data_8ECA # _entry.id 8ECA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ECA pdb_00008eca 10.2210/pdb8eca/pdb WWPDB D_1000268194 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ECA _pdbx_database_status.recvd_initial_deposition_date 2022-09-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kreutzer, A.G.' 1 0000-0002-9724-6298 'Yoo, S.' 2 0000-0002-8982-7631 'Nowick, J.S.' 3 0000-0002-2273-1029 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first e2219216120 _citation.page_last e2219216120 _citation.title 'Probing differences among A beta oligomers with two triangular trimers derived from A beta.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2219216120 _citation.pdbx_database_id_PubMed 37216514 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kreutzer, A.G.' 1 0000-0002-9724-6298 primary 'Guaglianone, G.' 2 0000-0002-5189-2550 primary 'Yoo, S.' 3 ? primary 'Parrocha, C.M.T.' 4 ? primary 'Ruttenberg, S.M.' 5 0000-0003-4739-0619 primary 'Malonis, R.J.' 6 0000-0002-5759-3180 primary 'Tong, K.' 7 ? primary 'Lin, Y.F.' 8 0000-0003-0476-5193 primary 'Nguyen, J.T.' 9 0009-0004-9748-4378 primary 'Howitz, W.J.' 10 0000-0001-6323-7126 primary 'Diab, M.N.' 11 ? primary 'Hamza, I.L.' 12 ? primary 'Lai, J.R.' 13 0000-0002-4863-0015 primary 'Wysocki, V.H.' 14 0000-0003-0495-2538 primary 'Nowick, J.S.' 15 0000-0002-2273-1029 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8ECA _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.537 _cell.length_a_esd ? _cell.length_b 43.537 _cell.length_b_esd ? _cell.length_c 93.329 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ECA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ORN-LYS-LEU-VAL-PHE-PHE-ALA-GLU-ORN-CYS-ILE-ILE-SAR-CYS-MET 1816.320 6 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 4 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)KLVFFAE(ORN)CII(SAR)CMV' _entity_poly.pdbx_seq_one_letter_code_can AKLVFFAEACIIGCMV _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 LYS n 1 3 LEU n 1 4 VAL n 1 5 PHE n 1 6 PHE n 1 7 ALA n 1 8 GLU n 1 9 ORN n 1 10 CYS n 1 11 ILE n 1 12 ILE n 1 13 SAR n 1 14 CYS n 1 15 MET n 1 16 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8ECA _struct_ref.pdbx_db_accession 8ECA _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ECA A 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 2 1 8ECA B 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 3 1 8ECA C 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 4 1 8ECA D 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 5 1 8ECA E 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 6 1 8ECA F 1 ? 16 ? 8ECA 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ECA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris at pH 8.3, 0.2 M ammonium acetate, and 39% 2-methyl-2,4-pentanediol (MPD)' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 296.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-07-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8ECA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.270 _reflns.d_resolution_low 19.73 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8927 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.36 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 41.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.66 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.27 _reflns_shell.d_res_low 2.355 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 489 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.624 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ECA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.27 _refine.ls_d_res_low 19.73 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8927 _refine.ls_number_reflns_R_free 911 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.26 _refine.ls_percent_reflns_R_free 10.20 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2699 _refine.ls_R_factor_R_free 0.3181 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2645 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8EC9 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 41.11 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.27 _refine_hist.d_res_low 19.73 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 794 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 744 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? ? ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.127 ? ? ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 38.678 ? 218 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.055 ? 124 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 114 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.27 2.39 . . 116 1032 89.00 . . . . 0.4102 . . . . . . . . . . . 0.4424 'X-RAY DIFFRACTION' 2.39 2.54 . . 128 1145 100.00 . . . . 0.3693 . . . . . . . . . . . 0.4191 'X-RAY DIFFRACTION' 2.54 2.74 . . 134 1173 100.00 . . . . 0.3471 . . . . . . . . . . . 0.3543 'X-RAY DIFFRACTION' 2.74 3.01 . . 132 1156 100.00 . . . . 0.3356 . . . . . . . . . . . 0.4104 'X-RAY DIFFRACTION' 3.01 3.45 . . 124 1191 100.00 . . . . 0.3272 . . . . . . . . . . . 0.3782 'X-RAY DIFFRACTION' 3.45 4.34 . . 128 1171 100.00 . . . . 0.2285 . . . . . . . . . . . 0.3304 'X-RAY DIFFRACTION' 4.34 19.73 . . 149 1148 100.00 . . . . 0.2132 . . . . . . . . . . . 0.2460 # _struct.entry_id 8ECA _struct.title 'Covalently stabilized triangular trimer derived from Abeta16-36' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ECA _struct_keywords.text ;Abeta oligomer, beta-hairpin, trimer, dodecamer, Alzheimer's disease, DE NOVO PROTEIN ; _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 2 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 C CYS 14 SG ? ? A CYS 10 C CYS 14 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 D CYS 10 SG ? ? A CYS 14 D CYS 10 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 10 SG ? ? ? 1_555 E CYS 14 SG ? ? B CYS 10 E CYS 14 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? B CYS 14 SG ? ? ? 1_555 F CYS 10 SG ? ? B CYS 14 F CYS 10 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? C CYS 10 SG ? ? ? 1_555 D CYS 14 SG ? ? C CYS 10 D CYS 14 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf6 disulf ? ? E CYS 10 SG ? ? ? 1_555 F CYS 14 SG ? ? E CYS 10 F CYS 14 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? A ORN 1 C ? ? ? 1_555 A LYS 2 N ? ? A ORN 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A VAL 16 C ? ? A ORN 1 A VAL 16 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale3 covale both ? A GLU 8 C ? ? ? 1_555 A ORN 9 NE ? ? A GLU 8 A ORN 9 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale4 covale both ? A ORN 9 C ? ? ? 1_555 A CYS 10 N ? ? A ORN 9 A CYS 10 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale5 covale both ? A ILE 12 C ? ? ? 1_555 A SAR 13 N ? ? A ILE 12 A SAR 13 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A SAR 13 C ? ? ? 1_555 A CYS 14 N ? ? A SAR 13 A CYS 14 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? B ORN 1 C ? ? ? 1_555 B LYS 2 N ? ? B ORN 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale8 covale both ? B ORN 1 NE ? ? ? 1_555 B VAL 16 C ? ? B ORN 1 B VAL 16 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale9 covale both ? B GLU 8 C ? ? ? 1_555 B ORN 9 NE ? ? B GLU 8 B ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale10 covale both ? B ORN 9 C ? ? ? 1_555 B CYS 10 N ? ? B ORN 9 B CYS 10 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale11 covale both ? B ILE 12 C ? ? ? 1_555 B SAR 13 N ? ? B ILE 12 B SAR 13 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale12 covale both ? B SAR 13 C ? ? ? 1_555 B CYS 14 N ? ? B SAR 13 B CYS 14 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? C ORN 1 C ? ? ? 1_555 C LYS 2 N ? ? C ORN 1 C LYS 2 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale14 covale both ? C ORN 1 NE ? ? ? 1_555 C VAL 16 C ? ? C ORN 1 C VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale15 covale both ? C GLU 8 C ? ? ? 1_555 C ORN 9 NE ? ? C GLU 8 C ORN 9 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale16 covale both ? C ORN 9 C ? ? ? 1_555 C CYS 10 N ? ? C ORN 9 C CYS 10 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale17 covale both ? C ILE 12 C ? ? ? 1_555 C SAR 13 N ? ? C ILE 12 C SAR 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale18 covale both ? C SAR 13 C ? ? ? 1_555 C CYS 14 N ? ? C SAR 13 C CYS 14 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? D ORN 1 C ? ? ? 1_555 D LYS 2 N ? ? D ORN 1 D LYS 2 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale20 covale both ? D ORN 1 NE ? ? ? 1_555 D VAL 16 C ? ? D ORN 1 D VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale21 covale both ? D GLU 8 C ? ? ? 1_555 D ORN 9 NE ? ? D GLU 8 D ORN 9 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale22 covale both ? D ORN 9 C ? ? ? 1_555 D CYS 10 N ? ? D ORN 9 D CYS 10 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale23 covale both ? D ILE 12 C ? ? ? 1_555 D SAR 13 N ? ? D ILE 12 D SAR 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale24 covale both ? D SAR 13 C ? ? ? 1_555 D CYS 14 N ? ? D SAR 13 D CYS 14 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale25 covale both ? E ORN 1 C ? ? ? 1_555 E LYS 2 N ? ? E ORN 1 E LYS 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale26 covale both ? E ORN 1 NE ? ? ? 1_555 E VAL 16 C ? ? E ORN 1 E VAL 16 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale27 covale both ? E GLU 8 C ? ? ? 1_555 E ORN 9 NE ? ? E GLU 8 E ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale28 covale both ? E ORN 9 C ? ? ? 1_555 E CYS 10 N ? ? E ORN 9 E CYS 10 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale29 covale both ? E ILE 12 C ? ? ? 1_555 E SAR 13 N ? ? E ILE 12 E SAR 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? E SAR 13 C ? ? ? 1_555 E CYS 14 N ? ? E SAR 13 E CYS 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale31 covale both ? F ORN 1 C ? ? ? 1_555 F LYS 2 N ? ? F ORN 1 F LYS 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale32 covale both ? F ORN 1 NE ? ? ? 1_555 F VAL 16 C ? ? F ORN 1 F VAL 16 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale33 covale both ? F GLU 8 C ? ? ? 1_555 F ORN 9 NE ? ? F GLU 8 F ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale34 covale both ? F ORN 9 C ? ? ? 1_555 F CYS 10 N ? ? F ORN 9 F CYS 10 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale35 covale both ? F ILE 12 C ? ? ? 1_555 F SAR 13 N ? ? F ILE 12 F SAR 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale36 covale both ? F SAR 13 C ? ? ? 1_555 F CYS 14 N ? ? F SAR 13 F CYS 14 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 13 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 1 3 ? anti-parallel AA1 2 6 ? anti-parallel AA1 2 8 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 11 ? anti-parallel AA1 4 13 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 9 ? anti-parallel AA1 7 9 ? anti-parallel AA1 10 11 ? anti-parallel AA1 11 13 ? anti-parallel AA1 12 13 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? ALA A 7 ? LYS A 2 ALA A 7 AA1 2 CYS A 10 ? VAL A 16 ? CYS A 10 VAL A 16 AA1 3 LYS B 2 ? ALA B 7 ? LYS B 2 ALA B 7 AA1 4 CYS B 10 ? VAL B 16 ? CYS B 10 VAL B 16 AA1 5 LYS C 2 ? ALA C 7 ? LYS C 2 ALA C 7 AA1 6 CYS C 10 ? VAL C 16 ? CYS C 10 VAL C 16 AA1 7 LYS D 2 ? LEU D 3 ? LYS D 2 LEU D 3 AA1 8 CYS D 10 ? ILE D 11 ? CYS D 10 ILE D 11 AA1 9 SAR D 13 ? VAL D 16 ? SAR D 13 VAL D 16 AA1 10 LYS E 2 ? ALA E 7 ? LYS E 2 ALA E 7 AA1 11 CYS E 10 ? VAL E 16 ? CYS E 10 VAL E 16 AA1 12 LYS F 2 ? ALA F 7 ? LYS F 2 ALA F 7 AA1 13 CYS F 10 ? VAL F 16 ? CYS F 10 VAL F 16 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL A 4 O CYS A 14 ? O CYS A 14 AA1 1 3 N LEU A 3 ? N LEU A 3 O PHE B 5 ? O PHE B 5 AA1 2 6 N ILE A 11 ? N ILE A 11 O SAR C 13 ? O SAR C 13 AA1 2 8 N SAR A 13 ? N SAR A 13 O ILE D 11 ? O ILE D 11 AA1 3 4 N PHE B 6 ? N PHE B 6 O ILE B 12 ? O ILE B 12 AA1 4 11 N ILE B 11 ? N ILE B 11 O SAR E 13 ? O SAR E 13 AA1 4 13 N SAR B 13 ? N SAR B 13 O ILE F 11 ? O ILE F 11 AA1 5 6 N LYS C 2 ? N LYS C 2 O VAL C 16 ? O VAL C 16 AA1 6 9 N ILE C 11 ? N ILE C 11 O SAR D 13 ? O SAR D 13 AA1 7 9 N LYS D 2 ? N LYS D 2 O VAL D 16 ? O VAL D 16 AA1 10 11 N LYS E 2 ? N LYS E 2 O VAL E 16 ? O VAL E 16 AA1 11 13 N ILE E 11 ? N ILE E 11 O SAR F 13 ? O SAR F 13 AA1 12 13 N VAL F 4 ? N VAL F 4 O CYS F 14 ? O CYS F 14 # _atom_sites.entry_id 8ECA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022969 _atom_sites.fract_transf_matrix[1][2] 0.013261 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026522 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010715 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORN A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ORN 9 9 9 ORN ORN A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 SAR 13 13 13 SAR SAR A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 VAL 16 16 16 VAL VAL A . n B 1 1 ORN 1 1 1 ORN ORN B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 ORN 9 9 9 ORN ORN B . n B 1 10 CYS 10 10 10 CYS CYS B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 SAR 13 13 13 SAR SAR B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 MET 15 15 15 MET MET B . n B 1 16 VAL 16 16 16 VAL VAL B . n C 1 1 ORN 1 1 1 ORN ORN C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 LEU 3 3 3 LEU LEU C . n C 1 4 VAL 4 4 4 VAL VAL C . n C 1 5 PHE 5 5 5 PHE PHE C . n C 1 6 PHE 6 6 6 PHE PHE C . n C 1 7 ALA 7 7 7 ALA ALA C . n C 1 8 GLU 8 8 8 GLU GLU C . n C 1 9 ORN 9 9 9 ORN ORN C . n C 1 10 CYS 10 10 10 CYS CYS C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 ILE 12 12 12 ILE ILE C . n C 1 13 SAR 13 13 13 SAR SAR C . n C 1 14 CYS 14 14 14 CYS CYS C . n C 1 15 MET 15 15 15 MET MET C . n C 1 16 VAL 16 16 16 VAL VAL C . n D 1 1 ORN 1 1 1 ORN ORN D . n D 1 2 LYS 2 2 2 LYS LYS D . n D 1 3 LEU 3 3 3 LEU LEU D . n D 1 4 VAL 4 4 4 VAL VAL D . n D 1 5 PHE 5 5 5 PHE PHE D . n D 1 6 PHE 6 6 6 PHE PHE D . n D 1 7 ALA 7 7 7 ALA ALA D . n D 1 8 GLU 8 8 8 GLU GLU D . n D 1 9 ORN 9 9 9 ORN ORN D . n D 1 10 CYS 10 10 10 CYS CYS D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 ILE 12 12 12 ILE ILE D . n D 1 13 SAR 13 13 13 SAR SAR D . n D 1 14 CYS 14 14 14 CYS CYS D . n D 1 15 MET 15 15 15 MET MET D . n D 1 16 VAL 16 16 16 VAL VAL D . n E 1 1 ORN 1 1 1 ORN ORN E . n E 1 2 LYS 2 2 2 LYS LYS E . n E 1 3 LEU 3 3 3 LEU LEU E . n E 1 4 VAL 4 4 4 VAL VAL E . n E 1 5 PHE 5 5 5 PHE PHE E . n E 1 6 PHE 6 6 6 PHE PHE E . n E 1 7 ALA 7 7 7 ALA ALA E . n E 1 8 GLU 8 8 8 GLU GLU E . n E 1 9 ORN 9 9 9 ORN ORN E . n E 1 10 CYS 10 10 10 CYS CYS E . n E 1 11 ILE 11 11 11 ILE ILE E . n E 1 12 ILE 12 12 12 ILE ILE E . n E 1 13 SAR 13 13 13 SAR SAR E . n E 1 14 CYS 14 14 14 CYS CYS E . n E 1 15 MET 15 15 15 MET MET E . n E 1 16 VAL 16 16 16 VAL VAL E . n F 1 1 ORN 1 1 1 ORN ORN F . n F 1 2 LYS 2 2 2 LYS LYS F . n F 1 3 LEU 3 3 3 LEU LEU F . n F 1 4 VAL 4 4 4 VAL VAL F . n F 1 5 PHE 5 5 5 PHE PHE F . n F 1 6 PHE 6 6 6 PHE PHE F . n F 1 7 ALA 7 7 7 ALA ALA F . n F 1 8 GLU 8 8 8 GLU GLU F . n F 1 9 ORN 9 9 9 ORN ORN F . n F 1 10 CYS 10 10 10 CYS CYS F . n F 1 11 ILE 11 11 11 ILE ILE F . n F 1 12 ILE 12 12 12 ILE ILE F . n F 1 13 SAR 13 13 13 SAR SAR F . n F 1 14 CYS 14 14 14 CYS CYS F . n F 1 15 MET 15 15 15 MET MET F . n F 1 16 VAL 16 16 16 VAL VAL F . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email jsnowick@uci.edu _pdbx_contact_author.name_first James _pdbx_contact_author.name_last Nowick _pdbx_contact_author.name_mi S _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2273-1029 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MPD 1 101 1 MPD MPD A . H 2 MPD 1 101 2 MPD MPD D . I 2 MPD 1 102 3 MPD MPD D . J 3 CL 1 101 1 CL CL E . K 2 MPD 1 101 4 MPD MPD F . L 4 HOH 1 201 15 HOH HOH A . L 4 HOH 2 202 26 HOH HOH A . L 4 HOH 3 203 25 HOH HOH A . L 4 HOH 4 204 21 HOH HOH A . M 4 HOH 1 101 7 HOH HOH B . M 4 HOH 2 102 14 HOH HOH B . N 4 HOH 1 101 12 HOH HOH C . N 4 HOH 2 102 17 HOH HOH C . O 4 HOH 1 201 22 HOH HOH D . O 4 HOH 2 202 27 HOH HOH D . O 4 HOH 3 203 18 HOH HOH D . O 4 HOH 4 204 23 HOH HOH D . O 4 HOH 5 205 24 HOH HOH D . P 4 HOH 1 201 20 HOH HOH E . P 4 HOH 2 202 1 HOH HOH E . P 4 HOH 3 203 11 HOH HOH E . Q 4 HOH 1 201 2 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13780 ? 1 MORE -259 ? 1 'SSA (A^2)' 9160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -31.1096666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-31 2 'Structure model' 1 1 2023-06-07 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -5.5930 -2.8563 -5.5677 0.4586 ? -0.0023 ? -0.0408 ? 0.9740 ? 0.0702 ? 0.3059 ? 3.8906 ? 4.9186 ? -1.4750 ? 8.5965 ? -4.3232 ? 3.1367 ? 0.2656 ? -1.4155 ? -0.5640 ? 0.2797 ? 0.2951 ? 0.5296 ? 0.6218 ? -0.3001 ? -0.6372 ? 2 'X-RAY DIFFRACTION' ? refined -14.7975 7.1839 -3.3695 0.9487 ? 0.2855 ? 0.1333 ? 1.2086 ? -0.0176 ? 0.4270 ? 7.3388 ? 3.8245 ? -4.6614 ? 4.3382 ? -5.4102 ? 8.4112 ? 0.7100 ? 0.2353 ? 0.4624 ? 1.8233 ? 0.9927 ? -0.0252 ? -2.1703 ? -1.3546 ? -1.4082 ? 3 'X-RAY DIFFRACTION' ? refined -4.9804 -8.8400 -18.8306 0.4853 ? 0.1525 ? -0.0895 ? 0.4925 ? -0.0289 ? 0.5553 ? 7.0378 ? -1.9797 ? 0.5515 ? 6.6749 ? 2.4503 ? 7.6544 ? 0.6383 ? 0.7835 ? -1.1909 ? -0.5886 ? -0.5077 ? -0.5310 ? 1.5804 ? 1.3341 ? -0.0446 ? 4 'X-RAY DIFFRACTION' ? refined -15.9761 -12.8697 -9.4199 1.0730 ? -0.2460 ? 0.0770 ? 0.9359 ? 0.4228 ? 0.5669 ? 9.1539 ? 2.6354 ? 1.6847 ? 9.9196 ? 4.6540 ? 3.4896 ? 0.3481 ? -0.8719 ? -2.1067 ? 0.0904 ? 0.8422 ? -0.3096 ? 3.3138 ? -1.7254 ? -0.6725 ? 5 'X-RAY DIFFRACTION' ? refined -24.8251 -3.3043 -5.7386 0.4591 ? 0.0429 ? 0.3272 ? 2.1643 ? 0.2352 ? 0.2917 ? 4.0264 ? -2.1901 ? -3.4270 ? 2.7239 ? 3.6520 ? 5.0229 ? -0.4518 ? -0.3372 ? -0.2526 ? 0.6495 ? 0.5241 ? 0.8779 ? 0.2661 ? -1.7311 ? 0.0389 ? 6 'X-RAY DIFFRACTION' ? refined -25.9435 9.1876 -13.4286 0.6561 ? 0.4266 ? 0.0380 ? 1.6948 ? 0.0013 ? 0.7066 ? 7.3965 ? 3.0582 ? 7.2099 ? 6.9629 ? 1.8268 ? 7.2655 ? -0.4697 ? -1.1843 ? 1.0083 ? 0.6009 ? -0.5587 ? 2.0584 ? -0.8349 ? -1.8849 ? 1.3501 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 16) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 16) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 1 through 16) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'D' and resid 1 through 16) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'E' and resid 1 through 16) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'F' and resid 1 through 16) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 8ECA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 203 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 204 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.92 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 F _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 15 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 F _pdbx_validate_rmsd_angle.auth_comp_id_2 VAL _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 F _pdbx_validate_rmsd_angle.auth_comp_id_3 VAL _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 152.18 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation 30.48 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CL CL CL N N 14 CYS N N N N 15 CYS CA C N R 16 CYS C C N N 17 CYS O O N N 18 CYS CB C N N 19 CYS SG S N N 20 CYS OXT O N N 21 CYS H H N N 22 CYS H2 H N N 23 CYS HA H N N 24 CYS HB2 H N N 25 CYS HB3 H N N 26 CYS HG H N N 27 CYS HXT H N N 28 GLU N N N N 29 GLU CA C N S 30 GLU C C N N 31 GLU O O N N 32 GLU CB C N N 33 GLU CG C N N 34 GLU CD C N N 35 GLU OE1 O N N 36 GLU OE2 O N N 37 GLU OXT O N N 38 GLU H H N N 39 GLU H2 H N N 40 GLU HA H N N 41 GLU HB2 H N N 42 GLU HB3 H N N 43 GLU HG2 H N N 44 GLU HG3 H N N 45 GLU HE2 H N N 46 GLU HXT H N N 47 HOH O O N N 48 HOH H1 H N N 49 HOH H2 H N N 50 ILE N N N N 51 ILE CA C N S 52 ILE C C N N 53 ILE O O N N 54 ILE CB C N S 55 ILE CG1 C N N 56 ILE CG2 C N N 57 ILE CD1 C N N 58 ILE OXT O N N 59 ILE H H N N 60 ILE H2 H N N 61 ILE HA H N N 62 ILE HB H N N 63 ILE HG12 H N N 64 ILE HG13 H N N 65 ILE HG21 H N N 66 ILE HG22 H N N 67 ILE HG23 H N N 68 ILE HD11 H N N 69 ILE HD12 H N N 70 ILE HD13 H N N 71 ILE HXT H N N 72 LEU N N N N 73 LEU CA C N S 74 LEU C C N N 75 LEU O O N N 76 LEU CB C N N 77 LEU CG C N N 78 LEU CD1 C N N 79 LEU CD2 C N N 80 LEU OXT O N N 81 LEU H H N N 82 LEU H2 H N N 83 LEU HA H N N 84 LEU HB2 H N N 85 LEU HB3 H N N 86 LEU HG H N N 87 LEU HD11 H N N 88 LEU HD12 H N N 89 LEU HD13 H N N 90 LEU HD21 H N N 91 LEU HD22 H N N 92 LEU HD23 H N N 93 LEU HXT H N N 94 LYS N N N N 95 LYS CA C N S 96 LYS C C N N 97 LYS O O N N 98 LYS CB C N N 99 LYS CG C N N 100 LYS CD C N N 101 LYS CE C N N 102 LYS NZ N N N 103 LYS OXT O N N 104 LYS H H N N 105 LYS H2 H N N 106 LYS HA H N N 107 LYS HB2 H N N 108 LYS HB3 H N N 109 LYS HG2 H N N 110 LYS HG3 H N N 111 LYS HD2 H N N 112 LYS HD3 H N N 113 LYS HE2 H N N 114 LYS HE3 H N N 115 LYS HZ1 H N N 116 LYS HZ2 H N N 117 LYS HZ3 H N N 118 LYS HXT H N N 119 MET N N N N 120 MET CA C N S 121 MET C C N N 122 MET O O N N 123 MET CB C N N 124 MET CG C N N 125 MET SD S N N 126 MET CE C N N 127 MET OXT O N N 128 MET H H N N 129 MET H2 H N N 130 MET HA H N N 131 MET HB2 H N N 132 MET HB3 H N N 133 MET HG2 H N N 134 MET HG3 H N N 135 MET HE1 H N N 136 MET HE2 H N N 137 MET HE3 H N N 138 MET HXT H N N 139 MPD C1 C N N 140 MPD C2 C N N 141 MPD O2 O N N 142 MPD CM C N N 143 MPD C3 C N N 144 MPD C4 C N S 145 MPD O4 O N N 146 MPD C5 C N N 147 MPD H11 H N N 148 MPD H12 H N N 149 MPD H13 H N N 150 MPD HO2 H N N 151 MPD HM1 H N N 152 MPD HM2 H N N 153 MPD HM3 H N N 154 MPD H31 H N N 155 MPD H32 H N N 156 MPD H4 H N N 157 MPD HO4 H N N 158 MPD H51 H N N 159 MPD H52 H N N 160 MPD H53 H N N 161 ORN N N N N 162 ORN CA C N S 163 ORN CB C N N 164 ORN CG C N N 165 ORN CD C N N 166 ORN NE N N N 167 ORN C C N N 168 ORN O O N N 169 ORN OXT O N N 170 ORN H H N N 171 ORN H2 H N N 172 ORN HA H N N 173 ORN HB2 H N N 174 ORN HB3 H N N 175 ORN HG2 H N N 176 ORN HG3 H N N 177 ORN HD2 H N N 178 ORN HD3 H N N 179 ORN HE1 H N N 180 ORN HE2 H N N 181 ORN HXT H N N 182 PHE N N N N 183 PHE CA C N S 184 PHE C C N N 185 PHE O O N N 186 PHE CB C N N 187 PHE CG C Y N 188 PHE CD1 C Y N 189 PHE CD2 C Y N 190 PHE CE1 C Y N 191 PHE CE2 C Y N 192 PHE CZ C Y N 193 PHE OXT O N N 194 PHE H H N N 195 PHE H2 H N N 196 PHE HA H N N 197 PHE HB2 H N N 198 PHE HB3 H N N 199 PHE HD1 H N N 200 PHE HD2 H N N 201 PHE HE1 H N N 202 PHE HE2 H N N 203 PHE HZ H N N 204 PHE HXT H N N 205 SAR N N N N 206 SAR CA C N N 207 SAR C C N N 208 SAR O O N N 209 SAR CN C N N 210 SAR OXT O N N 211 SAR H H N N 212 SAR HA2 H N N 213 SAR HA3 H N N 214 SAR HN1 H N N 215 SAR HN2 H N N 216 SAR HN3 H N N 217 SAR HXT H N N 218 VAL N N N N 219 VAL CA C N S 220 VAL C C N N 221 VAL O O N N 222 VAL CB C N N 223 VAL CG1 C N N 224 VAL CG2 C N N 225 VAL OXT O N N 226 VAL H H N N 227 VAL H2 H N N 228 VAL HA H N N 229 VAL HB H N N 230 VAL HG11 H N N 231 VAL HG12 H N N 232 VAL HG13 H N N 233 VAL HG21 H N N 234 VAL HG22 H N N 235 VAL HG23 H N N 236 VAL HXT H N N 237 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 CYS N CA sing N N 13 CYS N H sing N N 14 CYS N H2 sing N N 15 CYS CA C sing N N 16 CYS CA CB sing N N 17 CYS CA HA sing N N 18 CYS C O doub N N 19 CYS C OXT sing N N 20 CYS CB SG sing N N 21 CYS CB HB2 sing N N 22 CYS CB HB3 sing N N 23 CYS SG HG sing N N 24 CYS OXT HXT sing N N 25 GLU N CA sing N N 26 GLU N H sing N N 27 GLU N H2 sing N N 28 GLU CA C sing N N 29 GLU CA CB sing N N 30 GLU CA HA sing N N 31 GLU C O doub N N 32 GLU C OXT sing N N 33 GLU CB CG sing N N 34 GLU CB HB2 sing N N 35 GLU CB HB3 sing N N 36 GLU CG CD sing N N 37 GLU CG HG2 sing N N 38 GLU CG HG3 sing N N 39 GLU CD OE1 doub N N 40 GLU CD OE2 sing N N 41 GLU OE2 HE2 sing N N 42 GLU OXT HXT sing N N 43 HOH O H1 sing N N 44 HOH O H2 sing N N 45 ILE N CA sing N N 46 ILE N H sing N N 47 ILE N H2 sing N N 48 ILE CA C sing N N 49 ILE CA CB sing N N 50 ILE CA HA sing N N 51 ILE C O doub N N 52 ILE C OXT sing N N 53 ILE CB CG1 sing N N 54 ILE CB CG2 sing N N 55 ILE CB HB sing N N 56 ILE CG1 CD1 sing N N 57 ILE CG1 HG12 sing N N 58 ILE CG1 HG13 sing N N 59 ILE CG2 HG21 sing N N 60 ILE CG2 HG22 sing N N 61 ILE CG2 HG23 sing N N 62 ILE CD1 HD11 sing N N 63 ILE CD1 HD12 sing N N 64 ILE CD1 HD13 sing N N 65 ILE OXT HXT sing N N 66 LEU N CA sing N N 67 LEU N H sing N N 68 LEU N H2 sing N N 69 LEU CA C sing N N 70 LEU CA CB sing N N 71 LEU CA HA sing N N 72 LEU C O doub N N 73 LEU C OXT sing N N 74 LEU CB CG sing N N 75 LEU CB HB2 sing N N 76 LEU CB HB3 sing N N 77 LEU CG CD1 sing N N 78 LEU CG CD2 sing N N 79 LEU CG HG sing N N 80 LEU CD1 HD11 sing N N 81 LEU CD1 HD12 sing N N 82 LEU CD1 HD13 sing N N 83 LEU CD2 HD21 sing N N 84 LEU CD2 HD22 sing N N 85 LEU CD2 HD23 sing N N 86 LEU OXT HXT sing N N 87 LYS N CA sing N N 88 LYS N H sing N N 89 LYS N H2 sing N N 90 LYS CA C sing N N 91 LYS CA CB sing N N 92 LYS CA HA sing N N 93 LYS C O doub N N 94 LYS C OXT sing N N 95 LYS CB CG sing N N 96 LYS CB HB2 sing N N 97 LYS CB HB3 sing N N 98 LYS CG CD sing N N 99 LYS CG HG2 sing N N 100 LYS CG HG3 sing N N 101 LYS CD CE sing N N 102 LYS CD HD2 sing N N 103 LYS CD HD3 sing N N 104 LYS CE NZ sing N N 105 LYS CE HE2 sing N N 106 LYS CE HE3 sing N N 107 LYS NZ HZ1 sing N N 108 LYS NZ HZ2 sing N N 109 LYS NZ HZ3 sing N N 110 LYS OXT HXT sing N N 111 MET N CA sing N N 112 MET N H sing N N 113 MET N H2 sing N N 114 MET CA C sing N N 115 MET CA CB sing N N 116 MET CA HA sing N N 117 MET C O doub N N 118 MET C OXT sing N N 119 MET CB CG sing N N 120 MET CB HB2 sing N N 121 MET CB HB3 sing N N 122 MET CG SD sing N N 123 MET CG HG2 sing N N 124 MET CG HG3 sing N N 125 MET SD CE sing N N 126 MET CE HE1 sing N N 127 MET CE HE2 sing N N 128 MET CE HE3 sing N N 129 MET OXT HXT sing N N 130 MPD C1 C2 sing N N 131 MPD C1 H11 sing N N 132 MPD C1 H12 sing N N 133 MPD C1 H13 sing N N 134 MPD C2 O2 sing N N 135 MPD C2 CM sing N N 136 MPD C2 C3 sing N N 137 MPD O2 HO2 sing N N 138 MPD CM HM1 sing N N 139 MPD CM HM2 sing N N 140 MPD CM HM3 sing N N 141 MPD C3 C4 sing N N 142 MPD C3 H31 sing N N 143 MPD C3 H32 sing N N 144 MPD C4 O4 sing N N 145 MPD C4 C5 sing N N 146 MPD C4 H4 sing N N 147 MPD O4 HO4 sing N N 148 MPD C5 H51 sing N N 149 MPD C5 H52 sing N N 150 MPD C5 H53 sing N N 151 ORN N CA sing N N 152 ORN N H sing N N 153 ORN N H2 sing N N 154 ORN CA CB sing N N 155 ORN CA C sing N N 156 ORN CA HA sing N N 157 ORN CB CG sing N N 158 ORN CB HB2 sing N N 159 ORN CB HB3 sing N N 160 ORN CG CD sing N N 161 ORN CG HG2 sing N N 162 ORN CG HG3 sing N N 163 ORN CD NE sing N N 164 ORN CD HD2 sing N N 165 ORN CD HD3 sing N N 166 ORN NE HE1 sing N N 167 ORN NE HE2 sing N N 168 ORN C O doub N N 169 ORN C OXT sing N N 170 ORN OXT HXT sing N N 171 PHE N CA sing N N 172 PHE N H sing N N 173 PHE N H2 sing N N 174 PHE CA C sing N N 175 PHE CA CB sing N N 176 PHE CA HA sing N N 177 PHE C O doub N N 178 PHE C OXT sing N N 179 PHE CB CG sing N N 180 PHE CB HB2 sing N N 181 PHE CB HB3 sing N N 182 PHE CG CD1 doub Y N 183 PHE CG CD2 sing Y N 184 PHE CD1 CE1 sing Y N 185 PHE CD1 HD1 sing N N 186 PHE CD2 CE2 doub Y N 187 PHE CD2 HD2 sing N N 188 PHE CE1 CZ doub Y N 189 PHE CE1 HE1 sing N N 190 PHE CE2 CZ sing Y N 191 PHE CE2 HE2 sing N N 192 PHE CZ HZ sing N N 193 PHE OXT HXT sing N N 194 SAR N CA sing N N 195 SAR N CN sing N N 196 SAR N H sing N N 197 SAR CA C sing N N 198 SAR CA HA2 sing N N 199 SAR CA HA3 sing N N 200 SAR C O doub N N 201 SAR C OXT sing N N 202 SAR CN HN1 sing N N 203 SAR CN HN2 sing N N 204 SAR CN HN3 sing N N 205 SAR OXT HXT sing N N 206 VAL N CA sing N N 207 VAL N H sing N N 208 VAL N H2 sing N N 209 VAL CA C sing N N 210 VAL CA CB sing N N 211 VAL CA HA sing N N 212 VAL C O doub N N 213 VAL C OXT sing N N 214 VAL CB CG1 sing N N 215 VAL CB CG2 sing N N 216 VAL CB HB sing N N 217 VAL CG1 HG11 sing N N 218 VAL CG1 HG12 sing N N 219 VAL CG1 HG13 sing N N 220 VAL CG2 HG21 sing N N 221 VAL CG2 HG22 sing N N 222 VAL CG2 HG23 sing N N 223 VAL OXT HXT sing N N 224 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 1RF1AG062296-01 1 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 1RF1AG072587-01 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8EC9 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #