HEADER TRANSFERASE 26-AUG-22 8E9L TITLE CRYSTAL STRUCTURE OF E. COLI ASPARTATE AMINOTRANSFERASE MUTANT VFIT IN TITLE 2 THE LIGAND-FREE FORM AT 278 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPAT,TRANSAMINASE A; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ASPC, B0928, JW0911; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, DESIGNED PROTEIN, MUTANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.CHICA,A.D.ST-JACQUES,J.M.RODRIGUEZ,M.C.THOMPSON REVDAT 4 18-OCT-23 8E9L 1 REMARK REVDAT 3 11-OCT-23 8E9L 1 JRNL REVDAT 2 02-NOV-22 8E9L 1 JRNL REVDAT 1 05-OCT-22 8E9L 0 JRNL AUTH A.D.ST-JACQUES,J.M.RODRIGUEZ,M.G.EASON,S.M.FOSTER,S.T.KHAN, JRNL AUTH 2 A.M.DAMRY,N.K.GOTO,M.C.THOMPSON,R.A.CHICA JRNL TITL COMPUTATIONAL REMODELING OF AN ENZYME CONFORMATIONAL JRNL TITL 2 LANDSCAPE FOR ALTERED SUBSTRATE SELECTIVITY. JRNL REF NAT COMMUN V. 14 6058 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37770431 JRNL DOI 10.1038/S41467-023-41762-0 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 124.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 42143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1124.3800 - 7.1800 1.00 1345 130 0.1394 0.1635 REMARK 3 2 7.1800 - 5.7000 1.00 1276 153 0.1557 0.1530 REMARK 3 3 5.7000 - 4.9800 1.00 1291 137 0.1320 0.1720 REMARK 3 4 4.9800 - 4.5200 1.00 1270 145 0.1123 0.1413 REMARK 3 5 4.5200 - 4.2000 1.00 1288 143 0.1183 0.1668 REMARK 3 6 4.2000 - 3.9500 1.00 1265 139 0.1198 0.1738 REMARK 3 7 3.9500 - 3.7500 1.00 1261 159 0.1312 0.1766 REMARK 3 8 3.7500 - 3.5900 1.00 1272 127 0.1516 0.1811 REMARK 3 9 3.5900 - 3.4500 1.00 1286 130 0.1694 0.2229 REMARK 3 10 3.4500 - 3.3300 1.00 1288 135 0.1753 0.2235 REMARK 3 11 3.3300 - 3.2300 1.00 1254 143 0.1796 0.2411 REMARK 3 12 3.2300 - 3.1400 1.00 1258 148 0.1967 0.2300 REMARK 3 13 3.1300 - 3.0500 1.00 1239 157 0.2058 0.2799 REMARK 3 14 3.0500 - 2.9800 1.00 1267 157 0.2137 0.2529 REMARK 3 15 2.9800 - 2.9100 1.00 1235 160 0.2143 0.2611 REMARK 3 16 2.9100 - 2.8500 1.00 1276 131 0.2360 0.3359 REMARK 3 17 2.8500 - 2.7900 1.00 1263 144 0.2509 0.2844 REMARK 3 18 2.7900 - 2.7400 1.00 1272 138 0.2471 0.2582 REMARK 3 19 2.7400 - 2.6900 1.00 1259 159 0.2475 0.2889 REMARK 3 20 2.6900 - 2.6400 1.00 1239 134 0.2548 0.3495 REMARK 3 21 2.6400 - 2.6000 1.00 1284 138 0.2779 0.2998 REMARK 3 22 2.6000 - 2.5600 1.00 1252 138 0.2650 0.2781 REMARK 3 23 2.5600 - 2.5200 1.00 1262 142 0.2770 0.3158 REMARK 3 24 2.5200 - 2.4900 1.00 1269 135 0.2813 0.3163 REMARK 3 25 2.4900 - 2.4500 1.00 1260 152 0.2812 0.3231 REMARK 3 26 2.4500 - 2.4200 1.00 1240 136 0.2823 0.3073 REMARK 3 27 2.4200 - 2.3900 1.00 1255 129 0.3016 0.3212 REMARK 3 28 2.3900 - 2.3600 1.00 1270 131 0.2994 0.3447 REMARK 3 29 2.3600 - 2.3400 1.00 1295 125 0.3215 0.3574 REMARK 3 30 2.3400 - 2.3100 0.89 1155 102 0.3229 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.334 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6293 REMARK 3 ANGLE : 0.500 8571 REMARK 3 CHIRALITY : 0.039 952 REMARK 3 PLANARITY : 0.003 1136 REMARK 3 DIHEDRAL : 20.773 2227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7985 -7.1411 5.0171 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 0.4468 REMARK 3 T33: 0.4158 T12: -0.0611 REMARK 3 T13: 0.0201 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.5116 L22: 0.6655 REMARK 3 L33: 1.6058 L12: 0.4919 REMARK 3 L13: 2.3088 L23: 0.5927 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: -0.6778 S13: -0.0998 REMARK 3 S21: 0.0429 S22: -0.1617 S23: 0.2774 REMARK 3 S31: 0.3470 S32: -0.2854 S33: 0.0487 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2712 12.8674 18.9702 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.3330 REMARK 3 T33: 0.2179 T12: 0.0290 REMARK 3 T13: -0.0470 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 5.1570 L22: 6.9214 REMARK 3 L33: 3.7922 L12: -2.8597 REMARK 3 L13: -1.3709 L23: 2.5332 REMARK 3 S TENSOR REMARK 3 S11: -0.2578 S12: -0.4342 S13: 0.1723 REMARK 3 S21: 0.5469 S22: 0.2100 S23: -0.3126 REMARK 3 S31: 0.3618 S32: 0.0519 S33: 0.0439 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.1400 19.2614 -4.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.2224 REMARK 3 T33: 0.2680 T12: 0.0107 REMARK 3 T13: -0.0098 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.4665 L22: 1.2591 REMARK 3 L33: 2.6172 L12: -0.3853 REMARK 3 L13: -0.4956 L23: 0.3387 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0099 S13: 0.1293 REMARK 3 S21: -0.0626 S22: 0.0383 S23: -0.1066 REMARK 3 S31: -0.0358 S32: 0.1648 S33: -0.0432 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.8613 -0.5749 3.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.4079 REMARK 3 T33: 0.2700 T12: -0.0042 REMARK 3 T13: -0.0205 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6876 L22: 2.3163 REMARK 3 L33: 1.2348 L12: -1.1818 REMARK 3 L13: 0.0201 L23: -0.4996 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.0258 S13: 0.0468 REMARK 3 S21: -0.2730 S22: 0.0105 S23: 0.0719 REMARK 3 S31: 0.2817 S32: 0.0618 S33: -0.0355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5318 34.8114 4.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.4051 REMARK 3 T33: 0.4126 T12: 0.0185 REMARK 3 T13: 0.0505 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.7250 L22: 1.1581 REMARK 3 L33: 5.0444 L12: -1.2459 REMARK 3 L13: -2.2321 L23: 1.5822 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: 0.1631 S13: -0.0339 REMARK 3 S21: -0.4106 S22: -0.0959 S23: 0.1228 REMARK 3 S31: -0.4184 S32: 0.2535 S33: -0.0575 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0459 9.4056 12.2647 REMARK 3 T TENSOR REMARK 3 T11: 0.3056 T22: 0.2424 REMARK 3 T33: 0.3387 T12: -0.0129 REMARK 3 T13: 0.0642 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.1005 L22: 1.7034 REMARK 3 L33: 1.5362 L12: -0.3674 REMARK 3 L13: -0.1165 L23: 0.6995 REMARK 3 S TENSOR REMARK 3 S11: -0.1601 S12: -0.0261 S13: -0.2806 REMARK 3 S21: 0.1377 S22: -0.0589 S23: 0.3844 REMARK 3 S31: 0.2097 S32: -0.2258 S33: 0.2018 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6392 23.4426 29.7969 REMARK 3 T TENSOR REMARK 3 T11: 0.4463 T22: 0.4716 REMARK 3 T33: 0.3305 T12: 0.0043 REMARK 3 T13: 0.1246 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.2234 L22: 8.3578 REMARK 3 L33: 0.7998 L12: -5.8471 REMARK 3 L13: -0.3111 L23: 0.1705 REMARK 3 S TENSOR REMARK 3 S11: -0.7271 S12: -0.7853 S13: -0.5760 REMARK 3 S21: 0.9897 S22: 0.6949 S23: 0.7530 REMARK 3 S31: 0.2465 S32: 0.0203 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 332 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4564 35.6562 17.5363 REMARK 3 T TENSOR REMARK 3 T11: 0.3474 T22: 0.2995 REMARK 3 T33: 0.2933 T12: 0.0082 REMARK 3 T13: 0.0440 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.1180 L22: 3.8910 REMARK 3 L33: 2.6951 L12: 0.0486 REMARK 3 L13: 0.0423 L23: 0.0671 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.1572 S13: -0.0230 REMARK 3 S21: -0.3152 S22: -0.0222 S23: 0.2587 REMARK 3 S31: 0.0545 S32: -0.0684 S33: 0.0297 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000268072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 278 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 124.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1X28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, MALEATE, PEG 400, AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.78500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.78500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET B -9 REMARK 465 ALA B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 ASN B 167 CG OD1 ND2 REMARK 470 GLN B 170 CG CD OE1 NE2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ARG B 336 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 343 CG CD CE NZ REMARK 470 LYS B 355 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 331 O HOH B 501 2.03 REMARK 500 O1 SO4 A 402 O HOH A 501 2.12 REMARK 500 O HOH A 537 O HOH A 570 2.13 REMARK 500 OE2 GLU B 331 O HOH B 502 2.13 REMARK 500 O HOH B 549 O HOH B 563 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 149 -55.06 -152.83 REMARK 500 ALA A 218 -71.98 -88.25 REMARK 500 LEU A 250 56.91 -105.10 REMARK 500 ARG A 254 72.56 59.06 REMARK 500 SER A 284 -62.09 75.94 REMARK 500 ILE B 13 -62.88 -94.07 REMARK 500 LYS B 121 -3.54 -147.65 REMARK 500 TYR B 149 -52.34 -156.63 REMARK 500 ALA B 218 -65.84 -91.70 REMARK 500 ARG B 219 -44.58 -136.04 REMARK 500 LEU B 250 50.53 -109.77 REMARK 500 ARG B 254 77.88 59.82 REMARK 500 ASN B 282 -78.26 -112.43 REMARK 500 SER B 284 -64.22 73.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 8E9L A 2 396 UNP P00509 AAT_ECOLI 2 396 DBREF 8E9L B 2 396 UNP P00509 AAT_ECOLI 2 396 SEQADV 8E9L MET A -9 UNP P00509 INITIATING METHIONINE SEQADV 8E9L ALA A -8 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -7 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -6 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -5 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -4 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -3 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS A -2 UNP P00509 EXPRESSION TAG SEQADV 8E9L VAL A -1 UNP P00509 EXPRESSION TAG SEQADV 8E9L GLY A 0 UNP P00509 EXPRESSION TAG SEQADV 8E9L THR A 1 UNP P00509 EXPRESSION TAG SEQADV 8E9L PHE A 37 UNP P00509 LYS 37 ENGINEERED MUTATION SEQADV 8E9L ILE A 43 UNP P00509 THR 43 ENGINEERED MUTATION SEQADV 8E9L THR A 64 UNP P00509 ASN 64 ENGINEERED MUTATION SEQADV 8E9L MET B -9 UNP P00509 INITIATING METHIONINE SEQADV 8E9L ALA B -8 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -7 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -6 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -5 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -4 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -3 UNP P00509 EXPRESSION TAG SEQADV 8E9L HIS B -2 UNP P00509 EXPRESSION TAG SEQADV 8E9L VAL B -1 UNP P00509 EXPRESSION TAG SEQADV 8E9L GLY B 0 UNP P00509 EXPRESSION TAG SEQADV 8E9L THR B 1 UNP P00509 EXPRESSION TAG SEQADV 8E9L PHE B 37 UNP P00509 LYS 37 ENGINEERED MUTATION SEQADV 8E9L ILE B 43 UNP P00509 THR 43 ENGINEERED MUTATION SEQADV 8E9L THR B 64 UNP P00509 ASN 64 ENGINEERED MUTATION SEQRES 1 A 406 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR PHE GLU SEQRES 2 A 406 ASN ILE THR ALA ALA PRO ALA ASP PRO ILE LEU GLY LEU SEQRES 3 A 406 ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO GLY LYS ILE SEQRES 4 A 406 ASN LEU GLY ILE GLY VAL TYR PHE ASP GLU THR GLY LYS SEQRES 5 A 406 ILE PRO VAL LEU THR SER VAL LYS LYS ALA GLU GLN TYR SEQRES 6 A 406 LEU LEU GLU ASN GLU THR THR LYS THR TYR LEU GLY ILE SEQRES 7 A 406 ASP GLY ILE PRO GLU PHE GLY ARG CYS THR GLN GLU LEU SEQRES 8 A 406 LEU PHE GLY LYS GLY SER ALA LEU ILE ASN ASP LYS ARG SEQRES 9 A 406 ALA ARG THR ALA GLN THR PRO GLY GLY THR GLY ALA LEU SEQRES 10 A 406 ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN THR SER VAL SEQRES 11 A 406 LYS ARG VAL TRP VAL SER ASN PRO SER TRP PRO ASN HIS SEQRES 12 A 406 LYS SER VAL PHE ASN SER ALA GLY LEU GLU VAL ARG GLU SEQRES 13 A 406 TYR ALA TYR TYR ASP ALA GLU ASN HIS THR LEU ASP PHE SEQRES 14 A 406 ASP ALA LEU ILE ASN SER LEU ASN GLU ALA GLN ALA GLY SEQRES 15 A 406 ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS ASN PRO THR SEQRES 16 A 406 GLY ILE ASP PRO THR LEU GLU GLN TRP GLN THR LEU ALA SEQRES 17 A 406 GLN LEU SER VAL GLU LYS GLY TRP LEU PRO LEU PHE ASP SEQRES 18 A 406 PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU GLU GLU ASP SEQRES 19 A 406 ALA GLU GLY LEU ARG ALA PHE ALA ALA MET HIS LYS GLU SEQRES 20 A 406 LEU ILE VAL ALA SER SER TYR SER LYS ASN PHE GLY LEU SEQRES 21 A 406 TYR ASN GLU ARG VAL GLY ALA CYS THR LEU VAL ALA ALA SEQRES 22 A 406 ASP SER GLU THR VAL ASP ARG ALA PHE SER GLN MET LYS SEQRES 23 A 406 ALA ALA ILE ARG ALA ASN TYR SER ASN PRO PRO ALA HIS SEQRES 24 A 406 GLY ALA SER VAL VAL ALA THR ILE LEU SER ASN ASP ALA SEQRES 25 A 406 LEU ARG ALA ILE TRP GLU GLN GLU LEU THR ASP MET ARG SEQRES 26 A 406 GLN ARG ILE GLN ARG MET ARG GLN LEU PHE VAL ASN THR SEQRES 27 A 406 LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SER PHE ILE SEQRES 28 A 406 ILE LYS GLN ASN GLY MET PHE SER PHE SER GLY LEU THR SEQRES 29 A 406 LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU PHE GLY VAL SEQRES 30 A 406 TYR ALA VAL ALA SER GLY ARG VAL ASN VAL ALA GLY MET SEQRES 31 A 406 THR PRO ASP ASN MET ALA PRO LEU CYS GLU ALA ILE VAL SEQRES 32 A 406 ALA VAL LEU SEQRES 1 B 406 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR PHE GLU SEQRES 2 B 406 ASN ILE THR ALA ALA PRO ALA ASP PRO ILE LEU GLY LEU SEQRES 3 B 406 ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO GLY LYS ILE SEQRES 4 B 406 ASN LEU GLY ILE GLY VAL TYR PHE ASP GLU THR GLY LYS SEQRES 5 B 406 ILE PRO VAL LEU THR SER VAL LYS LYS ALA GLU GLN TYR SEQRES 6 B 406 LEU LEU GLU ASN GLU THR THR LYS THR TYR LEU GLY ILE SEQRES 7 B 406 ASP GLY ILE PRO GLU PHE GLY ARG CYS THR GLN GLU LEU SEQRES 8 B 406 LEU PHE GLY LYS GLY SER ALA LEU ILE ASN ASP LYS ARG SEQRES 9 B 406 ALA ARG THR ALA GLN THR PRO GLY GLY THR GLY ALA LEU SEQRES 10 B 406 ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN THR SER VAL SEQRES 11 B 406 LYS ARG VAL TRP VAL SER ASN PRO SER TRP PRO ASN HIS SEQRES 12 B 406 LYS SER VAL PHE ASN SER ALA GLY LEU GLU VAL ARG GLU SEQRES 13 B 406 TYR ALA TYR TYR ASP ALA GLU ASN HIS THR LEU ASP PHE SEQRES 14 B 406 ASP ALA LEU ILE ASN SER LEU ASN GLU ALA GLN ALA GLY SEQRES 15 B 406 ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS ASN PRO THR SEQRES 16 B 406 GLY ILE ASP PRO THR LEU GLU GLN TRP GLN THR LEU ALA SEQRES 17 B 406 GLN LEU SER VAL GLU LYS GLY TRP LEU PRO LEU PHE ASP SEQRES 18 B 406 PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU GLU GLU ASP SEQRES 19 B 406 ALA GLU GLY LEU ARG ALA PHE ALA ALA MET HIS LYS GLU SEQRES 20 B 406 LEU ILE VAL ALA SER SER TYR SER LYS ASN PHE GLY LEU SEQRES 21 B 406 TYR ASN GLU ARG VAL GLY ALA CYS THR LEU VAL ALA ALA SEQRES 22 B 406 ASP SER GLU THR VAL ASP ARG ALA PHE SER GLN MET LYS SEQRES 23 B 406 ALA ALA ILE ARG ALA ASN TYR SER ASN PRO PRO ALA HIS SEQRES 24 B 406 GLY ALA SER VAL VAL ALA THR ILE LEU SER ASN ASP ALA SEQRES 25 B 406 LEU ARG ALA ILE TRP GLU GLN GLU LEU THR ASP MET ARG SEQRES 26 B 406 GLN ARG ILE GLN ARG MET ARG GLN LEU PHE VAL ASN THR SEQRES 27 B 406 LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SER PHE ILE SEQRES 28 B 406 ILE LYS GLN ASN GLY MET PHE SER PHE SER GLY LEU THR SEQRES 29 B 406 LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU PHE GLY VAL SEQRES 30 B 406 TYR ALA VAL ALA SER GLY ARG VAL ASN VAL ALA GLY MET SEQRES 31 B 406 THR PRO ASP ASN MET ALA PRO LEU CYS GLU ALA ILE VAL SEQRES 32 B 406 ALA VAL LEU HET PLP A 401 24 HET SO4 A 402 5 HET PLP B 401 24 HET SO4 B 402 5 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM SO4 SULFATE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *157(H2 O) HELIX 1 AA1 ILE A 13 ASP A 23 1 11 HELIX 2 AA2 LEU A 46 GLU A 60 1 15 HELIX 3 AA3 ILE A 71 GLY A 84 1 14 HELIX 4 AA4 SER A 87 ASP A 92 1 6 HELIX 5 AA5 GLY A 102 THR A 118 1 17 HELIX 6 AA6 PRO A 131 ALA A 140 1 10 HELIX 7 AA7 ASP A 158 LEU A 166 1 9 HELIX 8 AA8 THR A 190 GLY A 205 1 16 HELIX 9 AA9 GLU A 222 ASP A 224 5 3 HELIX 10 AB1 ALA A 225 ALA A 233 1 9 HELIX 11 AB2 LEU A 250 GLU A 253 5 4 HELIX 12 AB3 ASP A 264 ALA A 281 1 18 HELIX 13 AB4 PRO A 287 SER A 299 1 13 HELIX 14 AB5 ASN A 300 LYS A 332 1 33 HELIX 15 AB6 PHE A 338 ILE A 342 5 5 HELIX 16 AB7 THR A 354 GLY A 366 1 13 HELIX 17 AB8 ALA A 378 MET A 380 5 3 HELIX 18 AB9 ASN A 384 LEU A 396 1 13 HELIX 19 AC1 ILE B 13 ASP B 23 1 11 HELIX 20 AC2 LEU B 46 GLU B 60 1 15 HELIX 21 AC3 ILE B 71 GLY B 84 1 14 HELIX 22 AC4 SER B 87 ASP B 92 1 6 HELIX 23 AC5 PRO B 101 THR B 118 1 18 HELIX 24 AC6 PRO B 131 ALA B 140 1 10 HELIX 25 AC7 ASP B 158 ASN B 167 1 10 HELIX 26 AC8 THR B 190 GLY B 205 1 16 HELIX 27 AC9 GLU B 222 ASP B 224 5 3 HELIX 28 AD1 ALA B 225 ALA B 233 1 9 HELIX 29 AD2 LEU B 250 ARG B 254 5 5 HELIX 30 AD3 ASP B 264 ALA B 281 1 18 HELIX 31 AD4 PRO B 287 ASN B 300 1 14 HELIX 32 AD5 ASN B 300 LYS B 332 1 33 HELIX 33 AD6 PHE B 338 GLN B 344 5 7 HELIX 34 AD7 THR B 354 GLY B 366 1 13 HELIX 35 AD8 ALA B 378 MET B 380 5 3 HELIX 36 AD9 ASN B 384 LEU B 396 1 13 SHEET 1 AA1 2 ILE A 29 ASN A 30 0 SHEET 2 AA1 2 VAL A 367 TYR A 368 1 O TYR A 368 N ILE A 29 SHEET 1 AA2 7 ALA A 95 PRO A 101 0 SHEET 2 AA2 7 VAL A 255 VAL A 261 -1 O LEU A 260 N ARG A 96 SHEET 3 AA2 7 LEU A 238 SER A 243 -1 N SER A 242 O ALA A 257 SHEET 4 AA2 7 LEU A 207 PHE A 212 1 N PHE A 210 O ALA A 241 SHEET 5 AA2 7 VAL A 174 HIS A 178 1 N VAL A 175 O LEU A 209 SHEET 6 AA2 7 ARG A 122 ASN A 127 1 N TRP A 124 O LEU A 176 SHEET 7 AA2 7 GLU A 143 ALA A 148 1 O ARG A 145 N VAL A 125 SHEET 1 AA3 2 TYR A 150 ASP A 151 0 SHEET 2 AA3 2 THR A 156 LEU A 157 -1 O THR A 156 N ASP A 151 SHEET 1 AA4 2 PHE A 348 PHE A 350 0 SHEET 2 AA4 2 ARG A 374 ASN A 376 -1 O VAL A 375 N SER A 349 SHEET 1 AA5 2 ILE B 29 ASN B 30 0 SHEET 2 AA5 2 VAL B 367 TYR B 368 1 O TYR B 368 N ILE B 29 SHEET 1 AA6 7 ALA B 95 THR B 100 0 SHEET 2 AA6 7 GLY B 256 VAL B 261 -1 O LEU B 260 N ARG B 96 SHEET 3 AA6 7 LEU B 238 SER B 243 -1 N SER B 242 O ALA B 257 SHEET 4 AA6 7 LEU B 207 PHE B 212 1 N PRO B 208 O ILE B 239 SHEET 5 AA6 7 VAL B 174 HIS B 178 1 N PHE B 177 O LEU B 209 SHEET 6 AA6 7 ARG B 122 ASN B 127 1 N TRP B 124 O VAL B 174 SHEET 7 AA6 7 GLU B 143 ALA B 148 1 O ARG B 145 N VAL B 123 SHEET 1 AA7 2 TYR B 150 ASP B 151 0 SHEET 2 AA7 2 THR B 156 LEU B 157 -1 O THR B 156 N ASP B 151 SHEET 1 AA8 2 PHE B 348 PHE B 350 0 SHEET 2 AA8 2 ARG B 374 ASN B 376 -1 O VAL B 375 N SER B 349 CISPEP 1 ASN A 127 PRO A 128 0 3.79 CISPEP 2 ASN A 183 PRO A 184 0 7.76 CISPEP 3 ASN B 127 PRO B 128 0 0.59 CISPEP 4 ASN B 183 PRO B 184 0 3.28 CRYST1 143.830 143.830 81.570 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006953 0.004014 0.000000 0.00000 SCALE2 0.000000 0.008028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012259 0.00000