HEADER TRANSFERASE/DNA 26-AUG-22 8E9A TITLE CRYSTAL STRUCTURE OF ASFVPOLX IN COMPLEX WITH 10-23 DNAZYME AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPAIR DNA POLYMERASE X; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL X,ASFVPOLX; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA/RNA (52-MER); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS BA71V; SOURCE 3 ORGANISM_TAXID: 10498; SOURCE 4 STRAIN: BADAJOZ 1971 VERO-ADAPTED; SOURCE 5 GENE: BA71V-97, O174L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS DNAZYME, DNA, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.R.CRAMER,A.R.ROBART,A.I.KAYA REVDAT 3 13-MAR-24 8E9A 1 SOURCE REVDAT 2 25-OCT-23 8E9A 1 REMARK REVDAT 1 21-JUN-23 8E9A 0 JRNL AUTH E.R.CRAMER,S.A.STARCOVIC,R.M.AVEY,A.I.KAYA,A.R.ROBART JRNL TITL STRUCTURE OF A 10-23 DEOXYRIBOZYME EXHIBITING A HOMODIMER JRNL TITL 2 CONFORMATION. JRNL REF COMMUN CHEM V. 6 119 2023 JRNL REFN ESSN 2399-3669 JRNL PMID 37301907 JRNL DOI 10.1038/S42004-023-00924-3 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 21226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.9200 - 5.1500 1.00 3073 145 0.2214 0.2491 REMARK 3 2 5.1400 - 4.0800 0.99 2980 134 0.2351 0.2741 REMARK 3 3 4.0800 - 3.5700 1.00 2943 154 0.2649 0.2958 REMARK 3 4 3.5700 - 3.2400 1.00 2936 144 0.2579 0.3098 REMARK 3 5 3.2400 - 3.0100 1.00 2917 166 0.3198 0.3564 REMARK 3 6 3.0100 - 2.8300 0.98 2823 160 0.3470 0.3538 REMARK 3 7 2.8300 - 2.6900 0.86 2519 132 0.3749 0.3821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.478 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5179 REMARK 3 ANGLE : 1.159 7395 REMARK 3 CHIRALITY : 0.050 846 REMARK 3 PLANARITY : 0.006 572 REMARK 3 DIHEDRAL : 27.959 2104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000266850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 139.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XM8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 (PH 7.5), AND 25% PEG-3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.41450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.20950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.41450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.20950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG C 18 REMARK 465 DA C 19 REMARK 465 DA C 20 REMARK 465 DA C 21 REMARK 465 DC D 17 REMARK 465 DG D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 174 O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 140 OP1 DG D 4 1.51 REMARK 500 HZ3 LYS B 136 OP1 DT D 3 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE3 MET B 1 HE2 LYS B 132 4756 1.24 REMARK 500 NE2 GLN A 6 OG1 THR A 147 1545 2.13 REMARK 500 OE2 GLU A 44 NZ LYS A 131 4745 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 160 C LYS A 161 N -0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 160 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 A2M C 9 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG C 35 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 43 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 A2M D 9 O3' - P - OP1 ANGL. DEV. = 16.3 DEGREES REMARK 500 DG D 35 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 43 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 117 -74.59 -84.22 REMARK 500 LYS A 133 30.56 -96.43 REMARK 500 ASN A 134 75.82 43.75 REMARK 500 ASN A 138 -159.56 -147.67 REMARK 500 GLU B 93 -112.63 53.76 REMARK 500 THR B 154 -30.44 -138.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 49 OD2 61.9 REMARK 620 3 ASP A 51 OD1 103.1 74.5 REMARK 620 4 ASP A 51 OD2 131.7 136.8 62.7 REMARK 620 5 DC C 52 OP1 123.1 82.4 108.3 104.8 REMARK 620 6 HOH C 202 O 113.8 146.6 134.5 72.8 73.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 62 O REMARK 620 2 GLU A 83 O 105.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 122 OH REMARK 620 2 THR A 166 O 95.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 144 O REMARK 620 2 HOH A 310 O 128.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 39 OG REMARK 620 2 ASP B 49 OD1 99.5 REMARK 620 3 ASP B 51 OD2 106.5 92.6 REMARK 620 4 DC D 52 OP1 174.2 75.2 76.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 83 OE1 REMARK 620 2 GLU B 83 OE2 53.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 84 O REMARK 620 2 HOH B 304 O 116.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 91 OE1 REMARK 620 2 DA C 40 OP1 117.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A2M C 9 O2' REMARK 620 2 DC C 10 OP2 91.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 36 O3' REMARK 620 2 HOH C 205 O 105.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT C 37 O3' REMARK 620 2 DA C 38 OP1 63.5 REMARK 620 3 DA C 38 O5' 63.7 61.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 206 O REMARK 620 2 A2M D 9 O4' 129.9 REMARK 620 3 A2M D 9 O3' 107.1 61.8 REMARK 620 4 HOH D 203 O 107.7 78.1 138.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A2M D 9 O2' REMARK 620 2 DC D 10 O5' 79.2 REMARK 620 3 DC D 10 O4' 121.1 95.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 10 OP2 REMARK 620 2 HOH D 201 O 145.8 REMARK 620 3 HOH D 208 O 95.9 105.5 REMARK 620 N 1 2 DBREF 8E9A A 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8E9A B 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 8E9A C 1 52 PDB 8E9A 8E9A 1 52 DBREF 8E9A D 1 52 PDB 8E9A 8E9A 1 52 SEQADV 8E9A SER A 0 UNP P42494 EXPRESSION TAG SEQADV 8E9A SER B 0 UNP P42494 EXPRESSION TAG SEQRES 1 A 175 SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE VAL ASN SEQRES 2 A 175 HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN GLY GLN SEQRES 3 A 175 LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA VAL GLY SEQRES 4 A 175 SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP VAL ASP SEQRES 5 A 175 LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU LYS HIS SEQRES 6 A 175 VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER PHE SER SEQRES 7 A 175 VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU PHE ILE SEQRES 8 A 175 GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU PHE THR SEQRES 9 A 175 ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE HIS PHE SEQRES 10 A 175 THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG ALA ALA SEQRES 11 A 175 LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR GLY LEU SEQRES 12 A 175 PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE THR THR SEQRES 13 A 175 GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR TYR ARG SEQRES 14 A 175 ILE PRO LYS LYS ARG LEU SEQRES 1 B 175 SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE VAL ASN SEQRES 2 B 175 HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN GLY GLN SEQRES 3 B 175 LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA VAL GLY SEQRES 4 B 175 SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP VAL ASP SEQRES 5 B 175 LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU LYS HIS SEQRES 6 B 175 VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER PHE SER SEQRES 7 B 175 VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU PHE ILE SEQRES 8 B 175 GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU PHE THR SEQRES 9 B 175 ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE HIS PHE SEQRES 10 B 175 THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG ALA ALA SEQRES 11 B 175 LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR GLY LEU SEQRES 12 B 175 PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE THR THR SEQRES 13 B 175 GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR TYR ARG SEQRES 14 B 175 ILE PRO LYS LYS ARG LEU SEQRES 1 C 52 DG DC DT DG DG DG DA DT A2M DC DA DT DT SEQRES 2 C 52 DG DT DG DC DG DA DA DA DG DC DA DC DA SEQRES 3 C 52 DA DT DG DG DG DC DT DA DG DC DT DA DC SEQRES 4 C 52 DA DA DC DG DA DA DT DC DC DC DA DG DC SEQRES 1 D 52 DG DC DT DG DG DG DA DT A2M DC DA DT DT SEQRES 2 D 52 DG DT DG DC DG DA DA DA DG DC DA DC DA SEQRES 3 D 52 DA DT DG DG DG DC DT DA DG DC DT DA DC SEQRES 4 D 52 DA DA DC DG DA DA DT DC DC DC DA DG DC HET A2M C 9 37 HET A2M D 9 37 HET MG A 201 1 HET NA A 202 1 HET NA A 203 1 HET NA A 204 1 HET NA A 205 1 HET NA A 206 1 HET MG B 201 1 HET NA B 202 1 HET NA B 203 1 HET NA B 204 1 HET NA B 205 1 HET MG C 101 1 HET NA C 102 1 HET NA C 103 1 HET MG D 101 1 HET MG D 102 1 HET MG D 103 1 HET NA D 104 1 HETNAM A2M 2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 A2M 2(C11 H16 N5 O7 P) FORMUL 5 MG 6(MG 2+) FORMUL 6 NA 12(NA 1+) FORMUL 23 HOH *32(H2 O) HELIX 1 AA1 LEU A 4 ARG A 15 1 12 HELIX 2 AA2 LEU A 61 LEU A 66 1 6 HELIX 3 AA3 GLU A 108 GLY A 118 1 11 HELIX 4 AA4 PRO A 119 LYS A 133 1 15 HELIX 5 AA5 THR A 155 GLY A 164 1 10 HELIX 6 AA6 LEU B 4 ARG B 15 1 12 HELIX 7 AA7 LEU B 30 LYS B 32 5 3 HELIX 8 AA8 LYS B 59 HIS B 64 5 6 HELIX 9 AA9 GLU B 108 GLY B 118 1 11 HELIX 10 AB1 PRO B 119 LYS B 132 1 14 HELIX 11 AB2 THR B 155 GLY B 164 1 10 HELIX 12 AB3 ILE B 169 ARG B 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 GLN A 25 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 TYR A 22 -1 N TYR A 22 O GLN A 25 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 VAL A 37 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 THR A 96 LEU A 105 1 O PHE A 102 N ILE A 54 SHEET 4 AA3 5 LYS A 85 GLU A 91 -1 N CYS A 86 O LEU A 101 SHEET 5 AA3 5 SER A 75 CYS A 81 -1 N SER A 75 O GLU A 91 SHEET 1 AA4 3 LYS A 136 LEU A 137 0 SHEET 2 AA4 3 LEU A 142 PHE A 143 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 LEU A 148 VAL A 149 -1 O VAL A 149 N LEU A 142 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 GLN B 25 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 TYR B 22 -1 N TYR B 22 O GLN B 25 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 VAL B 37 0 SHEET 2 AA7 5 VAL B 50 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 LYS B 95 LEU B 105 1 O PHE B 102 N ILE B 54 SHEET 4 AA7 5 LYS B 85 TRP B 92 -1 N CYS B 86 O LEU B 101 SHEET 5 AA7 5 SER B 75 CYS B 81 -1 N SER B 75 O GLU B 91 SHEET 1 AA8 2 LYS B 136 LEU B 137 0 SHEET 2 AA8 2 LEU B 142 PHE B 143 -1 O PHE B 143 N LYS B 136 SSBOND 1 CYS A 81 CYS A 86 1555 1555 2.05 LINK O3' DT C 8 P A2M C 9 1555 1555 1.61 LINK O3' A2M C 9 P DC C 10 1555 1555 1.63 LINK O3' DT D 8 P A2M D 9 1555 1555 1.60 LINK O3' A2M D 9 P DC D 10 1555 1555 1.62 LINK OE1 GLU A 21 NA NA B 202 1555 1555 2.46 LINK OD1 ASP A 49 MG MG A 201 1555 1555 2.09 LINK OD2 ASP A 49 MG MG A 201 1555 1555 2.17 LINK OD1 ASP A 51 MG MG A 201 1555 1555 2.17 LINK OD2 ASP A 51 MG MG A 201 1555 1555 2.04 LINK O LEU A 62 NA NA A 204 1555 1555 2.20 LINK O GLU A 83 NA NA A 204 1555 1555 2.42 LINK O THR A 103 NA NA A 203 1555 1555 2.42 LINK OH TYR A 122 NA NA A 206 1555 1555 3.16 LINK O LYS A 144 NA NA A 202 1555 1555 3.05 LINK O THR A 166 NA NA A 206 1555 1555 2.40 LINK MG MG A 201 OP1 DC C 52 1555 1555 1.90 LINK MG MG A 201 O HOH C 202 1555 1555 2.28 LINK NA NA A 202 O HOH A 310 1555 1555 2.73 LINK OG SER B 39 NA NA B 205 1555 1555 2.42 LINK OD1 ASP B 49 NA NA B 205 1555 1555 2.79 LINK OD2 ASP B 51 NA NA B 205 1555 1555 2.46 LINK OE1 GLU B 83 NA NA B 204 1555 1555 2.46 LINK OE2 GLU B 83 NA NA B 204 1555 1555 2.42 LINK O ARG B 84 NA NA B 203 1555 1555 2.62 LINK OE1 GLU B 91 MG MG B 201 1555 1555 2.08 LINK MG MG B 201 OP1 DA C 40 1555 1555 1.94 LINK NA NA B 203 O HOH B 304 1555 1555 2.53 LINK NA NA B 205 OP1 DC D 52 1555 1555 2.34 LINK O2' A2M C 9 MG MG C 101 1555 1555 2.60 LINK OP2 DC C 10 MG MG C 101 1555 1555 2.19 LINK O3' DC C 36 NA NA C 102 1555 1555 2.56 LINK O3' DT C 37 NA NA C 103 1555 1555 2.34 LINK OP1 DA C 38 NA NA C 103 1555 1555 2.39 LINK O5' DA C 38 NA NA C 103 1555 1555 2.45 LINK NA NA C 102 O HOH C 205 1555 1555 2.44 LINK O HOH C 206 MG MG D 101 1545 1555 2.18 LINK O4' A2M D 9 MG MG D 101 1555 1555 2.84 LINK O3' A2M D 9 MG MG D 101 1555 1555 2.61 LINK O2' A2M D 9 MG MG D 103 1555 1555 2.45 LINK OP2 DC D 10 MG MG D 102 1555 1555 2.98 LINK O5' DC D 10 MG MG D 103 1555 1555 1.83 LINK O4' DC D 10 MG MG D 103 1555 1555 2.16 LINK O5' DC D 52 NA NA D 104 1555 1555 2.84 LINK MG MG D 101 O HOH D 203 1555 1555 2.35 LINK MG MG D 102 O HOH D 201 1555 1555 2.21 LINK MG MG D 102 O HOH D 208 1555 1555 2.16 CRYST1 114.829 48.419 139.845 90.00 90.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000