL LEU ALA CYS TYR ASN GLY SEQRES 11 A 313 ARG PRO THR GLY THR PHE THR VAL VAL MET ARG PRO ASN SEQRES 12 A 313 TYR THR ILE LYS GLY SER PHE LEU CYS GLY SER CYS GLY SEQRES 13 A 313 SER VAL GLY TYR THR LYS GLU GLY SER VAL ILE ASN PHE SEQRES 14 A 313 CYS TYR MET HIS GLN MET GLU LEU ALA ASN GLY THR HIS SEQRES 15 A 313 THR GLY SER ALA PHE ASP GLY THR MET TYR GLY ALA PHE SEQRES 16 A 313 MET ASP LYS GLN VAL HIS GLN VAL GLN LEU THR ASP LYS SEQRES 17 A 313 TYR CYS SER VAL ASN VAL VAL ALA TRP LEU TYR ALA ALA SEQRES 18 A 313 ILE LEU ASN GLY CYS ALA TRP PHE VAL LYS PRO ASN ARG SEQRES 19 A 313 THR SER VAL VAL SER PHE ASN GLU TRP ALA LEU ALA ASN SEQRES 20 A 313 GLN PHE THR GLU PHE VAL GLY THR GLN SER VAL ASP MET SEQRES 21 A 313 LEU ALA VAL LYS THR GLY VAL ALA ILE GLU GLN LEU LEU SEQRES 22 A 313 TYR ALA ILE GLN GLN LEU TYR THR GLY PHE GLN GLY LYS SEQRES 23 A 313 GLN ILE LEU GLY SER THR MET LEU GLU ASP GLU PHE THR SEQRES 24 A 313 PRO GLU ASP VAL ASN MET GLN ILE MET GLY VAL VAL MET SEQRES 25 A 313 GLN SEQRES 1 B 313 MET HIS HIS HIS HIS HIS HIS SER GLY LEU VAL LYS MET SEQRES 2 B 313 SER HIS PRO SER GLY ASP VAL GLU ALA CYS MET VAL GLN SEQRES 3 B 313 VAL THR CYS GLY SER MET THR LEU ASN GLY LEU TRP LEU SEQRES 4 B 313 ASP ASN THR VAL TRP CYS PRO ARG HIS VAL MET CYS PRO SEQRES 5 B 313 ALA ASP GLN LEU SER ASP PRO ASN TYR ASP ALA LEU LEU SEQRES 6 B 313 ILE SER MET THR ASN HIS SER PHE SER VAL GLN LYS HIS SEQRES 7 B 313 ILE GLY ALA PRO ALA ASN LEU ARG VAL VAL GLY HIS ALA SEQRES 8 B 313 MET GLN GLY THR LEU LEU LYS LEU THR VAL ASP VAL ALA SEQRES 9 B 313 ASN PRO SER THR PRO ALA TYR THR PHE THR THR VAL LYS SEQRES 10 B 313 PRO GLY ALA ALA PHE SER VAL LEU ALA CYS TYR ASN GLY SEQRES 11 B 313 ARG PRO THR GLY THR PHE THR VAL VAL MET ARG PRO ASN SEQRES 12 B 313 TYR THR ILE LYS GLY SER PHE LEU CYS GLY SER CYS GLY SEQRES 13 B 313 SER VAL GLY TYR THR LYS GLU GLY SER VAL ILE ASN PHE SEQRES 14 B 313 CYS TYR MET HIS GLN MET GLU LEU ALA ASN GLY THR HIS SEQRES 15 B 313 THR GLY SER ALA PHE ASP GLY THR MET TYR GLY ALA PHE SEQRES 16 B 313 MET ASP LYS GLN VAL HIS GLN VAL GLN LEU THR ASP LYS SEQRES 17 B 313 TYR CYS SER VAL ASN VAL VAL ALA TRP LEU TYR ALA ALA SEQRES 18 B 313 ILE LEU ASN GLY CYS ALA TRP PHE VAL LYS PRO ASN ARG SEQRES 19 B 313 THR SER VAL VAL SER PHE ASN GLU TRP ALA LEU ALA ASN SEQRES 20 B 313 GLN PHE THR GLU PHE VAL GLY THR GLN SER VAL ASP MET SEQRES 21 B 313 LEU ALA VAL LYS THR GLY VAL ALA ILE GLU GLN LEU LEU SEQRES 22 B 313 TYR ALA ILE GLN GLN LEU TYR THR GLY PHE GLN GLY LYS SEQRES 23 B 313 GLN ILE LEU GLY SER THR MET LEU GLU ASP GLU PHE THR SEQRES 24 B 313 PRO GLU ASP VAL ASN MET GLN ILE MET GLY VAL VAL MET SEQRES 25 B 313 GLN HET URR A 401 34 HET UO9 A 402 34 HET URR B 401 34 HET UO9 B 402 34 HETNAM URR N~2~-(ETHOXYCARBONYL)-N-{(1S,2S)-1-HYDROXY-3-[(3S)-2- HETNAM 2 URR OXOPYRROLIDIN-3-YL]-1-SULFANYLPROPAN-2-YL}-L- HETNAM 3 URR LEUCINAMIDE HETNAM UO9 (2~{S})-2-[[(2~{S})-4-METHYL-2-[[2-METHYL-2- HETNAM 2 UO9 [OXIDANYL(PHENYL)-$L^{3}- HETNAM 3 UO9 SULFANYL]PROPOXY]CARBONYLAMINO]PENTANOYL]AMINO]-1- HETNAM 4 UO9 OXIDANYL-3-[(3~{S})-2-OXIDANYLIDENEPYRROLIDIN-3- HETNAM 5 UO9 YL]PROPANE-1-SULFONIC ACID FORMUL 3 URR 2(C24 H37 N3 O9 S2) FORMUL 4 UO9 2(C24 H37 N3 O9 S2) FORMUL 7 HOH *311(H2 O) HELIX 1 AA1 SER A 10 ALA A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 PRO A 45 LEU A 49 5 5 HELIX 4 AA4 ASN A 53 MET A 61 1 9 HELIX 5 AA5 THR A 62 HIS A 64 5 3 HELIX 6 AA6 CYS A 203 ASN A 217 1 15 HELIX 7 AA7 SER A 229 ASN A 240 1 12 HELIX 8 AA8 THR A 248 GLY A 259 1 12 HELIX 9 AA9 ALA A 261 TYR A 273 1 13 HELIX 10 AB1 THR A 292 GLY A 302 1 11 HELIX 11 AB2 SER B 10 ALA B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 PRO B 45 LEU B 49 5 5 HELIX 14 AB5 ASN B 53 MET B 61 1 9 HELIX 15 AB6 THR B 62 HIS B 64 5 3 HELIX 16 AB7 CYS B 203 ASN B 217 1 15 HELIX 17 AB8 SER B 229 ASN B 240 1 12 HELIX 18 AB9 THR B 248 GLY B 259 1 12 HELIX 19 AC1 ALA B 261 THR B 274 1 14 HELIX 20 AC2 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 ALA A 76 LEU A 78 0 SHEET 2 AA1 7 PHE A 66 LYS A 70 -1 N LYS A 70 O ALA A 76 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 MET A 25 LEU A 32 -1 O MET A 25 N CYS A 22 SHEET 5 AA1 7 THR A 35 PRO A 39 -1 O THR A 35 N LEU A 32 SHEET 6 AA1 7 LEU A 89 VAL A 94 -1 O LEU A 90 N CYS A 38 SHEET 7 AA1 7 VAL A 80 GLN A 86 -1 N ALA A 84 O LYS A 91 SHEET 1 AA2 5 TYR A 104 PHE A 106 0 SHEET 2 AA2 5 VAL A 159 GLU A 169 1 O PHE A 162 N THR A 105 SHEET 3 AA2 5 VAL A 151 GLU A 156 -1 N THR A 154 O ASN A 161 SHEET 4 AA2 5 ALA A 114 TYR A 121 -1 N SER A 116 O TYR A 153 SHEET 5 AA2 5 ARG A 124 VAL A 132 -1 O THR A 126 N ALA A 119 SHEET 1 AA3 3 TYR A 104 PHE A 106 0 SHEET 2 AA3 3 VAL A 159 GLU A 169 1 O PHE A 162 N THR A 105 SHEET 3 AA3 3 HIS A 175 SER A 178 -1 O SER A 178 N MET A 165 SHEET 1 AA4 7 ALA B 76 LEU B 78 0 SHEET 2 AA4 7 PHE B 66 LYS B 70 -1 N VAL B 68 O LEU B 78 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N GLN B 19 O GLN B 69 SHEET 4 AA4 7 MET B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 THR B 35 PRO B 39 -1 O THR B 35 N LEU B 32 SHEET 6 AA4 7 LEU B 89 VAL B 94 -1 O LEU B 92 N VAL B 36 SHEET 7 AA4 7 VAL B 80 GLN B 86 -1 N VAL B 81 O THR B 93 SHEET 1 AA5 5 TYR B 104 PHE B 106 0 SHEET 2 AA5 5 VAL B 159 GLU B 169 1 O PHE B 162 N THR B 105 SHEET 3 AA5 5 VAL B 151 GLU B 156 -1 N THR B 154 O ASN B 161 SHEET 4 AA5 5 ALA B 114 TYR B 121 -1 N SER B 116 O TYR B 153 SHEET 5 AA5 5 ARG B 124 VAL B 132 -1 O PHE B 129 N VAL B 117 SHEET 1 AA6 3 TYR B 104 PHE B 106 0 SHEET 2 AA6 3 VAL B 159 GLU B 169 1 O PHE B 162 N THR B 105 SHEET 3 AA6 3 HIS B 175 SER B 178 -1 O SER B 178 N MET B 165 LINK SG CYS A 148 C14AURR A 401 1555 1555 1.81 LINK SG CYS A 148 C14BUO9 A 402 1555 1555 1.80 LINK SG CYS B 148 C14AURR B 401 1555 1555 1.80 LINK SG CYS B 148 C14BUO9 B 402 1555 1555 1.81 CRYST1 49.651 105.943 58.213 90.00 108.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020141 0.000000 0.006892 0.00000 SCALE2 0.000000 0.009439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018156 0.00000