HEADER IMMUNOSUPPRESSANT/INHIBITOR 28-AUG-22 8EA7 TITLE NKG2D COMPLEXED WITH INHIBITOR 3G COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1,NK COMPND 5 CELL RECEPTOR D,NKG2-D-ACTIVATING NK RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLRK1, D12S2489E, NKG2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NKG2D, IMMUNE SYSTEM, IMMUNOSUPPRESSANT, IMMUNOSUPPRESSANT-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.THOMPSON,J.C.GRANT,N.K.KARPOWICH,S.SHARMA REVDAT 2 10-MAY-23 8EA7 1 JRNL REVDAT 1 03-MAY-23 8EA7 0 JRNL AUTH A.A.THOMPSON,M.B.HARBUT,P.P.KUNG,N.K.KARPOWICH,J.D.BRANSON, JRNL AUTH 2 J.C.GRANT,D.HAGAN,H.A.PASCUAL,G.BAI,R.B.ZAVAREH,H.R.COATE, JRNL AUTH 3 B.C.COLLINS,M.COTE,C.F.GELIN,K.L.DAMM-GANAMET,H.GHOLAMI, JRNL AUTH 4 A.R.HUFF,L.LIMON,K.J.LUMB,P.A.MAK,K.M.NAKAFUKU,E.V.PRICE, JRNL AUTH 5 A.Y.SHIH,M.TOOTOONCHI,N.A.VELLORE,J.WANG,N.WEI,J.ZIFF, JRNL AUTH 6 S.B.BERGER,J.P.EDWARDS,A.GARDET,S.SUN,J.E.TOWNE,J.D.VENABLE, JRNL AUTH 7 Z.SHI,H.VENKATESAN,M.L.RIVES,S.SHARMA,B.T.SHIREMAN,S.J.ALLEN JRNL TITL IDENTIFICATION OF SMALL-MOLECULE PROTEIN-PROTEIN INTERACTION JRNL TITL 2 INHIBITORS FOR NKG2D. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 42120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37098070 JRNL DOI 10.1073/PNAS.2216342120 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 61397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3500 - 3.5300 1.00 3343 190 0.1669 0.1764 REMARK 3 2 3.5300 - 2.8000 1.00 3272 175 0.1922 0.2302 REMARK 3 3 2.8000 - 2.4500 1.00 3242 186 0.1949 0.2329 REMARK 3 4 2.4500 - 2.2200 1.00 3247 185 0.1928 0.2104 REMARK 3 5 2.2200 - 2.0600 1.00 3244 145 0.1914 0.2190 REMARK 3 6 2.0600 - 1.9400 1.00 3255 156 0.1949 0.2109 REMARK 3 7 1.9400 - 1.8400 1.00 3290 132 0.1989 0.2161 REMARK 3 8 1.8400 - 1.7600 1.00 3220 159 0.2000 0.2411 REMARK 3 9 1.7600 - 1.7000 1.00 3225 168 0.2077 0.2224 REMARK 3 10 1.7000 - 1.6400 1.00 3198 184 0.2013 0.2013 REMARK 3 11 1.6400 - 1.5900 1.00 3245 169 0.2045 0.2277 REMARK 3 12 1.5900 - 1.5400 1.00 3199 151 0.2117 0.2519 REMARK 3 13 1.5400 - 1.5000 0.99 3221 161 0.2227 0.2273 REMARK 3 14 1.5000 - 1.4600 0.97 3124 162 0.2325 0.2516 REMARK 3 15 1.4600 - 1.4300 0.88 2815 139 0.2582 0.2827 REMARK 3 16 1.4300 - 1.4000 0.78 2523 127 0.2513 0.2728 REMARK 3 17 1.4000 - 1.3700 0.69 2206 116 0.2681 0.3278 REMARK 3 18 1.3700 - 1.3500 0.57 1841 99 0.2794 0.2566 REMARK 3 19 1.3500 - 1.3200 0.47 1510 74 0.3101 0.2991 REMARK 3 20 1.3200 - 1.3000 0.39 1228 67 0.3207 0.3450 REMARK 3 21 1.3000 - 1.2800 0.30 956 48 0.3323 0.2904 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2071 REMARK 3 ANGLE : 0.851 2810 REMARK 3 CHIRALITY : 0.086 274 REMARK 3 PLANARITY : 0.005 366 REMARK 3 DIHEDRAL : 7.072 274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4996 -7.4454 8.2281 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.2183 REMARK 3 T33: 0.2686 T12: 0.0238 REMARK 3 T13: -0.0663 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 5.6950 L22: 2.6654 REMARK 3 L33: 0.6973 L12: 3.1107 REMARK 3 L13: -0.6452 L23: -1.0137 REMARK 3 S TENSOR REMARK 3 S11: -0.3332 S12: 0.0586 S13: 0.6526 REMARK 3 S21: -0.4865 S22: -0.0549 S23: 0.2049 REMARK 3 S31: -0.5134 S32: 0.2654 S33: 0.0983 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4394 -14.9524 12.0631 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.1426 REMARK 3 T33: 0.1293 T12: 0.0277 REMARK 3 T13: -0.0158 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 5.4358 L22: 4.1985 REMARK 3 L33: 7.4936 L12: 2.1535 REMARK 3 L13: -2.7052 L23: -2.0897 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: -0.0796 S13: 0.1125 REMARK 3 S21: -0.0231 S22: 0.0064 S23: 0.1707 REMARK 3 S31: -0.3115 S32: -0.1569 S33: 0.0991 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5148 -21.7531 21.0951 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.2613 REMARK 3 T33: 0.1958 T12: 0.0304 REMARK 3 T13: 0.0348 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 6.9254 L22: 6.8877 REMARK 3 L33: 6.6560 L12: 0.5220 REMARK 3 L13: -0.1875 L23: -2.7727 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.3246 S13: 0.1168 REMARK 3 S21: 0.3980 S22: -0.0434 S23: 0.4913 REMARK 3 S31: -0.3913 S32: -0.6535 S33: 0.0840 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9504 -22.7291 7.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.1380 REMARK 3 T33: 0.1089 T12: -0.0092 REMARK 3 T13: -0.0027 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 6.5451 L22: 4.5183 REMARK 3 L33: 6.3001 L12: 2.0274 REMARK 3 L13: -1.8945 L23: -0.1250 REMARK 3 S TENSOR REMARK 3 S11: -0.2828 S12: 0.5030 S13: -0.3126 REMARK 3 S21: -0.4531 S22: 0.1345 S23: -0.2104 REMARK 3 S31: 0.0191 S32: -0.1496 S33: 0.1006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2352 -23.6228 17.5479 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.1430 REMARK 3 T33: 0.1656 T12: 0.0041 REMARK 3 T13: -0.0035 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 8.1412 L22: 6.3132 REMARK 3 L33: 5.4336 L12: 3.3442 REMARK 3 L13: -3.2396 L23: -2.3613 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: -0.3354 S13: -0.2484 REMARK 3 S21: -0.2008 S22: -0.1389 S23: -0.4443 REMARK 3 S31: 0.1230 S32: 0.5203 S33: 0.0268 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9821 -31.4727 11.0729 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.2494 REMARK 3 T33: 0.2963 T12: -0.0599 REMARK 3 T13: -0.0670 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 4.0034 L22: 5.5380 REMARK 3 L33: 4.3279 L12: 1.8304 REMARK 3 L13: 0.0910 L23: 3.0620 REMARK 3 S TENSOR REMARK 3 S11: -0.3393 S12: 0.4059 S13: -0.4148 REMARK 3 S21: -0.8521 S22: -0.0019 S23: 0.6833 REMARK 3 S31: 0.1076 S32: -0.4952 S33: 0.1670 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0669 -34.7541 8.9554 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.1763 REMARK 3 T33: 0.2460 T12: 0.0193 REMARK 3 T13: 0.0474 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 6.3337 L22: 5.3998 REMARK 3 L33: 6.4490 L12: 0.5871 REMARK 3 L13: 0.8197 L23: -1.9379 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.7583 S13: -0.5384 REMARK 3 S21: -1.0204 S22: 0.0181 S23: -0.4186 REMARK 3 S31: 0.2021 S32: 0.5242 S33: 0.0301 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7817 -39.5359 22.3789 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.2814 REMARK 3 T33: 0.3619 T12: -0.0288 REMARK 3 T13: -0.0764 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.6713 L22: 1.6628 REMARK 3 L33: 4.0273 L12: 0.2078 REMARK 3 L13: -1.6527 L23: -0.3338 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.9337 S13: -0.5228 REMARK 3 S21: 0.3618 S22: 0.2943 S23: 0.3082 REMARK 3 S31: 0.7002 S32: -0.2034 S33: -0.1273 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8966 -30.9869 20.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1354 REMARK 3 T33: 0.1777 T12: -0.0235 REMARK 3 T13: -0.0098 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.2967 L22: 5.7298 REMARK 3 L33: 4.9793 L12: -0.7450 REMARK 3 L13: -1.3957 L23: 0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.2513 S13: -0.2874 REMARK 3 S21: 0.0337 S22: 0.0134 S23: -0.0098 REMARK 3 S31: 0.2001 S32: -0.0978 S33: 0.0562 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0009 -17.7960 10.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.2310 REMARK 3 T33: 0.1487 T12: 0.0475 REMARK 3 T13: -0.0018 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.4440 L22: 5.1979 REMARK 3 L33: 2.2267 L12: 0.4262 REMARK 3 L13: -0.6063 L23: -3.3780 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: 0.6188 S13: 0.1422 REMARK 3 S21: -0.6877 S22: -0.0105 S23: -0.0160 REMARK 3 S31: -0.0839 S32: 0.0013 S33: -0.1900 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1346 -9.3267 13.2309 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.2691 REMARK 3 T33: 0.1538 T12: -0.0509 REMARK 3 T13: 0.0554 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 5.0539 L22: 1.0010 REMARK 3 L33: 3.6873 L12: 1.6052 REMARK 3 L13: 4.2259 L23: 1.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.6918 S13: -0.2449 REMARK 3 S21: -0.2437 S22: 0.2202 S23: -0.1563 REMARK 3 S31: -0.2109 S32: 0.5479 S33: -0.1168 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0825 -3.3629 24.3893 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.1006 REMARK 3 T33: 0.1409 T12: -0.0238 REMARK 3 T13: -0.0326 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 5.6993 L22: 2.5310 REMARK 3 L33: 3.5682 L12: -0.7692 REMARK 3 L13: 0.9530 L23: 0.4579 REMARK 3 S TENSOR REMARK 3 S11: -0.3768 S12: -0.0555 S13: 0.4693 REMARK 3 S21: 0.0529 S22: 0.1292 S23: -0.1516 REMARK 3 S31: -0.6222 S32: 0.0577 S33: 0.1450 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7191 -8.7975 27.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1385 REMARK 3 T33: 0.1847 T12: -0.0144 REMARK 3 T13: 0.0094 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 5.6478 L22: 1.9271 REMARK 3 L33: 3.5039 L12: -0.3625 REMARK 3 L13: 0.6357 L23: 0.9793 REMARK 3 S TENSOR REMARK 3 S11: -0.1788 S12: -0.3006 S13: -0.3306 REMARK 3 S21: 0.0429 S22: 0.1445 S23: -0.1773 REMARK 3 S31: -0.2157 S32: 0.2453 S33: 0.0170 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 39.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 - 0.22 M NANO3 20 - 31 % (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.29100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.29100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 LEU A 91 REMARK 465 THR A 92 REMARK 465 ILE A 160 REMARK 465 PRO A 161 REMARK 465 THR A 162 REMARK 465 ASN A 163 REMARK 465 GLY A 164 REMARK 465 MET B 88 REMARK 465 GLY B 89 REMARK 465 PRO B 90 REMARK 465 LEU B 91 REMARK 465 THR B 92 REMARK 465 GLU B 93 REMARK 465 PRO B 161 REMARK 465 THR B 162 REMARK 465 ASN B 163 REMARK 465 THR B 215 REMARK 465 VAL B 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 SER B 175 OG REMARK 470 GLN B 185 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 151 -159.66 65.90 REMARK 500 MET A 184 -63.01 -148.53 REMARK 500 SER B 151 -172.01 68.85 REMARK 500 SER B 151 -170.70 68.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 8EA7 A 90 216 UNP P26718 NKG2D_HUMAN 90 216 DBREF 8EA7 B 90 216 UNP P26718 NKG2D_HUMAN 90 216 SEQADV 8EA7 MET A 88 UNP P26718 INITIATING METHIONINE SEQADV 8EA7 GLY A 89 UNP P26718 EXPRESSION TAG SEQADV 8EA7 GLU A 117 UNP P26718 SER 117 ENGINEERED MUTATION SEQADV 8EA7 SER A 173 UNP P26718 ILE 173 ENGINEERED MUTATION SEQADV 8EA7 MET B 88 UNP P26718 INITIATING METHIONINE SEQADV 8EA7 GLY B 89 UNP P26718 EXPRESSION TAG SEQADV 8EA7 GLU B 117 UNP P26718 SER 117 ENGINEERED MUTATION SEQADV 8EA7 SER B 173 UNP P26718 ILE 173 ENGINEERED MUTATION SEQRES 1 A 129 MET GLY PRO LEU THR GLU SER TYR CYS GLY PRO CYS PRO SEQRES 2 A 129 LYS ASN TRP ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE SEQRES 3 A 129 PHE ASP GLU GLU LYS ASN TRP TYR GLU SER GLN ALA SER SEQRES 4 A 129 CYS MET SER GLN ASN ALA SER LEU LEU LYS VAL TYR SER SEQRES 5 A 129 LYS GLU ASP GLN ASP LEU LEU LYS LEU VAL LYS SER TYR SEQRES 6 A 129 HIS TRP MET GLY LEU VAL HIS ILE PRO THR ASN GLY SER SEQRES 7 A 129 TRP GLN TRP GLU ASP GLY SER SER LEU SER PRO ASN LEU SEQRES 8 A 129 LEU THR ILE ILE GLU MET GLN LYS GLY ASP CYS ALA LEU SEQRES 9 A 129 TYR ALA SER SER PHE LYS GLY TYR ILE GLU ASN CYS SER SEQRES 10 A 129 THR PRO ASN THR TYR ILE CYS MET GLN ARG THR VAL SEQRES 1 B 129 MET GLY PRO LEU THR GLU SER TYR CYS GLY PRO CYS PRO SEQRES 2 B 129 LYS ASN TRP ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE SEQRES 3 B 129 PHE ASP GLU GLU LYS ASN TRP TYR GLU SER GLN ALA SER SEQRES 4 B 129 CYS MET SER GLN ASN ALA SER LEU LEU LYS VAL TYR SER SEQRES 5 B 129 LYS GLU ASP GLN ASP LEU LEU LYS LEU VAL LYS SER TYR SEQRES 6 B 129 HIS TRP MET GLY LEU VAL HIS ILE PRO THR ASN GLY SER SEQRES 7 B 129 TRP GLN TRP GLU ASP GLY SER SER LEU SER PRO ASN LEU SEQRES 8 B 129 LEU THR ILE ILE GLU MET GLN LYS GLY ASP CYS ALA LEU SEQRES 9 B 129 TYR ALA SER SER PHE LYS GLY TYR ILE GLU ASN CYS SER SEQRES 10 B 129 THR PRO ASN THR TYR ILE CYS MET GLN ARG THR VAL HET PEG A 301 7 HET VMH A 302 48 HET PEG B 301 7 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM VMH (4M)-N-{(1S)-2-(DIMETHYLAMINO)-2-OXO-1-[3- HETNAM 2 VMH (TRIFLUOROMETHYL)PHENYL]ETHYL}-4-(1-METHYL-1H-PYRAZOL- HETNAM 3 VMH 5-YL)-4'-(TRIFLUOROMETHYL)[1,1'-BIPHENYL]-2- HETNAM 4 VMH CARBOXAMIDE FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 VMH C29 H24 F6 N4 O2 FORMUL 6 HOH *145(H2 O) HELIX 1 AA1 ASN A 119 GLN A 130 1 12 HELIX 2 AA2 GLN A 143 VAL A 149 5 7 HELIX 3 AA3 ASN B 119 GLN B 130 1 12 HELIX 4 AA4 GLN B 143 VAL B 149 5 7 SHEET 1 AA1 2 SER A 94 CYS A 96 0 SHEET 2 AA1 2 CYS B 96 CYS B 99 -1 O CYS B 99 N SER A 94 SHEET 1 AA2 4 ILE A 104 TYR A 106 0 SHEET 2 AA2 4 ASN A 109 LYS A 118 -1 O TYR A 111 N ILE A 104 SHEET 3 AA2 4 ASN A 207 ARG A 214 -1 O GLN A 213 N CYS A 110 SHEET 4 AA2 4 SER A 133 LEU A 134 -1 N SER A 133 O MET A 212 SHEET 1 AA3 5 GLN A 167 TRP A 168 0 SHEET 2 AA3 5 HIS A 153 VAL A 158 -1 N VAL A 158 O GLN A 167 SHEET 3 AA3 5 CYS A 189 ALA A 193 -1 O TYR A 192 N HIS A 153 SHEET 4 AA3 5 LYS A 197 GLU A 201 -1 O GLU A 201 N CYS A 189 SHEET 5 AA3 5 THR A 180 ILE A 182 1 N ILE A 182 O GLY A 198 SHEET 1 AA4 4 ILE B 104 TYR B 106 0 SHEET 2 AA4 4 ASN B 109 LYS B 118 -1 O TYR B 111 N ILE B 104 SHEET 3 AA4 4 ASN B 207 GLN B 213 -1 O GLN B 213 N CYS B 110 SHEET 4 AA4 4 SER B 133 LEU B 134 -1 N SER B 133 O MET B 212 SHEET 1 AA5 5 TRP B 166 TRP B 168 0 SHEET 2 AA5 5 HIS B 153 HIS B 159 -1 N VAL B 158 O GLN B 167 SHEET 3 AA5 5 CYS B 189 ALA B 193 -1 O TYR B 192 N HIS B 153 SHEET 4 AA5 5 LYS B 197 GLU B 201 -1 O TYR B 199 N LEU B 191 SHEET 5 AA5 5 THR B 180 GLU B 183 1 N ILE B 182 O GLY B 198 SSBOND 1 CYS A 96 CYS A 105 1555 1555 2.05 SSBOND 2 CYS A 99 CYS A 110 1555 1555 2.02 SSBOND 3 CYS A 127 CYS A 211 1555 1555 2.03 SSBOND 4 CYS A 189 CYS A 203 1555 1555 2.03 SSBOND 5 CYS B 96 CYS B 105 1555 1555 2.05 SSBOND 6 CYS B 99 CYS B 110 1555 1555 2.04 SSBOND 7 CYS B 127 CYS B 211 1555 1555 2.04 SSBOND 8 CYS B 189 CYS B 203 1555 1555 2.03 CISPEP 1 GLY A 97 PRO A 98 0 0.02 CISPEP 2 SER A 194 SER A 195 0 -0.56 CISPEP 3 GLY B 97 PRO B 98 0 3.14 CISPEP 4 SER B 194 SER B 195 0 2.46 CRYST1 100.582 43.138 67.545 90.00 107.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009942 0.000000 0.003119 0.00000 SCALE2 0.000000 0.023181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015517 0.00000