HEADER ONCOPROTEIN 31-AUG-22 8EBZ TITLE CRYSTAL STRUCTURE OF GMPPNP-BOUND KRAS-G13D MUTANT AT 1.2 ANG TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, K-RAS, MUTANT, CANCER, ONCOPROTEIN, RAS, SMALL GTPASE, GMPPNP, KEYWDS 2 GPPNHP, G13D, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.CHAN,D.K.SIMANSHU REVDAT 5 23-OCT-24 8EBZ 1 REMARK REVDAT 4 15-NOV-23 8EBZ 1 REMARK REVDAT 3 25-OCT-23 8EBZ 1 REMARK REVDAT 2 21-JUN-23 8EBZ 1 JRNL REVDAT 1 07-JUN-23 8EBZ 0 JRNL AUTH F.A.CHAO,A.H.CHAN,S.DHARMAIAH,C.D.SCHWIETERS,T.H.TRAN, JRNL AUTH 2 T.TAYLOR,N.RAMAKRISHNAN,D.ESPOSITO,D.V.NISSLEY,F.MCCORMICK, JRNL AUTH 3 D.K.SIMANSHU,G.CORNILESCU JRNL TITL REDUCED DYNAMIC COMPLEXITY ALLOWS STRUCTURE ELUCIDATION OF JRNL TITL 2 AN EXCITED STATE OF KRAS G13D . JRNL REF COMMUN BIOL V. 6 594 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 37268708 JRNL DOI 10.1038/S42003-023-04960-6 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 48364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3490 - 3.7271 0.98 1561 178 0.1454 0.1464 REMARK 3 2 3.7271 - 2.9588 0.94 1455 171 0.1421 0.1445 REMARK 3 3 2.9588 - 2.5849 0.99 1528 169 0.1700 0.1773 REMARK 3 4 2.5849 - 2.3486 1.00 1502 179 0.1623 0.1863 REMARK 3 5 2.3486 - 2.1803 0.99 1538 162 0.1556 0.1630 REMARK 3 6 2.1803 - 2.0518 1.00 1512 173 0.1588 0.1787 REMARK 3 7 2.0518 - 1.9490 0.99 1534 171 0.1505 0.1494 REMARK 3 8 1.9490 - 1.8642 0.99 1508 166 0.1618 0.1702 REMARK 3 9 1.8642 - 1.7924 0.99 1535 161 0.1654 0.1798 REMARK 3 10 1.7924 - 1.7306 0.95 1406 172 0.1653 0.2058 REMARK 3 11 1.7306 - 1.6765 0.97 1502 153 0.1608 0.1629 REMARK 3 12 1.6765 - 1.6285 0.98 1469 189 0.1588 0.1670 REMARK 3 13 1.6285 - 1.5857 0.99 1501 153 0.1586 0.1903 REMARK 3 14 1.5857 - 1.5470 0.97 1453 177 0.1616 0.1821 REMARK 3 15 1.5470 - 1.5118 0.97 1461 160 0.1692 0.1936 REMARK 3 16 1.5118 - 1.4796 0.97 1499 162 0.1673 0.1740 REMARK 3 17 1.4796 - 1.4500 0.94 1412 169 0.1676 0.1838 REMARK 3 18 1.4500 - 1.4227 0.95 1428 161 0.1731 0.2005 REMARK 3 19 1.4227 - 1.3973 0.94 1435 130 0.1690 0.2396 REMARK 3 20 1.3973 - 1.3736 0.94 1425 168 0.1726 0.1989 REMARK 3 21 1.3736 - 1.3514 0.93 1379 166 0.1740 0.1792 REMARK 3 22 1.3514 - 1.3306 0.93 1458 148 0.1782 0.1997 REMARK 3 23 1.3306 - 1.3111 0.94 1394 155 0.1788 0.2090 REMARK 3 24 1.3111 - 1.2926 0.93 1411 141 0.1743 0.1989 REMARK 3 25 1.2926 - 1.2751 0.94 1438 169 0.1798 0.2137 REMARK 3 26 1.2751 - 1.2586 0.91 1343 157 0.1812 0.1915 REMARK 3 27 1.2586 - 1.2428 0.91 1327 152 0.1803 0.2055 REMARK 3 28 1.2428 - 1.2279 0.90 1383 156 0.1854 0.2044 REMARK 3 29 1.2279 - 1.2136 0.89 1364 158 0.1864 0.2196 REMARK 3 30 1.2136 - 1.2000 0.90 1336 141 0.1893 0.2142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5002 -21.4108 11.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.1418 T22: 0.0895 REMARK 3 T33: 0.1294 T12: -0.0130 REMARK 3 T13: -0.0105 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5857 L22: 0.2659 REMARK 3 L33: 0.4515 L12: 0.3909 REMARK 3 L13: 0.0669 L23: 0.3931 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: -0.0687 S13: -0.1446 REMARK 3 S21: 0.0819 S22: -0.0859 S23: -0.0919 REMARK 3 S31: 0.1412 S32: 0.0115 S33: -0.0056 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7314 -17.4304 4.2289 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1226 REMARK 3 T33: 0.1957 T12: 0.0147 REMARK 3 T13: -0.0068 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: -0.0229 L22: 0.2106 REMARK 3 L33: 0.1909 L12: -0.0192 REMARK 3 L13: -0.1002 L23: -0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: 0.0092 S13: 0.0166 REMARK 3 S21: -0.0772 S22: -0.0261 S23: 0.3052 REMARK 3 S31: 0.0180 S32: -0.1402 S33: 0.0070 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1858 -24.9055 15.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1021 REMARK 3 T33: 0.1945 T12: 0.0144 REMARK 3 T13: 0.0000 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1420 L22: 0.1807 REMARK 3 L33: 0.3284 L12: 0.2141 REMARK 3 L13: -0.1160 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0434 S13: -0.1858 REMARK 3 S21: -0.2487 S22: -0.0603 S23: 0.2293 REMARK 3 S31: -0.0046 S32: 0.0512 S33: 0.0016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2771 -7.2056 19.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1231 REMARK 3 T33: 0.1336 T12: -0.0118 REMARK 3 T13: 0.0084 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 0.3248 REMARK 3 L33: 0.3670 L12: 0.0341 REMARK 3 L13: -0.3150 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: -0.0883 S13: 0.1059 REMARK 3 S21: -0.3599 S22: -0.0748 S23: 0.1059 REMARK 3 S31: -0.1414 S32: 0.2172 S33: 0.0302 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4316 -14.5264 7.4961 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.1200 REMARK 3 T33: 0.0891 T12: -0.0012 REMARK 3 T13: 0.0026 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0556 L22: 0.1998 REMARK 3 L33: 0.1112 L12: 0.0663 REMARK 3 L13: -0.0158 L23: 0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0308 S13: 0.0254 REMARK 3 S21: 0.0428 S22: 0.0054 S23: -0.0338 REMARK 3 S31: -0.2528 S32: 0.1662 S33: 0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8120 -11.3040 8.1274 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.1399 REMARK 3 T33: 0.1056 T12: -0.0090 REMARK 3 T13: 0.0038 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.9136 L22: 0.6098 REMARK 3 L33: 0.2871 L12: 0.0735 REMARK 3 L13: -0.1814 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0357 S13: -0.0093 REMARK 3 S21: -0.0264 S22: 0.0484 S23: -0.0938 REMARK 3 S31: -0.0336 S32: 0.2204 S33: 0.0141 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0432 -14.2517 3.4191 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.3076 REMARK 3 T33: 0.1577 T12: 0.0169 REMARK 3 T13: 0.0009 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2108 L22: 0.2238 REMARK 3 L33: 1.0536 L12: 0.1489 REMARK 3 L13: 0.1909 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: 0.0994 S13: -0.1886 REMARK 3 S21: 0.0578 S22: 0.0981 S23: -0.2365 REMARK 3 S31: -0.1688 S32: 0.3968 S33: 0.0758 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9624 -22.2203 1.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.1374 REMARK 3 T33: 0.1310 T12: 0.0144 REMARK 3 T13: -0.0154 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.0538 L22: 0.0327 REMARK 3 L33: 0.1594 L12: 0.0985 REMARK 3 L13: 0.0097 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.0613 S13: -0.1772 REMARK 3 S21: 0.0495 S22: 0.0302 S23: -0.0209 REMARK 3 S31: 0.1677 S32: 0.1950 S33: 0.0014 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2066 -26.7574 14.7528 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.2005 REMARK 3 T33: 0.1803 T12: 0.0223 REMARK 3 T13: -0.0353 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.1130 L22: 0.4571 REMARK 3 L33: 0.1084 L12: -0.0418 REMARK 3 L13: -0.0355 L23: -0.1551 REMARK 3 S TENSOR REMARK 3 S11: 0.1718 S12: -0.1485 S13: -0.2899 REMARK 3 S21: -0.0137 S22: -0.1136 S23: -0.0835 REMARK 3 S31: 0.2969 S32: 0.1372 S33: -0.0273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.349 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.724 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3GFT REMARK 200 REMARK 200 REMARK: 3D RECTANGLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% PEG 400, 20% REMARK 280 PEG 8000, 50 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.46500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.46500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 398 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 483 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 LYS A 128 CD CE NZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 32.80 77.43 REMARK 500 ARG A 149 -0.41 80.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O3G 175.7 REMARK 620 3 GNP A 201 O2B 90.1 93.1 REMARK 620 4 HOH A 331 O 86.0 91.0 93.1 REMARK 620 5 HOH A 355 O 87.6 95.2 89.1 173.3 REMARK 620 6 HOH A 403 O 89.2 87.8 175.5 91.3 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 GLY A 138 O 72.3 REMARK 620 3 HOH A 319 O 55.2 20.1 REMARK 620 4 HOH A 341 O 66.6 21.1 31.2 REMARK 620 5 HOH A 393 O 68.2 19.7 15.1 38.8 REMARK 620 6 HOH A 454 O 48.5 23.8 10.8 26.1 25.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 O REMARK 620 2 HOH A 315 O 87.6 REMARK 620 3 HOH A 426 O 89.1 90.7 REMARK 620 4 HOH A 431 O 91.6 179.2 89.7 REMARK 620 5 HOH A 442 O 175.2 94.8 86.7 86.0 REMARK 620 6 HOH A 448 O 95.9 91.4 174.6 88.3 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 201 O2G REMARK 620 2 HOH A 339 O 171.4 REMARK 620 3 HOH A 359 O 93.7 94.9 REMARK 620 4 HOH A 377 O 86.1 85.3 179.5 REMARK 620 5 HOH A 416 O 90.5 91.2 84.8 95.7 REMARK 620 6 HOH A 432 O 92.6 86.8 87.5 92.0 171.8 REMARK 620 N 1 2 3 4 5 DBREF 8EBZ A 1 169 UNP P01116-2 RASK_HUMAN 1 169 SEQADV 8EBZ GLY A 0 UNP P01116-2 EXPRESSION TAG SEQADV 8EBZ ASP A 13 UNP P01116-2 GLY 13 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS MODRES 8EBZ CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *186(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 ARG A 73 1 7 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 ASP A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLU A 168 1 18 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.07 LINK OD2 ASP A 108 MG MG A 204 1555 2556 2.37 LINK O ASP A 119 MG MG A 205 1555 1555 2.13 LINK O GLY A 138 MG MG A 204 1555 1555 2.18 LINK O3G GNP A 201 MG MG A 202 1555 1555 2.02 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.08 LINK O2G GNP A 201 MG MG A 203 1555 1555 2.03 LINK MG MG A 202 O HOH A 331 1555 1555 2.08 LINK MG MG A 202 O HOH A 355 1555 1555 2.10 LINK MG MG A 202 O HOH A 403 1555 1555 2.12 LINK MG MG A 203 O HOH A 339 1555 4455 2.04 LINK MG MG A 203 O HOH A 359 1555 1555 2.04 LINK MG MG A 203 O HOH A 377 1555 1555 2.09 LINK MG MG A 203 O HOH A 416 1555 1555 2.08 LINK MG MG A 203 O HOH A 432 1555 1555 2.06 LINK MG MG A 204 O HOH A 319 1555 1555 2.13 LINK MG MG A 204 O HOH A 341 1555 1555 2.27 LINK MG MG A 204 O HOH A 393 1555 1555 1.98 LINK MG MG A 204 O HOH A 454 1555 1555 2.21 LINK MG MG A 205 O HOH A 315 1555 4445 1.97 LINK MG MG A 205 O HOH A 426 1555 1555 2.05 LINK MG MG A 205 O HOH A 431 1555 1555 1.99 LINK MG MG A 205 O HOH A 442 1555 1554 1.99 LINK MG MG A 205 O HOH A 448 1555 1555 2.00 CRYST1 120.930 38.230 36.320 90.00 103.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008269 0.000000 0.001952 0.00000 SCALE2 0.000000 0.026157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028289 0.00000