HEADER TRANSFERASE/LIPID BINDING PROTEIN 08-SEP-22 8EFP TITLE CRYOEM STRUCTURE OF GSDMB IN COMPLEX WITH SHIGELLA IPAH7.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE E3 UBIQUITIN-PROTEIN LIGASE IPAH7.8; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: PROBABLE RING-TYPE E3 UBIQUITIN TRANSFERASE IPAH7.8; COMPND 5 EC: 2.3.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GASDERMIN-B; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: GASDERMIN-LIKE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPAH7.8, CP0078, PWR501_0084, SFLP133; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: GSDMB, GSDML, PP4052, PRO2521; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GSDMB, GSDMD, PYROPTOSIS, UBIQUITINATION, ANTIMICROBIAL PROTEIN, KEYWDS 2 TRANSFERASE-LIPID BINDING PROTEIN COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.WANG,J.RUAN REVDAT 4 19-JUN-24 8EFP 1 REMARK REVDAT 3 03-MAY-23 8EFP 1 JRNL REVDAT 2 12-APR-23 8EFP 1 JRNL REVDAT 1 29-MAR-23 8EFP 0 JRNL AUTH C.WANG,S.SHIVCHARAN,T.TIAN,S.WRIGHT,D.MA,J.CHANG,K.LI, JRNL AUTH 2 K.SONG,C.XU,V.A.RATHINAM,J.RUAN JRNL TITL STRUCTURAL BASIS FOR GSDMB PORE FORMATION AND ITS TARGETING JRNL TITL 2 BY IPAH7.8. JRNL REF NATURE V. 616 590 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 36991122 JRNL DOI 10.1038/S41586-023-05832-Z REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 113959 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8EFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268340. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GSDMB-IPAH7.8; E3 UBIQUITIN REMARK 245 -PROTEIN LIGASE IPAH7.8; REMARK 245 GASDERMIN-B REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : DIFFRACTION REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6695.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 ASN B 6 REMARK 465 THR B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 VAL B 11 REMARK 465 SER B 12 REMARK 465 CYS B 13 REMARK 465 SER B 14 REMARK 465 PRO B 15 REMARK 465 SER B 16 REMARK 465 ILE B 17 REMARK 465 ASN B 18 REMARK 465 SER B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 GLY B 265 REMARK 465 GLN B 266 REMARK 465 GLN B 267 REMARK 465 ASN B 268 REMARK 465 THR B 269 REMARK 465 LEU B 270 REMARK 465 HIS B 271 REMARK 465 ARG B 272 REMARK 465 PRO B 273 REMARK 465 LEU B 274 REMARK 465 ALA B 275 REMARK 465 ASP B 276 REMARK 465 ALA B 277 REMARK 465 VAL B 278 REMARK 465 THR B 279 REMARK 465 ALA B 280 REMARK 465 TRP B 281 REMARK 465 PHE B 282 REMARK 465 PRO B 283 REMARK 465 GLU B 284 REMARK 465 ASN B 285 REMARK 465 LYS B 286 REMARK 465 GLN B 287 REMARK 465 SER B 288 REMARK 465 ASP B 289 REMARK 465 VAL B 290 REMARK 465 SER B 291 REMARK 465 GLN B 292 REMARK 465 ILE B 293 REMARK 465 TRP B 294 REMARK 465 HIS B 295 REMARK 465 ALA B 296 REMARK 465 PHE B 297 REMARK 465 GLU B 298 REMARK 465 HIS B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 301 REMARK 465 HIS B 302 REMARK 465 ALA B 303 REMARK 465 ASN B 304 REMARK 465 THR B 305 REMARK 465 PHE B 306 REMARK 465 SER B 307 REMARK 465 ALA B 308 REMARK 465 PHE B 309 REMARK 465 LEU B 310 REMARK 465 ASP B 311 REMARK 465 ARG B 312 REMARK 465 LEU B 313 REMARK 465 SER B 314 REMARK 465 ASP B 315 REMARK 465 THR B 316 REMARK 465 VAL B 317 REMARK 465 SER B 318 REMARK 465 ALA B 319 REMARK 465 ARG B 320 REMARK 465 ASN B 321 REMARK 465 THR B 322 REMARK 465 SER B 323 REMARK 465 GLY B 324 REMARK 465 PHE B 325 REMARK 465 ARG B 326 REMARK 465 GLU B 327 REMARK 465 GLN B 328 REMARK 465 VAL B 329 REMARK 465 ALA B 330 REMARK 465 ALA B 331 REMARK 465 TRP B 332 REMARK 465 LEU B 333 REMARK 465 GLU B 334 REMARK 465 LYS B 335 REMARK 465 LEU B 336 REMARK 465 SER B 337 REMARK 465 ALA B 338 REMARK 465 SER B 339 REMARK 465 ALA B 340 REMARK 465 GLU B 341 REMARK 465 LEU B 342 REMARK 465 ARG B 343 REMARK 465 GLN B 344 REMARK 465 GLN B 345 REMARK 465 SER B 346 REMARK 465 PHE B 347 REMARK 465 ALA B 348 REMARK 465 VAL B 349 REMARK 465 ALA B 350 REMARK 465 ALA B 351 REMARK 465 ASP B 352 REMARK 465 ALA B 353 REMARK 465 THR B 354 REMARK 465 GLU B 355 REMARK 465 SER B 356 REMARK 465 CYS B 357 REMARK 465 GLU B 358 REMARK 465 ASP B 359 REMARK 465 ARG B 360 REMARK 465 VAL B 361 REMARK 465 ALA B 362 REMARK 465 LEU B 363 REMARK 465 THR B 364 REMARK 465 TRP B 365 REMARK 465 ASN B 366 REMARK 465 ASN B 367 REMARK 465 LEU B 368 REMARK 465 ARG B 369 REMARK 465 LYS B 370 REMARK 465 THR B 371 REMARK 465 LEU B 372 REMARK 465 LEU B 373 REMARK 465 VAL B 374 REMARK 465 HIS B 375 REMARK 465 GLN B 376 REMARK 465 ALA B 377 REMARK 465 SER B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 LEU B 381 REMARK 465 PHE B 382 REMARK 465 ASP B 383 REMARK 465 ASN B 384 REMARK 465 ASP B 385 REMARK 465 THR B 386 REMARK 465 GLY B 387 REMARK 465 ALA B 388 REMARK 465 LEU B 389 REMARK 465 LEU B 390 REMARK 465 SER B 391 REMARK 465 LEU B 392 REMARK 465 GLY B 393 REMARK 465 ARG B 394 REMARK 465 GLU B 395 REMARK 465 MET B 396 REMARK 465 PHE B 397 REMARK 465 ARG B 398 REMARK 465 LEU B 399 REMARK 465 GLU B 400 REMARK 465 ILE B 401 REMARK 465 LEU B 402 REMARK 465 GLU B 403 REMARK 465 ASP B 404 REMARK 465 ILE B 405 REMARK 465 ALA B 406 REMARK 465 ARG B 407 REMARK 465 ASP B 408 REMARK 465 LYS B 409 REMARK 465 VAL B 410 REMARK 465 ARG B 411 REMARK 465 THR B 412 REMARK 465 LEU B 413 REMARK 465 HIS B 414 REMARK 465 PHE B 415 REMARK 465 VAL B 416 REMARK 465 ASP B 417 REMARK 465 GLU B 418 REMARK 465 ILE B 419 REMARK 465 GLU B 420 REMARK 465 VAL B 421 REMARK 465 TYR B 422 REMARK 465 LEU B 423 REMARK 465 ALA B 424 REMARK 465 PHE B 425 REMARK 465 GLN B 426 REMARK 465 THR B 427 REMARK 465 MET B 428 REMARK 465 LEU B 429 REMARK 465 ALA B 430 REMARK 465 GLU B 431 REMARK 465 LYS B 432 REMARK 465 LEU B 433 REMARK 465 GLN B 434 REMARK 465 LEU B 435 REMARK 465 SER B 436 REMARK 465 THR B 437 REMARK 465 ALA B 438 REMARK 465 VAL B 439 REMARK 465 LYS B 440 REMARK 465 GLU B 441 REMARK 465 MET B 442 REMARK 465 ARG B 443 REMARK 465 PHE B 444 REMARK 465 TYR B 445 REMARK 465 GLY B 446 REMARK 465 VAL B 447 REMARK 465 SER B 448 REMARK 465 GLY B 449 REMARK 465 VAL B 450 REMARK 465 THR B 451 REMARK 465 ALA B 452 REMARK 465 ASN B 453 REMARK 465 ASP B 454 REMARK 465 LEU B 455 REMARK 465 ARG B 456 REMARK 465 THR B 457 REMARK 465 ALA B 458 REMARK 465 GLU B 459 REMARK 465 ALA B 460 REMARK 465 MET B 461 REMARK 465 VAL B 462 REMARK 465 ARG B 463 REMARK 465 SER B 464 REMARK 465 ARG B 465 REMARK 465 GLU B 466 REMARK 465 GLU B 467 REMARK 465 ASN B 468 REMARK 465 GLU B 469 REMARK 465 PHE B 470 REMARK 465 THR B 471 REMARK 465 ASP B 472 REMARK 465 TRP B 473 REMARK 465 PHE B 474 REMARK 465 SER B 475 REMARK 465 LEU B 476 REMARK 465 TRP B 477 REMARK 465 GLY B 478 REMARK 465 PRO B 479 REMARK 465 TRP B 480 REMARK 465 HIS B 481 REMARK 465 ALA B 482 REMARK 465 VAL B 483 REMARK 465 LEU B 484 REMARK 465 LYS B 485 REMARK 465 ARG B 486 REMARK 465 THR B 487 REMARK 465 GLU B 488 REMARK 465 ALA B 489 REMARK 465 ASP B 490 REMARK 465 ARG B 491 REMARK 465 TRP B 492 REMARK 465 ALA B 493 REMARK 465 GLN B 494 REMARK 465 ALA B 495 REMARK 465 GLU B 496 REMARK 465 GLU B 497 REMARK 465 GLN B 498 REMARK 465 LYS B 499 REMARK 465 TYR B 500 REMARK 465 GLU B 501 REMARK 465 MET B 502 REMARK 465 LEU B 503 REMARK 465 GLU B 504 REMARK 465 ASN B 505 REMARK 465 GLU B 506 REMARK 465 TYR B 507 REMARK 465 SER B 508 REMARK 465 GLN B 509 REMARK 465 ARG B 510 REMARK 465 VAL B 511 REMARK 465 ALA B 512 REMARK 465 ASP B 513 REMARK 465 ARG B 514 REMARK 465 LEU B 515 REMARK 465 LYS B 516 REMARK 465 ALA B 517 REMARK 465 SER B 518 REMARK 465 GLY B 519 REMARK 465 LEU B 520 REMARK 465 SER B 521 REMARK 465 GLY B 522 REMARK 465 ASP B 523 REMARK 465 ALA B 524 REMARK 465 ASP B 525 REMARK 465 ALA B 526 REMARK 465 GLU B 527 REMARK 465 ARG B 528 REMARK 465 GLU B 529 REMARK 465 ALA B 530 REMARK 465 GLY B 531 REMARK 465 ALA B 532 REMARK 465 GLN B 533 REMARK 465 VAL B 534 REMARK 465 MET B 535 REMARK 465 ARG B 536 REMARK 465 GLU B 537 REMARK 465 THR B 538 REMARK 465 GLU B 539 REMARK 465 GLN B 540 REMARK 465 GLN B 541 REMARK 465 ILE B 542 REMARK 465 TYR B 543 REMARK 465 ARG B 544 REMARK 465 GLN B 545 REMARK 465 LEU B 546 REMARK 465 THR B 547 REMARK 465 ASP B 548 REMARK 465 GLU B 549 REMARK 465 VAL B 550 REMARK 465 LEU B 551 REMARK 465 ALA B 552 REMARK 465 LEU B 553 REMARK 465 ARG B 554 REMARK 465 LEU B 555 REMARK 465 SER B 556 REMARK 465 GLU B 557 REMARK 465 ASN B 558 REMARK 465 GLY B 559 REMARK 465 SER B 560 REMARK 465 ARG B 561 REMARK 465 LEU B 562 REMARK 465 HIS B 563 REMARK 465 HIS B 564 REMARK 465 SER B 565 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ASP C 91 REMARK 465 SER C 92 REMARK 465 THR C 93 REMARK 465 GLY C 94 REMARK 465 GLU C 95 REMARK 465 LEU C 96 REMARK 465 ILE C 97 REMARK 465 VAL C 98 REMARK 465 ARG C 99 REMARK 465 LEU C 100 REMARK 465 PRO C 101 REMARK 465 LYS C 102 REMARK 465 GLU C 103 REMARK 465 ILE C 104 REMARK 465 THR C 105 REMARK 465 ILE C 106 REMARK 465 SER C 107 REMARK 465 GLY C 108 REMARK 465 SER C 109 REMARK 465 PHE C 110 REMARK 465 GLN C 111 REMARK 465 GLY C 112 REMARK 465 PHE C 113 REMARK 465 HIS C 114 REMARK 465 GLU C 217A REMARK 465 THR C 217B REMARK 465 MET C 217C REMARK 465 ASN C 217D REMARK 465 ILE C 217E REMARK 465 HIS C 217F REMARK 465 PHE C 217G REMARK 465 ARG C 217H REMARK 465 GLY C 217I REMARK 465 LYS C 217J REMARK 465 THR C 217K REMARK 465 LYS C 217L REMARK 465 SER C 217M REMARK 465 PHE C 217N REMARK 465 PRO C 217O REMARK 465 GLU C 217P REMARK 465 GLU C 217Q REMARK 465 LYS C 217R REMARK 465 ASP C 217S REMARK 465 GLY C 217T REMARK 465 ALA C 217U REMARK 465 SER C 217V REMARK 465 SER C 217W REMARK 465 CYS C 217X REMARK 465 LEU C 217Y REMARK 465 GLY C 217Z REMARK 465 LYS C 218A REMARK 465 SER C 218B REMARK 465 LEU C 218C REMARK 465 GLY C 218D REMARK 465 SER C 218E REMARK 465 GLU C 218F REMARK 465 ASP C 218G REMARK 465 SER C 218H REMARK 465 THR C 407 REMARK 465 SER C 408 REMARK 465 VAL C 409 REMARK 465 SER C 410 REMARK 465 SER C 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 THR C 45 OG1 CG2 REMARK 470 PHE C 46 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 141 CG CD OE1 OE2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 LEU C 170 CG CD1 CD2 REMARK 470 ARG C 247 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 248 CG OD1 ND2 REMARK 470 MET C 249 CG SD CE REMARK 470 LYS C 250 CG CD CE NZ REMARK 470 GLU C 251 CG CD OE1 OE2 REMARK 470 LYS C 252 CG CD CE NZ REMARK 470 LEU C 253 CG CD1 CD2 REMARK 470 GLU C 254 CG CD OE1 OE2 REMARK 470 ASP C 255 CG OD1 OD2 REMARK 470 MET C 256 CG SD CE REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 470 SER C 258 OG REMARK 470 VAL C 259 CG1 CG2 REMARK 470 LEU C 260 CG CD1 CD2 REMARK 470 LYS C 261 CG CD CE NZ REMARK 470 ASP C 262 CG OD1 OD2 REMARK 470 LEU C 263 CG CD1 CD2 REMARK 470 THR C 264 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 95 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ALA B 97 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 PHE B 98 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 SER C 180 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 GLN C 194 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 ARG C 195 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU C 212 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 VAL C 213 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 PRO C 215 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 40 69.91 -66.96 REMARK 500 GLU B 43 47.33 -89.32 REMARK 500 ASN B 57 -10.46 75.63 REMARK 500 VAL B 61 -48.13 63.08 REMARK 500 ALA B 97 108.94 -166.22 REMARK 500 PHE B 98 -160.56 -114.09 REMARK 500 LEU B 99 -52.74 -134.49 REMARK 500 LYS B 100 -63.13 -133.30 REMARK 500 ASN B 107 -60.09 -103.40 REMARK 500 LEU B 135 78.67 -115.86 REMARK 500 ASN B 137 172.94 64.37 REMARK 500 PRO B 173 -167.96 -76.80 REMARK 500 GLN B 212 42.53 -103.89 REMARK 500 LYS C 43 47.78 -92.00 REMARK 500 ASN C 150 32.10 -95.57 REMARK 500 ASP C 173 -72.68 -121.73 REMARK 500 ARG C 174 159.05 176.18 REMARK 500 TYR C 176 -156.72 -152.39 REMARK 500 LYS C 177 -104.45 -113.36 REMARK 500 ARG C 203 -167.30 -123.40 REMARK 500 LEU C 279 36.35 -98.51 REMARK 500 GLU C 341 14.02 51.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28087 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF GSDMB IN COMPLEX WITH SHIGELLA IPAH7.8 DBREF 8EFP B 1 565 UNP P18014 IPA7_SHIFL 1 565 DBREF 8EFP C 1 411 UNP Q8TAX9 GSDMB_HUMAN 1 416 SEQRES 1 B 565 MET PHE SER VAL ASN ASN THR HIS SER SER VAL SER CYS SEQRES 2 B 565 SER PRO SER ILE ASN SER ASN SER THR SER ASN GLU HIS SEQRES 3 B 565 TYR LEU ARG ILE LEU THR GLU TRP GLU LYS ASN SER SER SEQRES 4 B 565 PRO GLY GLU GLU ARG GLY ILE ALA PHE ASN ARG LEU SER SEQRES 5 B 565 GLN CYS PHE GLN ASN GLN GLU ALA VAL LEU ASN LEU SER SEQRES 6 B 565 ASP LEU ASN LEU THR SER LEU PRO GLU LEU PRO LYS HIS SEQRES 7 B 565 ILE SER ALA LEU ILE VAL GLU ASN ASN LYS LEU THR SER SEQRES 8 B 565 LEU PRO LYS LEU PRO ALA PHE LEU LYS GLU LEU ASN ALA SEQRES 9 B 565 ASP ASN ASN ARG LEU SER VAL ILE PRO GLU LEU PRO GLU SEQRES 10 B 565 SER LEU THR THR LEU SER VAL ARG SER ASN GLN LEU GLU SEQRES 11 B 565 ASN LEU PRO VAL LEU PRO ASN HIS LEU THR SER LEU PHE SEQRES 12 B 565 VAL GLU ASN ASN ARG LEU TYR ASN LEU PRO ALA LEU PRO SEQRES 13 B 565 GLU LYS LEU LYS PHE LEU HIS VAL TYR TYR ASN ARG LEU SEQRES 14 B 565 THR THR LEU PRO ASP LEU PRO ASP LYS LEU GLU ILE LEU SEQRES 15 B 565 CYS ALA GLN ARG ASN ASN LEU VAL THR PHE PRO GLN PHE SEQRES 16 B 565 SER ASP ARG ASN ASN ILE ARG GLN LYS GLU TYR TYR PHE SEQRES 17 B 565 HIS PHE ASN GLN ILE THR THR LEU PRO GLU SER PHE SER SEQRES 18 B 565 GLN LEU ASP SER SER TYR ARG ILE ASN ILE SER GLY ASN SEQRES 19 B 565 PRO LEU SER THR ARG VAL LEU GLN SER LEU GLN ARG LEU SEQRES 20 B 565 THR SER SER PRO ASP TYR HIS GLY PRO GLN ILE TYR PHE SEQRES 21 B 565 SER MET SER ASP GLY GLN GLN ASN THR LEU HIS ARG PRO SEQRES 22 B 565 LEU ALA ASP ALA VAL THR ALA TRP PHE PRO GLU ASN LYS SEQRES 23 B 565 GLN SER ASP VAL SER GLN ILE TRP HIS ALA PHE GLU HIS SEQRES 24 B 565 GLU GLU HIS ALA ASN THR PHE SER ALA PHE LEU ASP ARG SEQRES 25 B 565 LEU SER ASP THR VAL SER ALA ARG ASN THR SER GLY PHE SEQRES 26 B 565 ARG GLU GLN VAL ALA ALA TRP LEU GLU LYS LEU SER ALA SEQRES 27 B 565 SER ALA GLU LEU ARG GLN GLN SER PHE ALA VAL ALA ALA SEQRES 28 B 565 ASP ALA THR GLU SER CYS GLU ASP ARG VAL ALA LEU THR SEQRES 29 B 565 TRP ASN ASN LEU ARG LYS THR LEU LEU VAL HIS GLN ALA SEQRES 30 B 565 SER GLU GLY LEU PHE ASP ASN ASP THR GLY ALA LEU LEU SEQRES 31 B 565 SER LEU GLY ARG GLU MET PHE ARG LEU GLU ILE LEU GLU SEQRES 32 B 565 ASP ILE ALA ARG ASP LYS VAL ARG THR LEU HIS PHE VAL SEQRES 33 B 565 ASP GLU ILE GLU VAL TYR LEU ALA PHE GLN THR MET LEU SEQRES 34 B 565 ALA GLU LYS LEU GLN LEU SER THR ALA VAL LYS GLU MET SEQRES 35 B 565 ARG PHE TYR GLY VAL SER GLY VAL THR ALA ASN ASP LEU SEQRES 36 B 565 ARG THR ALA GLU ALA MET VAL ARG SER ARG GLU GLU ASN SEQRES 37 B 565 GLU PHE THR ASP TRP PHE SER LEU TRP GLY PRO TRP HIS SEQRES 38 B 565 ALA VAL LEU LYS ARG THR GLU ALA ASP ARG TRP ALA GLN SEQRES 39 B 565 ALA GLU GLU GLN LYS TYR GLU MET LEU GLU ASN GLU TYR SEQRES 40 B 565 SER GLN ARG VAL ALA ASP ARG LEU LYS ALA SER GLY LEU SEQRES 41 B 565 SER GLY ASP ALA ASP ALA GLU ARG GLU ALA GLY ALA GLN SEQRES 42 B 565 VAL MET ARG GLU THR GLU GLN GLN ILE TYR ARG GLN LEU SEQRES 43 B 565 THR ASP GLU VAL LEU ALA LEU ARG LEU SER GLU ASN GLY SEQRES 44 B 565 SER ARG LEU HIS HIS SER SEQRES 1 C 416 MET PHE SER VAL PHE GLU GLU ILE THR ARG ILE VAL VAL SEQRES 2 C 416 LYS GLU MET ASP ALA GLY GLY ASP MET ILE ALA VAL ARG SEQRES 3 C 416 SER LEU VAL ASP ALA ASP ARG PHE ARG CYS PHE HIS LEU SEQRES 4 C 416 VAL GLY GLU LYS ARG THR PHE PHE GLY CYS ARG HIS TYR SEQRES 5 C 416 THR THR GLY LEU THR LEU MET ASP ILE LEU ASP THR ASP SEQRES 6 C 416 GLY ASP LYS TRP LEU ASP GLU LEU ASP SER GLY LEU GLN SEQRES 7 C 416 GLY GLN LYS ALA GLU PHE GLN ILE LEU ASP ASN VAL ASP SEQRES 8 C 416 SER THR GLY GLU LEU ILE VAL ARG LEU PRO LYS GLU ILE SEQRES 9 C 416 THR ILE SER GLY SER PHE GLN GLY PHE HIS HIS GLN LYS SEQRES 10 C 416 ILE LYS ILE SER GLU ASN ARG ILE SER GLN GLN TYR LEU SEQRES 11 C 416 ALA THR LEU GLU ASN ARG LYS LEU LYS ARG GLU LEU PRO SEQRES 12 C 416 PHE SER PHE ARG SER ILE ASN THR ARG GLU ASN LEU TYR SEQRES 13 C 416 LEU VAL THR GLU THR LEU GLU THR VAL LYS GLU GLU THR SEQRES 14 C 416 LEU LYS SER ASP ARG GLN TYR LYS PHE TRP SER GLN ILE SEQRES 15 C 416 SER GLN GLY HIS LEU SER TYR LYS HIS LYS GLY GLN ARG SEQRES 16 C 416 GLU VAL THR ILE PRO PRO ASN ARG VAL LEU SER TYR ARG SEQRES 17 C 416 VAL LYS GLN LEU VAL PHE PRO ASN LYS GLU THR MET ASN SEQRES 18 C 416 ILE HIS PHE ARG GLY LYS THR LYS SER PHE PRO GLU GLU SEQRES 19 C 416 LYS ASP GLY ALA SER SER CYS LEU GLY LYS SER LEU GLY SEQRES 20 C 416 SER GLU ASP SER ARG ASN MET LYS GLU LYS LEU GLU ASP SEQRES 21 C 416 MET GLU SER VAL LEU LYS ASP LEU THR GLU GLU LYS ARG SEQRES 22 C 416 LYS ASP VAL LEU ASN SER LEU ALA LYS CYS LEU GLY LYS SEQRES 23 C 416 GLU ASP ILE ARG GLN ASP LEU GLU GLN ARG VAL SER GLU SEQRES 24 C 416 VAL LEU ILE SER GLY GLU LEU HIS MET GLU ASP PRO ASP SEQRES 25 C 416 LYS PRO LEU LEU SER SER LEU PHE ASN ALA ALA GLY VAL SEQRES 26 C 416 LEU VAL GLU ALA ARG ALA LYS ALA ILE LEU ASP PHE LEU SEQRES 27 C 416 ASP ALA LEU LEU GLU LEU SER GLU GLU GLN GLN PHE VAL SEQRES 28 C 416 ALA GLU ALA LEU GLU LYS GLY THR LEU PRO LEU LEU LYS SEQRES 29 C 416 ASP GLN VAL LYS SER VAL MET GLU GLN ASN TRP ASP GLU SEQRES 30 C 416 LEU ALA SER SER PRO PRO ASP MET ASP TYR ASP PRO GLU SEQRES 31 C 416 ALA ARG ILE LEU CYS ALA LEU TYR VAL VAL VAL SER ILE SEQRES 32 C 416 LEU LEU GLU LEU ALA GLU GLY PRO THR SER VAL SER SER HELIX 1 AA1 THR B 22 ASN B 37 1 16 HELIX 2 AA2 GLU B 43 GLN B 56 1 14 HELIX 3 AA3 PRO B 217 GLN B 222 5 6 HELIX 4 AA4 SER B 237 SER B 249 1 13 HELIX 5 AA5 VAL C 4 ALA C 18 1 15 HELIX 6 AA6 THR C 57 LEU C 62 1 6 HELIX 7 AA7 LYS C 68 LEU C 77 1 10 HELIX 8 AA8 SER C 126 ARG C 136 1 11 HELIX 9 AA9 PRO C 143 ASN C 150 1 8 HELIX 10 AB1 SER C 180 HIS C 186 1 7 HELIX 11 AB2 ASN C 248 ASP C 262 1 15 HELIX 12 AB3 THR C 264 LEU C 279 1 16 HELIX 13 AB4 LYS C 281 GLY C 299 1 19 HELIX 14 AB5 ASP C 307 PHE C 315 1 9 HELIX 15 AB6 VAL C 322 LEU C 339 1 18 HELIX 16 AB7 GLU C 342 GLY C 353 1 12 HELIX 17 AB8 THR C 354 ASN C 369 1 16 HELIX 18 AB9 ASP C 371 SER C 376 1 6 HELIX 19 AC1 ASP C 383 GLU C 404 1 22 SHEET 1 AA1 4 LEU B 82 ILE B 83 0 SHEET 2 AA1 4 GLU B 101 ASN B 103 1 O ASN B 103 N LEU B 82 SHEET 3 AA1 4 THR B 121 SER B 123 1 O SER B 123 N LEU B 102 SHEET 4 AA1 4 SER B 141 PHE B 143 1 O SER B 141 N LEU B 122 SHEET 1 AA2 4 PHE B 161 HIS B 163 0 SHEET 2 AA2 4 ILE B 181 CYS B 183 1 O ILE B 181 N LEU B 162 SHEET 3 AA2 4 LYS B 204 TYR B 207 1 O GLU B 205 N LEU B 182 SHEET 4 AA2 4 TYR B 227 ASN B 230 1 O ARG B 228 N LYS B 204 SHEET 1 AA3 5 MET C 22 ALA C 24 0 SHEET 2 AA3 5 SER C 206 LYS C 210 -1 O TYR C 207 N ILE C 23 SHEET 3 AA3 5 LEU C 157 THR C 164 -1 N GLU C 160 O ARG C 208 SHEET 4 AA3 5 ILE C 118 ARG C 124 -1 N SER C 121 O GLU C 163 SHEET 5 AA3 5 ALA C 82 ILE C 86 -1 N PHE C 84 O ILE C 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000