HEADER LIGASE 31-AUG-22 8EBL TITLE STRUCTURE OF KLHDC2 SUBSTRATE BINDING DOMAIN BOUND TO C-DEGRON FROM TITLE 2 EPHB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 33,HOST CELL COMPND 5 FACTOR HOMOLOG LCP,HOST CELL FACTOR-LIKE PROTEIN 1,HCLP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLU-ASP-SER-HIS-LYS-GLU-SER-ASN-ASP-CYS-SER-CYS-GLY-GLY; COMPND 9 CHAIN: D, C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLHDC2, HCA33; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS E3 LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.SCOTT,B.A.SCHULMAN REVDAT 3 25-OCT-23 8EBL 1 REMARK REVDAT 2 13-SEP-23 8EBL 1 JRNL REVDAT 1 22-FEB-23 8EBL 0 JRNL AUTH D.C.SCOTT,M.T.KING,K.BAEK,C.T.GEE,R.KALATHUR,J.LI,N.PURSER, JRNL AUTH 2 A.NOURSE,S.C.CHAI,S.VAITHIYALINGAM,T.CHEN,R.E.LEE, JRNL AUTH 3 S.J.ELLEDGE,G.KLEIGER,B.A.SCHULMAN JRNL TITL E3 LIGASE AUTOINHIBITION BY C-DEGRON MIMICRY MAINTAINS JRNL TITL 2 C-DEGRON SUBSTRATE FIDELITY. JRNL REF MOL.CELL V. 83 770 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 36805027 JRNL DOI 10.1016/J.MOLCEL.2023.01.019 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 148627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 7560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4400 - 4.2600 0.99 4963 310 0.1528 0.1754 REMARK 3 2 4.2600 - 3.3800 0.96 4805 234 0.1441 0.1714 REMARK 3 3 3.3800 - 2.9500 0.98 4875 220 0.1553 0.1828 REMARK 3 4 2.9500 - 2.6800 0.98 4903 255 0.1624 0.1869 REMARK 3 5 2.6800 - 2.4900 0.98 4887 212 0.1498 0.1777 REMARK 3 6 2.4900 - 2.3500 0.98 4791 284 0.1458 0.1691 REMARK 3 7 2.3500 - 2.2300 0.98 4832 268 0.1420 0.1639 REMARK 3 8 2.2300 - 2.1300 0.97 4796 234 0.1434 0.1831 REMARK 3 9 2.1300 - 2.0500 0.93 4605 220 0.1435 0.1722 REMARK 3 10 2.0500 - 1.9800 0.96 4694 250 0.1361 0.1715 REMARK 3 11 1.9800 - 1.9200 0.96 4762 247 0.1302 0.1586 REMARK 3 12 1.9200 - 1.8600 0.97 4811 260 0.1375 0.1827 REMARK 3 13 1.8600 - 1.8100 0.97 4669 290 0.1473 0.1876 REMARK 3 14 1.8100 - 1.7700 0.96 4713 264 0.1378 0.1761 REMARK 3 15 1.7700 - 1.7300 0.96 4747 252 0.1324 0.1623 REMARK 3 16 1.7300 - 1.6900 0.96 4697 242 0.1302 0.1819 REMARK 3 17 1.6900 - 1.6600 0.96 4733 242 0.1309 0.1586 REMARK 3 18 1.6600 - 1.6300 0.95 4651 281 0.1362 0.2023 REMARK 3 19 1.6300 - 1.6000 0.95 4660 247 0.1369 0.1710 REMARK 3 20 1.6000 - 1.5700 0.95 4690 251 0.1344 0.1733 REMARK 3 21 1.5700 - 1.5400 0.94 4608 260 0.1426 0.1773 REMARK 3 22 1.5400 - 1.5200 0.90 4438 252 0.1592 0.2181 REMARK 3 23 1.5200 - 1.5000 0.94 4587 226 0.1643 0.2203 REMARK 3 24 1.5000 - 1.4800 0.94 4635 270 0.1763 0.2271 REMARK 3 25 1.4800 - 1.4600 0.94 4567 291 0.1721 0.2128 REMARK 3 26 1.4600 - 1.4400 0.94 4670 256 0.1768 0.2094 REMARK 3 27 1.4400 - 1.4200 0.94 4516 266 0.1809 0.2088 REMARK 3 28 1.4200 - 1.4000 0.93 4594 229 0.1918 0.2065 REMARK 3 29 1.4000 - 1.3900 0.93 4641 231 0.1879 0.2329 REMARK 3 30 1.3900 - 1.3700 0.93 4527 216 0.2262 0.2753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 149088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DO2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG3350, 0.2M NASCN, 0.1 M BIS REMARK 280 -TRIS PROPANE, PH = 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.24100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 GLN A 360 REMARK 465 PRO A 361 REMARK 465 GLY B 13 REMARK 465 SER B 14 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 PHE B 18 REMARK 465 GLU B 19 REMARK 465 SER B 20 REMARK 465 TYR B 21 REMARK 465 GLU B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 GLU B 25 REMARK 465 LEU B 26 REMARK 465 GLN B 360 REMARK 465 PRO B 361 REMARK 465 GLU D 1042 REMARK 465 ASP D 1043 REMARK 465 SER D 1044 REMARK 465 HIS D 1045 REMARK 465 LYS D 1046 REMARK 465 GLU D 1047 REMARK 465 SER D 1048 REMARK 465 GLU C 1042 REMARK 465 ASP C 1043 REMARK 465 SER C 1044 REMARK 465 HIS C 1045 REMARK 465 LYS C 1046 REMARK 465 GLU C 1047 REMARK 465 SER C 1048 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 MET A 120 CG SD CE REMARK 470 THR A 126 OG1 CG2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 ASN A 155 CG OD1 ND2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 GLN A 292 CG CD OE1 NE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 MET B 120 CG SD CE REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 155 CG OD1 ND2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 LYS B 304 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D1051 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 84 -167.26 -126.17 REMARK 500 LEU A 148 -159.26 -124.80 REMARK 500 ARG A 238 -124.59 54.56 REMARK 500 ARG A 238 -125.10 55.25 REMARK 500 LYS A 291 33.79 72.08 REMARK 500 GLU B 84 -165.98 -129.01 REMARK 500 LEU B 148 -158.89 -123.92 REMARK 500 ARG B 238 -125.20 54.92 REMARK 500 LYS B 291 33.23 71.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 684 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.07 ANGSTROMS DBREF 8EBL A 15 361 UNP Q9Y2U9 KLDC2_HUMAN 15 361 DBREF 8EBL B 15 361 UNP Q9Y2U9 KLDC2_HUMAN 15 361 DBREF 8EBL D 1042 1055 PDB 8EBL 8EBL 1042 1055 DBREF 8EBL C 1042 1055 PDB 8EBL 8EBL 1042 1055 SEQADV 8EBL GLY A 13 UNP Q9Y2U9 EXPRESSION TAG SEQADV 8EBL SER A 14 UNP Q9Y2U9 EXPRESSION TAG SEQADV 8EBL GLY B 13 UNP Q9Y2U9 EXPRESSION TAG SEQADV 8EBL SER B 14 UNP Q9Y2U9 EXPRESSION TAG SEQRES 1 A 349 GLY SER GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU SEQRES 2 A 349 LEU ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SEQRES 3 A 349 SER ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SEQRES 4 A 349 SER ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO SEQRES 5 A 349 ARG GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG SEQRES 6 A 349 TRP LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER SEQRES 7 A 349 MET SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU SEQRES 8 A 349 TYR LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN SEQRES 9 A 349 LYS PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL SEQRES 10 A 349 LEU GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SEQRES 11 A 349 SER SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN SEQRES 12 A 349 LYS LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU SEQRES 13 A 349 ASP LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER SEQRES 14 A 349 PHE TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS SEQRES 15 A 349 VAL HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN SEQRES 16 A 349 PRO ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA SEQRES 17 A 349 HIS ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE SEQRES 18 A 349 GLY GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS SEQRES 19 A 349 TYR LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE SEQRES 20 A 349 PRO GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER SEQRES 21 A 349 LEU THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY SEQRES 22 A 349 GLY PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP SEQRES 23 A 349 THR TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN SEQRES 24 A 349 HIS PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA SEQRES 25 A 349 CYS ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY SEQRES 26 A 349 CYS ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SEQRES 27 A 349 SER ASN GLU ILE LEU ILE PHE SER VAL GLN PRO SEQRES 1 B 349 GLY SER GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU SEQRES 2 B 349 LEU ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SEQRES 3 B 349 SER ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SEQRES 4 B 349 SER ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO SEQRES 5 B 349 ARG GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG SEQRES 6 B 349 TRP LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER SEQRES 7 B 349 MET SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU SEQRES 8 B 349 TYR LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN SEQRES 9 B 349 LYS PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL SEQRES 10 B 349 LEU GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SEQRES 11 B 349 SER SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN SEQRES 12 B 349 LYS LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU SEQRES 13 B 349 ASP LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER SEQRES 14 B 349 PHE TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS SEQRES 15 B 349 VAL HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN SEQRES 16 B 349 PRO ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA SEQRES 17 B 349 HIS ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE SEQRES 18 B 349 GLY GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS SEQRES 19 B 349 TYR LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE SEQRES 20 B 349 PRO GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER SEQRES 21 B 349 LEU THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY SEQRES 22 B 349 GLY PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP SEQRES 23 B 349 THR TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN SEQRES 24 B 349 HIS PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA SEQRES 25 B 349 CYS ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY SEQRES 26 B 349 CYS ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SEQRES 27 B 349 SER ASN GLU ILE LEU ILE PHE SER VAL GLN PRO SEQRES 1 D 14 GLU ASP SER HIS LYS GLU SER ASN ASP CYS SER CYS GLY SEQRES 2 D 14 GLY SEQRES 1 C 14 GLU ASP SER HIS LYS GLU SER ASN ASP CYS SER CYS GLY SEQRES 2 C 14 GLY FORMUL 5 HOH *587(H2 O) HELIX 1 AA1 THR A 180 SER A 185 1 6 HELIX 2 AA2 VAL A 344 ALA A 348 5 5 HELIX 3 AA3 THR B 180 SER B 185 1 6 HELIX 4 AA4 VAL B 344 ALA B 348 5 5 HELIX 5 AA5 ASN D 1049 CYS D 1053 5 5 HELIX 6 AA6 ASN C 1049 CYS C 1053 5 5 SHEET 1 AA1 4 VAL A 36 SER A 39 0 SHEET 2 AA1 4 HIS A 43 TRP A 47 -1 O PHE A 45 N VAL A 38 SHEET 3 AA1 4 GLU A 67 ASN A 72 -1 O TRP A 69 N VAL A 46 SHEET 4 AA1 4 TRP A 78 ASN A 82 -1 O LYS A 79 N ILE A 70 SHEET 1 AA2 2 TYR A 50 ASN A 53 0 SHEET 2 AA2 2 LEU A 58 TYR A 62 -1 O LEU A 58 N ASN A 53 SHEET 1 AA3 5 GLU A 84 GLY A 85 0 SHEET 2 AA3 5 GLN A 131 ILE A 135 1 O TRP A 132 N GLU A 84 SHEET 3 AA3 5 PHE A 118 ASP A 122 -1 N PHE A 118 O ILE A 135 SHEET 4 AA3 5 VAL A 102 PHE A 106 -1 N LEU A 103 O LEU A 121 SHEET 5 AA3 5 CYS A 95 VAL A 99 -1 N CYS A 95 O PHE A 106 SHEET 1 AA4 2 HIS A 109 HIS A 110 0 SHEET 2 AA4 2 GLY A 113 ASN A 114 -1 O GLY A 113 N HIS A 110 SHEET 1 AA5 4 LYS A 145 ASP A 146 0 SHEET 2 AA5 4 TYR A 163 GLY A 164 -1 O TYR A 163 N ASP A 146 SHEET 3 AA5 4 GLY A 190 ASN A 192 -1 O GLY A 190 N GLY A 164 SHEET 4 AA5 4 PHE A 175 PHE A 177 -1 N GLU A 176 O TRP A 191 SHEET 1 AA6 4 GLY A 149 TYR A 153 0 SHEET 2 AA6 4 LYS A 156 PHE A 160 -1 O ILE A 158 N TRP A 151 SHEET 3 AA6 4 VAL A 195 ASP A 199 -1 O LEU A 198 N LEU A 157 SHEET 4 AA6 4 THR A 204 SER A 206 -1 O SER A 206 N ILE A 197 SHEET 1 AA7 4 ALA A 222 VAL A 226 0 SHEET 2 AA7 4 ARG A 229 TYR A 237 -1 O PHE A 231 N ALA A 224 SHEET 3 AA7 4 ALA A 240 ASN A 249 -1 O MET A 242 N GLY A 235 SHEET 4 AA7 4 TRP A 255 LEU A 258 -1 O LEU A 258 N LEU A 245 SHEET 1 AA8 4 SER A 272 SER A 277 0 SHEET 2 AA8 4 HIS A 280 PHE A 284 -1 O PHE A 282 N THR A 274 SHEET 3 AA8 4 ALA A 297 CYS A 301 -1 O TRP A 298 N LEU A 283 SHEET 4 AA8 4 GLU A 306 PHE A 310 -1 O ILE A 308 N THR A 299 SHEET 1 AA9 3 THR A 323 ALA A 326 0 SHEET 2 AA9 3 GLU A 331 PHE A 335 -1 O ILE A 333 N CYS A 325 SHEET 3 AA9 3 ILE A 354 SER A 358 -1 O LEU A 355 N VAL A 334 SHEET 1 AB1 4 VAL B 36 SER B 39 0 SHEET 2 AB1 4 HIS B 43 TRP B 47 -1 O PHE B 45 N VAL B 38 SHEET 3 AB1 4 GLU B 67 ASN B 72 -1 O TRP B 69 N VAL B 46 SHEET 4 AB1 4 TRP B 78 ASN B 82 -1 O LYS B 79 N ILE B 70 SHEET 1 AB2 2 TYR B 50 ASN B 53 0 SHEET 2 AB2 2 LEU B 58 TYR B 62 -1 O LEU B 58 N ASN B 53 SHEET 1 AB3 5 GLU B 84 GLY B 85 0 SHEET 2 AB3 5 GLN B 131 ILE B 135 1 O TRP B 132 N GLU B 84 SHEET 3 AB3 5 PHE B 118 ASP B 122 -1 N PHE B 118 O ILE B 135 SHEET 4 AB3 5 VAL B 102 PHE B 106 -1 N LEU B 103 O LEU B 121 SHEET 5 AB3 5 CYS B 95 VAL B 99 -1 N CYS B 95 O PHE B 106 SHEET 1 AB4 2 HIS B 109 HIS B 110 0 SHEET 2 AB4 2 GLY B 113 ASN B 114 -1 O GLY B 113 N HIS B 110 SHEET 1 AB5 4 LYS B 145 ASP B 146 0 SHEET 2 AB5 4 LYS B 156 GLY B 164 -1 O TYR B 163 N ASP B 146 SHEET 3 AB5 4 GLY B 190 ASP B 199 -1 O LEU B 198 N LEU B 157 SHEET 4 AB5 4 PHE B 175 PHE B 177 -1 N GLU B 176 O TRP B 191 SHEET 1 AB6 4 GLY B 149 TYR B 153 0 SHEET 2 AB6 4 LYS B 156 GLY B 164 -1 O ILE B 158 N TRP B 151 SHEET 3 AB6 4 GLY B 190 ASP B 199 -1 O LEU B 198 N LEU B 157 SHEET 4 AB6 4 THR B 204 SER B 206 -1 O SER B 206 N ILE B 197 SHEET 1 AB7 4 ALA B 222 VAL B 226 0 SHEET 2 AB7 4 ARG B 229 TYR B 237 -1 O PHE B 231 N ALA B 224 SHEET 3 AB7 4 ALA B 240 ASN B 249 -1 O MET B 242 N GLY B 235 SHEET 4 AB7 4 TRP B 255 LEU B 258 -1 O LEU B 258 N LEU B 245 SHEET 1 AB8 4 SER B 272 PRO B 275 0 SHEET 2 AB8 4 HIS B 280 PHE B 284 -1 O PHE B 282 N THR B 274 SHEET 3 AB8 4 ALA B 297 CYS B 301 -1 O TRP B 298 N LEU B 283 SHEET 4 AB8 4 GLU B 306 PHE B 310 -1 O GLU B 306 N CYS B 301 SHEET 1 AB9 3 THR B 323 ALA B 326 0 SHEET 2 AB9 3 GLU B 331 PHE B 335 -1 O ILE B 333 N CYS B 325 SHEET 3 AB9 3 ILE B 354 SER B 358 -1 O LEU B 355 N VAL B 334 CRYST1 49.480 84.482 90.729 90.00 90.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011022 0.00000