HEADER IMMUNE SYSTEM 08-SEP-22 8EFN TITLE STRUCTURE OF SP-STING3 FROM STYLOPHORA PISTILLATA CORAL IN COMPLEX TITLE 2 WITH 3',3'-CGAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: STIMULATOR OF INTERFERON GENES PROTEIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STYLOPHORA PISTILLATA; SOURCE 3 ORGANISM_TAXID: 50429; SOURCE 4 GENE: TMEM173, AWC38_SPISGENE6026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE RECEPTOR, CGAS-STING, CORAL, INNATE IMMUNITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,K.M.SLAVIK,B.R.MOREHOUSE,K.MEARS,P.J.KRANZUSCH REVDAT 4 25-OCT-23 8EFN 1 REMARK REVDAT 3 02-AUG-23 8EFN 1 JRNL REVDAT 2 12-JUL-23 8EFN 1 JRNL REVDAT 1 05-JUL-23 8EFN 0 JRNL AUTH Y.LI,K.M.SLAVIK,H.C.TOYODA,B.R.MOREHOUSE, JRNL AUTH 2 C.C.DE OLIVEIRA MANN,A.ELEK,S.LEVY,Z.WANG,K.S.MEARS,J.LIU, JRNL AUTH 3 D.KASHIN,X.GUO,T.MASS,A.SEBE-PEDROS,F.SCHWEDE,P.J.KRANZUSCH JRNL TITL CGLRS ARE A DIVERSE FAMILY OF PATTERN RECOGNITION RECEPTORS JRNL TITL 2 IN INNATE IMMUNITY. JRNL REF CELL V. 186 3261 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37379839 JRNL DOI 10.1016/J.CELL.2023.05.038 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8400 - 4.1700 1.00 2789 153 0.1654 0.1641 REMARK 3 2 4.1700 - 3.3100 1.00 2664 143 0.1512 0.1780 REMARK 3 3 3.3100 - 2.8900 1.00 2641 145 0.1688 0.2102 REMARK 3 4 2.8900 - 2.6300 1.00 2610 145 0.1698 0.2081 REMARK 3 5 2.6300 - 2.4400 1.00 2604 146 0.1714 0.1902 REMARK 3 6 2.4400 - 2.2900 1.00 2613 143 0.1659 0.1856 REMARK 3 7 2.2900 - 2.1800 1.00 2574 144 0.1581 0.1862 REMARK 3 8 2.1800 - 2.0800 1.00 2583 139 0.1652 0.2094 REMARK 3 9 2.0800 - 2.0000 1.00 2580 148 0.1738 0.1976 REMARK 3 10 2.0000 - 1.9400 1.00 2578 135 0.1806 0.2100 REMARK 3 11 1.9400 - 1.8700 1.00 2557 146 0.1721 0.2063 REMARK 3 12 1.8700 - 1.8200 1.00 2577 143 0.1990 0.2354 REMARK 3 13 1.8200 - 1.7700 1.00 2553 131 0.2272 0.2419 REMARK 3 14 1.7700 - 1.7300 0.99 2546 144 0.2727 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.156 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3026 REMARK 3 ANGLE : 0.728 4096 REMARK 3 CHIRALITY : 0.050 444 REMARK 3 PLANARITY : 0.005 500 REMARK 3 DIHEDRAL : 13.834 1116 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7564 56.9940 34.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.0923 REMARK 3 T33: 0.0977 T12: 0.0017 REMARK 3 T13: 0.0215 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.4915 L22: 3.2261 REMARK 3 L33: 1.5523 L12: 1.4070 REMARK 3 L13: -0.9025 L23: -0.3281 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: -0.1060 S13: -0.1965 REMARK 3 S21: 0.2595 S22: -0.0713 S23: -0.0298 REMARK 3 S31: 0.1175 S32: -0.0778 S33: 0.1003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5614 59.0587 26.0244 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1485 REMARK 3 T33: 0.1368 T12: 0.0047 REMARK 3 T13: 0.0157 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.4399 L22: 2.9497 REMARK 3 L33: 0.6262 L12: 0.3361 REMARK 3 L13: 0.0031 L23: 1.3242 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0626 S13: 0.0188 REMARK 3 S21: 0.0144 S22: -0.1765 S23: 0.3004 REMARK 3 S31: -0.0176 S32: -0.1186 S33: 0.1810 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2020 57.8570 21.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1065 REMARK 3 T33: 0.1674 T12: 0.0198 REMARK 3 T13: 0.0093 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.0484 L22: 1.5442 REMARK 3 L33: 1.4746 L12: 0.1840 REMARK 3 L13: -0.0558 L23: 0.6023 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.0926 S13: -0.1555 REMARK 3 S21: -0.3619 S22: -0.2233 S23: 0.1490 REMARK 3 S31: -0.0358 S32: -0.1070 S33: 0.1060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0929 51.9959 21.6706 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1142 REMARK 3 T33: 0.1644 T12: 0.0495 REMARK 3 T13: 0.0231 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.1433 L22: 3.3449 REMARK 3 L33: 1.6605 L12: 1.2983 REMARK 3 L13: -0.7340 L23: 0.3064 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.0710 S13: -0.2161 REMARK 3 S21: -0.0456 S22: 0.0439 S23: -0.2040 REMARK 3 S31: -0.0591 S32: -0.0127 S33: 0.0102 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 170 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8775 80.8633 25.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.1579 REMARK 3 T33: 0.0976 T12: 0.0120 REMARK 3 T13: -0.0220 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.6325 L22: 3.0622 REMARK 3 L33: 1.9726 L12: -1.4705 REMARK 3 L13: -0.7598 L23: 0.9948 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.0756 S13: 0.1142 REMARK 3 S21: -0.2051 S22: -0.0316 S23: 0.1896 REMARK 3 S31: -0.1140 S32: -0.2910 S33: 0.0159 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 210 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8937 78.7818 34.2360 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.1070 REMARK 3 T33: 0.0739 T12: 0.0156 REMARK 3 T13: 0.0054 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.7506 L22: 2.4027 REMARK 3 L33: 1.0934 L12: 0.1073 REMARK 3 L13: -0.0193 L23: 1.0629 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0986 S13: 0.0086 REMARK 3 S21: 0.2481 S22: -0.1114 S23: 0.1606 REMARK 3 S31: 0.0479 S32: -0.0496 S33: 0.0789 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 261 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9590 79.7434 34.1078 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.0809 REMARK 3 T33: 0.1180 T12: -0.0399 REMARK 3 T13: -0.0237 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.2913 L22: 2.0345 REMARK 3 L33: 1.7782 L12: -0.5447 REMARK 3 L13: -0.1027 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: -0.0373 S13: 0.1195 REMARK 3 S21: 0.1300 S22: -0.0794 S23: -0.2759 REMARK 3 S31: -0.0183 S32: 0.0598 S33: -0.0686 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 293 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4300 85.6484 25.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1111 REMARK 3 T33: 0.0974 T12: -0.0342 REMARK 3 T13: 0.0200 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 1.6558 L22: 2.3849 REMARK 3 L33: 1.8890 L12: -0.0868 REMARK 3 L13: -0.3723 L23: 0.9673 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0220 S13: 0.0888 REMARK 3 S21: -0.2010 S22: 0.0942 S23: -0.1225 REMARK 3 S31: -0.1710 S32: 0.0583 S33: -0.0831 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 38.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: 8EFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 100 MM BIS-TRIS PROPANE, REMARK 280 PH 6.4, 250 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.73450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.39800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.35100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.39800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.73450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.35100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 345 REMARK 465 GLN A 346 REMARK 465 VAL A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 GLU A 351 REMARK 465 ALA A 352 REMARK 465 ASP A 353 REMARK 465 LEU A 354 REMARK 465 THR D 345 REMARK 465 GLN D 346 REMARK 465 VAL D 347 REMARK 465 GLU D 348 REMARK 465 SER D 349 REMARK 465 ASP D 350 REMARK 465 GLU D 351 REMARK 465 ALA D 352 REMARK 465 ASP D 353 REMARK 465 LEU D 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 598 O HOH D 602 1.84 REMARK 500 OE2 GLU A 200 O HOH A 501 2.01 REMARK 500 O HOH D 529 O HOH D 606 2.02 REMARK 500 O HOH D 539 O HOH D 613 2.02 REMARK 500 OE2 GLU A 312 O HOH A 502 2.04 REMARK 500 O HOH D 604 O HOH D 605 2.08 REMARK 500 OD1 ASP A 236 O HOH A 503 2.10 REMARK 500 O HOH D 518 O HOH D 520 2.10 REMARK 500 O HOH D 567 O HOH D 606 2.14 REMARK 500 O HOH D 607 O HOH D 615 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 527 O HOH D 534 3645 1.96 REMARK 500 O HOH A 600 O HOH D 513 3645 2.03 REMARK 500 O HOH A 513 O HOH D 609 3645 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 183 -65.87 -142.07 REMARK 500 ASP A 263 0.36 -66.49 REMARK 500 ALA A 274 92.86 -67.69 REMARK 500 ASP A 288 42.78 -100.98 REMARK 500 TYR D 183 -64.17 -145.08 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8EFN A 170 354 UNP A0A2B4SES9_STYPI DBREF2 8EFN A A0A2B4SES9 170 354 DBREF1 8EFN D 170 354 UNP A0A2B4SES9_STYPI DBREF2 8EFN D A0A2B4SES9 170 354 SEQRES 1 A 185 ASN VAL ALA ASP GLY PHE ALA TRP ASN TYR TYR PHE GLY SEQRES 2 A 185 TYR LEU LYS LEU VAL LEU PRO ARG LEU GLU ALA GLN ILE SEQRES 3 A 185 ALA LYS SER SER GLU PHE ARG TYR LYS ILE THR LYS LYS SEQRES 4 A 185 LYS LEU TYR ILE LEU VAL PRO LYS THR CYS TYR VAL TYR SEQRES 5 A 185 ASP ASN ILE ALA ASP ALA ASP PRO ARG VAL THR TRP ALA SEQRES 6 A 185 GLY ASP LEU THR PRO CYS LYS ILE ASN ARG GLY GLY ILE SEQRES 7 A 185 LYS GLU ARG ILE TYR LYS GLN ALA VAL TYR ARG VAL ALA SEQRES 8 A 185 MET THR ASP LYS HIS GLU TYR PHE PHE ILE LEU GLU TYR SEQRES 9 A 185 ALA SER ASN LEU MET SER LEU TYR ASP MET SER LEU HIS SEQRES 10 A 185 GLU ASP ALA PRO LEU SER ARG GLN GLU ARG ASP ASP GLN SEQRES 11 A 185 VAL VAL LEU PHE ILE ARG LYS LEU ARG GLU ILE LEU GLU SEQRES 12 A 185 GLY CYS LYS GLU CYS ARG GLY LYS CYS GLU ILE VAL PRO SEQRES 13 A 185 ILE SER GLY ASP GLU LYS SER LYS ILE ALA ASP VAL LEU SEQRES 14 A 185 VAL ALA ILE HIS ASN ALA THR GLN VAL GLU SER ASP GLU SEQRES 15 A 185 ALA ASP LEU SEQRES 1 D 185 ASN VAL ALA ASP GLY PHE ALA TRP ASN TYR TYR PHE GLY SEQRES 2 D 185 TYR LEU LYS LEU VAL LEU PRO ARG LEU GLU ALA GLN ILE SEQRES 3 D 185 ALA LYS SER SER GLU PHE ARG TYR LYS ILE THR LYS LYS SEQRES 4 D 185 LYS LEU TYR ILE LEU VAL PRO LYS THR CYS TYR VAL TYR SEQRES 5 D 185 ASP ASN ILE ALA ASP ALA ASP PRO ARG VAL THR TRP ALA SEQRES 6 D 185 GLY ASP LEU THR PRO CYS LYS ILE ASN ARG GLY GLY ILE SEQRES 7 D 185 LYS GLU ARG ILE TYR LYS GLN ALA VAL TYR ARG VAL ALA SEQRES 8 D 185 MET THR ASP LYS HIS GLU TYR PHE PHE ILE LEU GLU TYR SEQRES 9 D 185 ALA SER ASN LEU MET SER LEU TYR ASP MET SER LEU HIS SEQRES 10 D 185 GLU ASP ALA PRO LEU SER ARG GLN GLU ARG ASP ASP GLN SEQRES 11 D 185 VAL VAL LEU PHE ILE ARG LYS LEU ARG GLU ILE LEU GLU SEQRES 12 D 185 GLY CYS LYS GLU CYS ARG GLY LYS CYS GLU ILE VAL PRO SEQRES 13 D 185 ILE SER GLY ASP GLU LYS SER LYS ILE ALA ASP VAL LEU SEQRES 14 D 185 VAL ALA ILE HIS ASN ALA THR GLN VAL GLU SER ASP GLU SEQRES 15 D 185 ALA ASP LEU HET EDO A 401 4 HET EDO A 402 4 HET 4BW D 401 90 HET EDO D 402 4 HET EDO D 403 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM 4BW 2-AMINO-9-[(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-9- HETNAM 2 4BW (6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12- HETNAM 3 4BW DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9, HETNAM 4 4BW 2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO- HETNAM 5 4BW 6H-PURIN-6-ONE HETSYN EDO ETHYLENE GLYCOL HETSYN 4BW 3',3' CGAMP; C-GMP-AMP; C[G(3',5')PA(3',5')P] FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 4BW C20 H24 N10 O13 P2 FORMUL 8 HOH *223(H2 O) HELIX 1 AA1 ASN A 170 TYR A 183 1 14 HELIX 2 AA2 TYR A 183 SER A 198 1 16 HELIX 3 AA3 ASN A 223 ALA A 227 5 5 HELIX 4 AA4 ASN A 276 HIS A 286 1 11 HELIX 5 AA5 SER A 292 GLY A 313 1 22 HELIX 6 AA6 CYS A 314 GLY A 319 1 6 HELIX 7 AA7 SER A 327 SER A 332 5 6 HELIX 8 AA8 LYS A 333 ASN A 343 1 11 HELIX 9 AA9 VAL D 171 TYR D 183 1 13 HELIX 10 AB1 TYR D 183 LEU D 188 1 6 HELIX 11 AB2 ARG D 190 LYS D 197 1 8 HELIX 12 AB3 ASN D 223 ALA D 227 5 5 HELIX 13 AB4 ASN D 276 HIS D 286 1 11 HELIX 14 AB5 SER D 292 GLY D 313 1 22 HELIX 15 AB6 SER D 327 SER D 332 5 6 HELIX 16 AB7 LYS D 333 ASN D 343 1 11 SHEET 1 AA1 5 VAL A 231 ASP A 236 0 SHEET 2 AA1 5 ALA A 255 ALA A 260 -1 O ARG A 258 N THR A 232 SHEET 3 AA1 5 GLU A 266 TYR A 273 -1 O PHE A 269 N TYR A 257 SHEET 4 AA1 5 LEU A 210 PRO A 215 1 N LEU A 213 O GLU A 272 SHEET 5 AA1 5 CYS A 321 ILE A 326 1 O VAL A 324 N ILE A 212 SHEET 1 AA2 2 CYS A 240 ARG A 244 0 SHEET 2 AA2 2 ILE A 247 TYR A 252 -1 O TYR A 252 N CYS A 240 SHEET 1 AA3 5 VAL D 231 ASP D 236 0 SHEET 2 AA3 5 ALA D 255 ALA D 260 -1 O ARG D 258 N THR D 232 SHEET 3 AA3 5 GLU D 266 TYR D 273 -1 O PHE D 269 N TYR D 257 SHEET 4 AA3 5 LEU D 210 PRO D 215 1 N LEU D 213 O GLU D 272 SHEET 5 AA3 5 CYS D 321 ILE D 326 1 O VAL D 324 N ILE D 212 SHEET 1 AA4 2 CYS D 240 ARG D 244 0 SHEET 2 AA4 2 ILE D 247 TYR D 252 -1 O TYR D 252 N CYS D 240 CRYST1 51.469 82.702 84.796 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011793 0.00000