HEADER IMMUNE SYSTEM 07-SEP-22 8EF0 TITLE CRYSTAL STRUCTURE OF A NHP ANTI-ZIKV NEUTRALIZING ANTIBODY RHMZ104-D COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHMZ104-D ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RHMZ104-D ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 10 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 11 ORGANISM_TAXID: 9544; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ZIKV, ZIKV-SPECIFIC, CROSS-PROTOMER EPITOPES, VIRAL PROTEIN, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SANKHALA,M.G.JOYCE REVDAT 1 30-AUG-23 8EF0 0 JRNL AUTH R.S.SANKHALA,V.DUSSUPT,G.DONOFRIO,G.D.GROMOWSKI, JRNL AUTH 2 R.A.DE LA BARRERA,R.A.LAROCCA,L.MENDEZ-RIVERA,A.LEE,M.CHOE, JRNL AUTH 3 W.ZAKY,G.MANTUS,J.L.JENSEN,W.H.CHEN,N.GOHAIN,H.BAI, JRNL AUTH 4 M.K.MCCRACKEN,R.D.MASON,D.LEGGAT,B.M.SLIKE,U.TRAN,N.JIAN, JRNL AUTH 5 P.ABBINK,R.PETERSON,E.A.MENDES,R.FREITAS DE OLIVEIRA FRANCA, JRNL AUTH 6 G.A.CALVET,A.M.BISPO DE FILIPPIS,A.MCDERMOTT,M.ROEDERER, JRNL AUTH 7 M.HERNANDEZ,A.ALBERTUS,E.DAVIDSON,B.J.DORANZ,M.ROLLAND, JRNL AUTH 8 M.L.ROBB,R.M.LYNCH,D.H.BAROUCH,R.G.JARMAN,S.J.THOMAS, JRNL AUTH 9 K.MODJARRAD,N.L.MICHAEL,S.J.KREBS,M.G.JOYCE JRNL TITL ZIKA-SPECIFIC NEUTRALIZING ANTIBODIES TARGETING INTER-DIMER JRNL TITL 2 ENVELOPE EPITOPES. JRNL REF CELL REP V. 42 12942 2023 JRNL REFN ESSN 2211-1247 JRNL PMID 37561630 JRNL DOI 10.1016/J.CELREP.2023.112942 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 14291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9470 - 4.2668 0.98 3085 160 0.1624 0.2054 REMARK 3 2 4.2668 - 3.4323 0.99 2986 156 0.1675 0.2156 REMARK 3 3 3.4323 - 3.0122 0.99 2969 156 0.1989 0.2674 REMARK 3 4 3.0122 - 2.7432 0.91 2706 148 0.2272 0.2968 REMARK 3 5 2.7432 - 2.5501 0.61 1822 103 0.2482 0.3217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3421 REMARK 3 ANGLE : 0.817 4664 REMARK 3 CHIRALITY : 0.047 515 REMARK 3 PLANARITY : 0.005 596 REMARK 3 DIHEDRAL : 8.783 2034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 2:99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.883 57.506 7.975 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.4272 REMARK 3 T33: 0.3048 T12: 0.2083 REMARK 3 T13: -0.0403 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.8861 L22: 3.5552 REMARK 3 L33: 1.4912 L12: 1.1969 REMARK 3 L13: -0.6736 L23: -1.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.1579 S12: -0.2094 S13: 0.3704 REMARK 3 S21: -0.1373 S22: -0.0314 S23: 0.5083 REMARK 3 S31: -0.3364 S32: -0.6394 S33: -0.1039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 100:138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.942 54.423 12.898 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: 0.2789 REMARK 3 T33: 0.2575 T12: 0.2746 REMARK 3 T13: -0.0699 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.2016 L22: 1.2941 REMARK 3 L33: 2.1816 L12: 0.2529 REMARK 3 L13: 0.1599 L23: 1.2255 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.1911 S13: 0.5271 REMARK 3 S21: -0.9517 S22: 0.6430 S23: 0.1831 REMARK 3 S31: -1.1053 S32: -0.2870 S33: 0.9875 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 139:179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.315 35.163 29.354 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.4797 REMARK 3 T33: 0.2899 T12: 0.0667 REMARK 3 T13: 0.0030 T23: 0.1197 REMARK 3 L TENSOR REMARK 3 L11: 4.4879 L22: 4.1281 REMARK 3 L33: 3.0246 L12: 0.6219 REMARK 3 L13: 0.7480 L23: 1.1339 REMARK 3 S TENSOR REMARK 3 S11: -0.4202 S12: -0.1599 S13: -0.3910 REMARK 3 S21: 0.4242 S22: 0.2679 S23: 0.0685 REMARK 3 S31: -0.0268 S32: 0.7444 S33: 0.1384 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 180:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.919 34.869 28.284 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.2834 REMARK 3 T33: 0.3400 T12: 0.0118 REMARK 3 T13: 0.0276 T23: 0.1463 REMARK 3 L TENSOR REMARK 3 L11: 3.5122 L22: 1.1894 REMARK 3 L33: 1.8640 L12: -0.1809 REMARK 3 L13: -0.8396 L23: -0.6298 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.1991 S13: 0.2683 REMARK 3 S21: 0.1544 S22: -0.0403 S23: 0.2013 REMARK 3 S31: -0.0333 S32: 0.0618 S33: 0.1726 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.697 57.616 2.163 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.1856 REMARK 3 T33: 0.2131 T12: -0.0281 REMARK 3 T13: 0.0145 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 4.3893 L22: 4.9298 REMARK 3 L33: 1.9666 L12: -1.6073 REMARK 3 L13: -0.5349 L23: -0.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.2617 S13: 0.3155 REMARK 3 S21: 0.1496 S22: 0.0595 S23: -0.3137 REMARK 3 S31: -0.2551 S32: 0.0772 S33: 0.1900 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 18:40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.826 65.676 0.444 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.2478 REMARK 3 T33: 0.3202 T12: -0.0003 REMARK 3 T13: -0.1112 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.4501 L22: 2.4011 REMARK 3 L33: 1.9072 L12: -0.5782 REMARK 3 L13: -0.9600 L23: -0.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.0299 S13: 0.9536 REMARK 3 S21: -0.1806 S22: 0.0408 S23: -0.1466 REMARK 3 S31: -0.6246 S32: 0.0766 S33: 0.1485 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN L AND RESID 41:83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.661 67.964 8.156 REMARK 3 T TENSOR REMARK 3 T11: 0.6117 T22: 0.2187 REMARK 3 T33: 0.5086 T12: 0.0014 REMARK 3 T13: -0.1550 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 3.2235 L22: 2.5226 REMARK 3 L33: 0.8831 L12: -0.8885 REMARK 3 L13: -0.7838 L23: 0.5140 REMARK 3 S TENSOR REMARK 3 S11: -0.1217 S12: -0.5426 S13: 0.8653 REMARK 3 S21: 0.3133 S22: 0.0349 S23: -0.5390 REMARK 3 S31: -0.6278 S32: 0.0837 S33: -0.1095 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN L AND RESID 84:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.849 60.310 9.385 REMARK 3 T TENSOR REMARK 3 T11: 0.4385 T22: 0.2113 REMARK 3 T33: 0.2298 T12: 0.0549 REMARK 3 T13: -0.0533 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 5.8542 L22: 3.7689 REMARK 3 L33: 1.4002 L12: -0.3730 REMARK 3 L13: -0.1782 L23: -0.2008 REMARK 3 S TENSOR REMARK 3 S11: -0.4963 S12: -0.4783 S13: 0.3248 REMARK 3 S21: 0.6259 S22: 0.1242 S23: -0.0797 REMARK 3 S31: -0.6017 S32: -0.1418 S33: 0.2220 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN L AND RESID 101:115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.064 59.124 2.708 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2345 REMARK 3 T33: 0.2260 T12: 0.0356 REMARK 3 T13: -0.1231 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 5.5530 L22: 3.8460 REMARK 3 L33: 1.2076 L12: -0.5804 REMARK 3 L13: -0.1428 L23: 0.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.2456 S12: 0.6037 S13: -0.0178 REMARK 3 S21: -0.0252 S22: 0.0087 S23: 0.3925 REMARK 3 S31: -0.4390 S32: -0.1216 S33: 0.1175 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN L AND RESID 116:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.558 29.804 23.227 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.2874 REMARK 3 T33: 0.2914 T12: 0.0683 REMARK 3 T13: 0.0388 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 3.5189 L22: 3.2739 REMARK 3 L33: 2.1851 L12: 0.3396 REMARK 3 L13: -0.9838 L23: -1.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.3039 S12: -0.0374 S13: -0.4292 REMARK 3 S21: 0.1359 S22: -0.0164 S23: 0.2531 REMARK 3 S31: 0.0684 S32: -0.0788 S33: 0.3219 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN L AND RESID 150:160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.138 30.089 15.271 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.3717 REMARK 3 T33: 0.4422 T12: 0.0625 REMARK 3 T13: -0.0391 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.4935 L22: 1.6544 REMARK 3 L33: 1.4300 L12: 1.6970 REMARK 3 L13: -1.0135 L23: 0.4681 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.6678 S13: -0.9099 REMARK 3 S21: -0.0667 S22: -0.2110 S23: -0.4752 REMARK 3 S31: 0.2170 S32: 0.1418 S33: 0.2846 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN L AND RESID 161:191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.344 31.041 16.244 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.3362 REMARK 3 T33: 0.2861 T12: 0.0552 REMARK 3 T13: 0.0427 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 4.8252 L22: 3.9041 REMARK 3 L33: 4.1627 L12: 0.7249 REMARK 3 L13: -0.5979 L23: -0.6733 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: 0.3772 S13: -0.2039 REMARK 3 S21: -0.0705 S22: 0.1649 S23: 0.5615 REMARK 3 S31: -0.0031 S32: -0.1380 S33: 0.0816 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN L AND RESID 192:207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.291 18.139 21.148 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.1895 REMARK 3 T33: 1.0526 T12: 0.1791 REMARK 3 T13: 0.2911 T23: 0.2265 REMARK 3 L TENSOR REMARK 3 L11: 2.7553 L22: 2.6775 REMARK 3 L33: 1.6113 L12: 0.3729 REMARK 3 L13: -0.4564 L23: -0.6921 REMARK 3 S TENSOR REMARK 3 S11: -0.4978 S12: -0.3783 S13: -1.7439 REMARK 3 S21: 0.4097 S22: 0.1999 S23: 0.4296 REMARK 3 S31: 0.8465 S32: 0.0600 S33: 0.4336 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN L AND RESID 208:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.168 25.329 22.344 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.3090 REMARK 3 T33: 0.4387 T12: -0.0828 REMARK 3 T13: 0.1527 T23: 0.2889 REMARK 3 L TENSOR REMARK 3 L11: 1.3499 L22: 3.1383 REMARK 3 L33: 3.2956 L12: 1.7523 REMARK 3 L13: -0.4856 L23: -0.8365 REMARK 3 S TENSOR REMARK 3 S11: -0.6134 S12: -0.2669 S13: -0.4643 REMARK 3 S21: -0.2158 S22: -0.1400 S23: -0.5711 REMARK 3 S31: -0.0509 S32: 0.6318 S33: -0.3857 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17381 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19400 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.96000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8K, 0.2M ZNAC, 0.1M TRIS-HCL REMARK 280 (PH8.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.66067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.33033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.33033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.66067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 GLY H 99A REMARK 465 GLY H 99B REMARK 465 VAL H 99C REMARK 465 LYS H 214 REMARK 465 ALA L 209 REMARK 465 GLU L 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP L 85 O HOH L 401 1.89 REMARK 500 O HOH H 429 O HOH H 446 1.91 REMARK 500 O HOH H 409 O HOH H 450 1.93 REMARK 500 N VAL H 2 O HOH H 401 1.96 REMARK 500 O HOH L 437 O HOH L 452 1.99 REMARK 500 OG1 THR L 105 O HOH L 402 2.04 REMARK 500 O THR H 100D OH TYR L 34 2.04 REMARK 500 OD2 ASP L 151 O HOH L 403 2.07 REMARK 500 O HOH L 415 O HOH L 443 2.09 REMARK 500 O HOH L 422 O HOH L 441 2.10 REMARK 500 OD2 ASP L 138 O HOH L 404 2.11 REMARK 500 OE2 GLU H 148 O HOH H 402 2.14 REMARK 500 N SER L 14 O HOH L 405 2.16 REMARK 500 O ALA L 143 O HOH L 406 2.17 REMARK 500 O HOH L 459 O HOH L 462 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 100A 27.45 -141.66 REMARK 500 GLN L 54C 113.27 -164.48 REMARK 500 ALA L 95 58.97 -115.15 REMARK 500 ASN L 95A -65.53 -29.60 REMARK 500 LYS L 186 -6.48 70.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 457 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 164 NE2 REMARK 620 2 ASP L 138 OD2 131.7 REMARK 620 3 HOH L 404 O 114.7 54.5 REMARK 620 4 HOH L 450 O 109.3 92.2 135.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 197 ND1 REMARK 620 2 HOH L 451 O 103.2 REMARK 620 3 HOH L 458 O 114.4 116.1 REMARK 620 N 1 2 DBREF 8EF0 H 1 214 PDB 8EF0 8EF0 1 214 DBREF 8EF0 L 1 210 PDB 8EF0 8EF0 1 210 SEQRES 1 H 228 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ALA LYS SEQRES 2 H 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 228 PHE THR PHE SER ASP TYR TYR MET ASP TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ARG ILE SER SEQRES 5 H 228 ASN GLY GLY GLY SER THR TRP TYR ALA ASP SER VAL LYS SEQRES 6 H 228 GLY ARG PHE THR ILE SER ARG GLU ASN ALA LYS ASN THR SEQRES 7 H 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA ARG GLU ARG TYR CYS SER GLY SEQRES 9 H 228 GLY VAL CYS TYR ALA GLY THR LYS TYR PHE ASP TYR TRP SEQRES 10 H 228 GLY GLN GLY VAL LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 228 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER ARG SEQRES 12 H 228 SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 228 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 228 SER GLY SER LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 228 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 228 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 228 VAL CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 228 ASP LYS ARG VAL GLU ILE LYS SEQRES 1 L 220 GLN PRO VAL LEU THR GLN PRO PRO SER LEU SER ALA SER SEQRES 2 L 220 PRO GLY ALA SER ALA ARG LEU PRO CYS THR LEU SER SER SEQRES 3 L 220 ASP LEU SER VAL GLY SER LYS ASN MET TYR TRP TYR GLN SEQRES 4 L 220 GLN LYS PRO GLY SER ALA PRO ARG LEU PHE LEU TYR TYR SEQRES 5 L 220 TYR SER ASP SER ASP LYS GLN LEU GLY PRO GLY VAL PRO SEQRES 6 L 220 ASN ARG VAL SER GLY SER LYS GLU THR SER SER ASN THR SEQRES 7 L 220 ALA PHE LEU LEU ILE SER GLY LEU GLN PRO GLU ASP GLU SEQRES 8 L 220 ALA ASP TYR TYR CYS GLN VAL TYR ASP SER SER ALA ASN SEQRES 9 L 220 TRP VAL PHE GLY GLY GLY THR ARG LEU THR VAL LEU GLY SEQRES 10 L 220 GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SEQRES 11 L 220 SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL SEQRES 12 L 220 CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL GLU VAL SEQRES 13 L 220 ALA TRP LYS ALA ASP GLY SER ALA VAL ASN ALA GLY VAL SEQRES 14 L 220 GLU THR THR LYS PRO SER LYS GLN SER ASN ASN LYS TYR SEQRES 15 L 220 ALA ALA SER SER TYR LEU SER LEU THR SER ASP GLN TRP SEQRES 16 L 220 LYS SER HIS LYS SER TYR SER CYS GLN VAL THR HIS GLU SEQRES 17 L 220 GLY SER THR VAL GLU LYS THR VAL ALA PRO ALA GLU HET ZN H 301 1 HET ZN L 301 1 HET ZN L 302 1 HET PO4 L 303 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *119(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 SER H 158 5 3 HELIX 4 AA4 SER H 187 THR H 191 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 SER L 27C LYS L 31 5 5 HELIX 7 AA7 GLN L 79 GLU L 83 5 5 HELIX 8 AA8 SER L 121 ALA L 127 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 GLU H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 ALA H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O LEU H 108 N GLY H 10 SHEET 3 AA2 6 ALA H 88 GLU H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TRP H 58 N ARG H 50 SHEET 1 AA3 4 GLY H 10 ALA H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O LEU H 108 N GLY H 10 SHEET 3 AA3 4 ALA H 88 GLU H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 PHE H 100G TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 VAL H 195 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA5 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA6 4 LEU L 4 THR L 5 0 SHEET 2 AA6 4 ALA L 19 LEU L 25 -1 O THR L 24 N THR L 5 SHEET 3 AA6 4 THR L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA6 4 VAL L 62 GLU L 66A-1 N GLU L 66A O THR L 70 SHEET 1 AA7 6 SER L 9 ALA L 13 0 SHEET 2 AA7 6 THR L 102 VAL L 106 1 O THR L 105 N ALA L 13 SHEET 3 AA7 6 ASP L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 MET L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA7 6 ARG L 45 TYR L 50 -1 O ARG L 45 N GLN L 37 SHEET 6 AA7 6 LYS L 54B LEU L 54D-1 O GLN L 54C N TYR L 49 SHEET 1 AA8 4 SER L 9 ALA L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O THR L 105 N ALA L 13 SHEET 3 AA8 4 ASP L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 TRP L 96 PHE L 98 -1 O VAL L 97 N VAL L 90 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 LYS L 129 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AA9 4 TYR L 172 THR L 181 -1 O ALA L 174 N ILE L 136 SHEET 4 AA9 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 LYS L 129 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB1 4 TYR L 172 THR L 181 -1 O ALA L 174 N ILE L 136 SHEET 4 AB1 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB2 4 SER L 153 VAL L 155 0 SHEET 2 AB2 4 GLU L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB2 4 TYR L 191 HIS L 197 -1 O THR L 196 N GLU L 145 SHEET 4 AB2 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.04 LINK NE2 HIS H 164 ZN ZN H 301 1555 1555 2.10 LINK ZN ZN H 301 OD2 ASP L 138 1555 1555 2.41 LINK ZN ZN H 301 O HOH L 404 1555 1555 2.18 LINK ZN ZN H 301 O HOH L 450 1555 1555 2.23 LINK NE2 HIS L 188 ZN ZN L 302 1555 1555 1.89 LINK ND1 HIS L 197 ZN ZN L 301 1555 1555 2.12 LINK ZN ZN L 301 O HOH L 451 1555 1555 2.16 LINK ZN ZN L 301 O HOH L 458 1555 1555 2.58 CISPEP 1 GLU H 148 PRO H 149 0 1.61 CISPEP 2 TYR L 140 PRO L 141 0 -0.46 CRYST1 71.728 71.728 159.991 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013942 0.008049 0.000000 0.00000 SCALE2 0.000000 0.016098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006250 0.00000