HEADER VIRUS 13-SEP-22 8EGS TITLE TAIL KNOB STRUCTURE OF STAPHYLOCOCCUS PHAGE ANDHRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOWER COLLAR PROTEIN; COMPND 3 CHAIN: J, I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MAJOR TAIL PROTEIN; COMPND 7 CHAIN: Y; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE ANDHRA; SOURCE 3 ORGANISM_TAXID: 1958907; SOURCE 4 GENE: ANDHRA_16; SOURCE 5 EXPRESSION_SYSTEM: STAPHYLOCOCCUS PHAGE ANDHRA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1958907; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE ANDHRA; SOURCE 9 ORGANISM_TAXID: 1958907; SOURCE 10 GENE: ANDHRA_12; SOURCE 11 EXPRESSION_SYSTEM: STAPHYLOCOCCUS PHAGE ANDHRA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1958907 KEYWDS PHAGE TAIL, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.L.KIZZIAH,N.C.HAWKINS,T.DOKLAND REVDAT 2 19-JUN-24 8EGS 1 REMARK REVDAT 1 14-DEC-22 8EGS 0 JRNL AUTH N.C.HAWKINS,J.L.KIZZIAH,A.HATOUM-ASLAN,T.DOKLAND JRNL TITL STRUCTURE AND HOST SPECIFICITY OF STAPHYLOCOCCUS EPIDERMIDIS JRNL TITL 2 BACTERIOPHAGE ANDHRA. JRNL REF SCI ADV V. 8 E0459 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36449623 JRNL DOI 10.1126/SCIADV.ADE0459 REMARK 2 REMARK 2 RESOLUTION. 3.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.920 REMARK 3 NUMBER OF PARTICLES : 101037 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8EGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268127. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STAPHYLOCOCCUS PHAGE ANDHRA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3900.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C6). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, I, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 348.30369 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -93.32769 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 603.27969 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 161.64831 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 509.95200 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 509.95201 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -0.500000 0.866025 0.000000 161.64830 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 603.27970 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -93.32770 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 348.30369 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET J 39 REMARK 465 GLN J 40 REMARK 465 LYS J 41 REMARK 465 MET J 42 REMARK 465 LEU J 43 REMARK 465 TYR J 44 REMARK 465 PHE J 45 REMARK 465 ASP J 46 REMARK 465 ASP J 47 REMARK 465 ASP J 48 REMARK 465 VAL J 49 REMARK 465 LYS J 50 REMARK 465 GLN J 51 REMARK 465 ILE J 52 REMARK 465 VAL J 53 REMARK 465 ASP J 54 REMARK 465 HIS J 55 REMARK 465 MET J 56 REMARK 465 PHE J 57 REMARK 465 PHE J 58 REMARK 465 LYS J 59 REMARK 465 GLY J 60 REMARK 465 PHE J 61 REMARK 465 MET J 62 REMARK 465 PHE J 63 REMARK 465 ASN J 64 REMARK 465 ASP J 65 REMARK 465 GLU J 66 REMARK 465 ARG J 67 REMARK 465 ILE J 68 REMARK 465 ASP J 69 REMARK 465 ARG J 70 REMARK 465 TYR J 71 REMARK 465 PHE J 72 REMARK 465 LYS J 73 REMARK 465 GLU J 74 REMARK 465 SER J 75 REMARK 465 PHE J 76 REMARK 465 THR J 77 REMARK 465 LEU J 78 REMARK 465 ARG J 79 REMARK 465 PHE J 80 REMARK 465 LEU J 81 REMARK 465 TYR J 82 REMARK 465 ARG J 83 REMARK 465 GLU J 84 REMARK 465 ILE J 85 REMARK 465 GLY J 86 REMARK 465 ARG J 87 REMARK 465 GLN J 88 REMARK 465 THR J 89 REMARK 465 VAL J 90 REMARK 465 GLU J 91 REMARK 465 SER J 92 REMARK 465 PHE J 93 REMARK 465 ALA J 94 REMARK 465 SER J 95 REMARK 465 GLN J 96 REMARK 465 VAL J 97 REMARK 465 LEU J 98 REMARK 465 TYR J 99 REMARK 465 ILE J 100 REMARK 465 THR J 101 REMARK 465 MET J 102 REMARK 465 THR J 103 REMARK 465 HIS J 104 REMARK 465 GLU J 105 REMARK 465 ASP J 106 REMARK 465 TYR J 107 REMARK 465 ILE J 108 REMARK 465 TYR J 109 REMARK 465 ARG J 110 REMARK 465 VAL J 111 REMARK 465 TYR J 112 REMARK 465 GLY J 113 REMARK 465 SER J 114 REMARK 465 ASP J 115 REMARK 465 MET J 116 REMARK 465 TYR J 117 REMARK 465 LYS J 118 REMARK 465 TYR J 119 REMARK 465 ILE J 120 REMARK 465 GLU J 121 REMARK 465 GLN J 122 REMARK 465 VAL J 123 REMARK 465 THR J 124 REMARK 465 ASP J 125 REMARK 465 THR J 126 REMARK 465 GLN J 127 REMARK 465 SER J 128 REMARK 465 GLN J 129 REMARK 465 ASP J 130 REMARK 465 LEU J 131 REMARK 465 GLY J 132 REMARK 465 LYS J 133 REMARK 465 ALA J 134 REMARK 465 ILE J 135 REMARK 465 GLU J 136 REMARK 465 ASN J 137 REMARK 465 ALA J 138 REMARK 465 ILE J 139 REMARK 465 GLU J 140 REMARK 465 GLN J 141 REMARK 465 GLY J 142 REMARK 465 GLN J 143 REMARK 465 THR J 144 REMARK 465 LYS J 145 REMARK 465 ASP J 146 REMARK 465 ARG J 147 REMARK 465 GLN J 148 REMARK 465 GLN J 149 REMARK 465 ASP J 150 REMARK 465 LYS J 151 REMARK 465 GLY J 152 REMARK 465 HIS J 153 REMARK 465 GLU J 154 REMARK 465 GLU J 155 REMARK 465 TYR J 156 REMARK 465 LYS J 157 REMARK 465 ASP J 158 REMARK 465 TYR J 159 REMARK 465 GLU J 160 REMARK 465 ASP J 161 REMARK 465 THR J 162 REMARK 465 ILE J 163 REMARK 465 THR J 164 REMARK 465 LYS J 165 REMARK 465 SER J 166 REMARK 465 PHE J 167 REMARK 465 ASP J 168 REMARK 465 ASP J 169 REMARK 465 ASN J 170 REMARK 465 ARG J 171 REMARK 465 THR J 172 REMARK 465 ALA J 173 REMARK 465 GLU J 174 REMARK 465 ASP J 195 REMARK 465 THR J 196 REMARK 465 ASN J 197 REMARK 465 THR J 198 REMARK 465 ILE J 199 REMARK 465 SER J 200 REMARK 465 ARG J 201 REMARK 465 ASP J 202 REMARK 465 LYS J 203 REMARK 465 ASN J 204 REMARK 465 THR J 205 REMARK 465 SER J 206 REMARK 465 GLU J 207 REMARK 465 THR J 208 REMARK 465 VAL J 209 REMARK 465 SER J 210 REMARK 465 GLU J 211 REMARK 465 LYS J 212 REMARK 465 THR J 213 REMARK 465 GLY J 214 REMARK 465 THR J 215 REMARK 465 LYS J 216 REMARK 465 ASP J 217 REMARK 465 ASN J 218 REMARK 465 THR J 219 REMARK 465 PHE J 220 REMARK 465 ASP J 221 REMARK 465 SER J 222 REMARK 465 LEU J 223 REMARK 465 ARG J 224 REMARK 465 ASN J 225 REMARK 465 GLY J 226 REMARK 465 GLU J 227 REMARK 465 SER J 228 REMARK 465 ASP J 229 REMARK 465 THR J 230 REMARK 465 LYS J 231 REMARK 465 ARG J 232 REMARK 465 ASN J 233 REMARK 465 THR J 234 REMARK 465 GLN J 235 REMARK 465 SER J 236 REMARK 465 GLN J 237 REMARK 465 ASN J 238 REMARK 465 GLU J 239 REMARK 465 MET J 240 REMARK 465 ASN J 241 REMARK 465 ARG J 242 REMARK 465 THR J 243 REMARK 465 GLY J 244 REMARK 465 LEU J 245 REMARK 465 THR J 246 REMARK 465 LYS J 247 REMARK 465 GLN J 248 REMARK 465 TYR J 249 REMARK 465 LEU J 250 REMARK 465 ILE J 251 REMARK 465 ASP J 252 REMARK 465 ASN J 253 REMARK 465 LEU J 254 REMARK 465 GLN J 255 REMARK 465 LYS J 256 REMARK 465 LEU J 257 REMARK 465 TYR J 258 REMARK 465 SER J 259 REMARK 465 MET J 260 REMARK 465 ARG J 261 REMARK 465 ASP J 262 REMARK 465 THR J 263 REMARK 465 ILE J 264 REMARK 465 PHE J 265 REMARK 465 LYS J 266 REMARK 465 THR J 267 REMARK 465 TYR J 268 REMARK 465 ASP J 269 REMARK 465 LYS J 270 REMARK 465 GLU J 271 REMARK 465 CYS J 272 REMARK 465 PHE J 273 REMARK 465 LEU J 274 REMARK 465 HIS J 275 REMARK 465 ILE J 276 REMARK 465 TRP J 277 REMARK 465 MET I 39 REMARK 465 GLN I 40 REMARK 465 LYS I 41 REMARK 465 MET I 42 REMARK 465 LEU I 43 REMARK 465 TYR I 44 REMARK 465 PHE I 45 REMARK 465 ASP I 46 REMARK 465 ASP I 47 REMARK 465 ASP I 48 REMARK 465 VAL I 49 REMARK 465 LYS I 50 REMARK 465 GLN I 51 REMARK 465 ILE I 52 REMARK 465 VAL I 53 REMARK 465 ASP I 54 REMARK 465 HIS I 55 REMARK 465 MET I 56 REMARK 465 PHE I 57 REMARK 465 PHE I 58 REMARK 465 LYS I 59 REMARK 465 GLY I 60 REMARK 465 PHE I 61 REMARK 465 MET I 62 REMARK 465 PHE I 63 REMARK 465 ASN I 64 REMARK 465 ASP I 65 REMARK 465 GLU I 66 REMARK 465 ARG I 67 REMARK 465 ILE I 68 REMARK 465 ASP I 69 REMARK 465 ARG I 70 REMARK 465 TYR I 71 REMARK 465 PHE I 72 REMARK 465 LYS I 73 REMARK 465 GLU I 74 REMARK 465 SER I 75 REMARK 465 PHE I 76 REMARK 465 THR I 77 REMARK 465 LEU I 78 REMARK 465 ARG I 79 REMARK 465 PHE I 80 REMARK 465 LEU I 81 REMARK 465 TYR I 82 REMARK 465 ARG I 83 REMARK 465 GLU I 84 REMARK 465 ILE I 85 REMARK 465 GLY I 86 REMARK 465 ARG I 87 REMARK 465 GLN I 88 REMARK 465 THR I 89 REMARK 465 VAL I 90 REMARK 465 GLU I 91 REMARK 465 SER I 92 REMARK 465 PHE I 93 REMARK 465 ALA I 94 REMARK 465 SER I 95 REMARK 465 GLN I 96 REMARK 465 VAL I 97 REMARK 465 LEU I 98 REMARK 465 TYR I 99 REMARK 465 ILE I 100 REMARK 465 THR I 101 REMARK 465 MET I 102 REMARK 465 THR I 103 REMARK 465 HIS I 104 REMARK 465 GLU I 105 REMARK 465 ASP I 106 REMARK 465 TYR I 107 REMARK 465 ILE I 108 REMARK 465 TYR I 109 REMARK 465 ARG I 110 REMARK 465 VAL I 111 REMARK 465 TYR I 112 REMARK 465 GLY I 113 REMARK 465 SER I 114 REMARK 465 ASP I 115 REMARK 465 MET I 116 REMARK 465 TYR I 117 REMARK 465 LYS I 118 REMARK 465 TYR I 119 REMARK 465 ILE I 120 REMARK 465 GLU I 121 REMARK 465 GLN I 122 REMARK 465 VAL I 123 REMARK 465 THR I 124 REMARK 465 ASP I 125 REMARK 465 THR I 126 REMARK 465 GLN I 127 REMARK 465 SER I 128 REMARK 465 GLN I 129 REMARK 465 ASP I 130 REMARK 465 LEU I 131 REMARK 465 GLY I 132 REMARK 465 LYS I 133 REMARK 465 ALA I 134 REMARK 465 ILE I 135 REMARK 465 GLU I 136 REMARK 465 ASN I 137 REMARK 465 ALA I 138 REMARK 465 ILE I 139 REMARK 465 GLU I 140 REMARK 465 GLN I 141 REMARK 465 GLY I 142 REMARK 465 GLN I 143 REMARK 465 THR I 144 REMARK 465 LYS I 145 REMARK 465 ASP I 146 REMARK 465 ARG I 147 REMARK 465 GLN I 148 REMARK 465 GLN I 149 REMARK 465 ASP I 150 REMARK 465 LYS I 151 REMARK 465 GLY I 152 REMARK 465 HIS I 153 REMARK 465 GLU I 154 REMARK 465 GLU I 155 REMARK 465 TYR I 156 REMARK 465 LYS I 157 REMARK 465 ASP I 158 REMARK 465 TYR I 159 REMARK 465 GLU I 160 REMARK 465 ASP I 161 REMARK 465 THR I 162 REMARK 465 ILE I 163 REMARK 465 THR I 164 REMARK 465 LYS I 165 REMARK 465 SER I 166 REMARK 465 PHE I 167 REMARK 465 ASP I 168 REMARK 465 ASP I 169 REMARK 465 ASN I 170 REMARK 465 ARG I 171 REMARK 465 THR I 172 REMARK 465 ALA I 173 REMARK 465 GLU I 174 REMARK 465 ASP I 195 REMARK 465 THR I 196 REMARK 465 ASN I 197 REMARK 465 THR I 198 REMARK 465 ILE I 199 REMARK 465 SER I 200 REMARK 465 ARG I 201 REMARK 465 ASP I 202 REMARK 465 LYS I 203 REMARK 465 ASN I 204 REMARK 465 THR I 205 REMARK 465 SER I 206 REMARK 465 GLU I 207 REMARK 465 THR I 208 REMARK 465 VAL I 209 REMARK 465 SER I 210 REMARK 465 GLU I 211 REMARK 465 LYS I 212 REMARK 465 THR I 213 REMARK 465 GLY I 214 REMARK 465 THR I 215 REMARK 465 LYS I 216 REMARK 465 ASP I 217 REMARK 465 ASN I 218 REMARK 465 THR I 219 REMARK 465 PHE I 220 REMARK 465 ASP I 221 REMARK 465 SER I 222 REMARK 465 LEU I 223 REMARK 465 ARG I 224 REMARK 465 ASN I 225 REMARK 465 GLY I 226 REMARK 465 GLU I 227 REMARK 465 SER I 228 REMARK 465 ASP I 229 REMARK 465 THR I 230 REMARK 465 LYS I 231 REMARK 465 ARG I 232 REMARK 465 ASN I 233 REMARK 465 THR I 234 REMARK 465 GLN I 235 REMARK 465 SER I 236 REMARK 465 GLN I 237 REMARK 465 ASN I 238 REMARK 465 GLU I 239 REMARK 465 MET I 240 REMARK 465 ASN I 241 REMARK 465 ARG I 242 REMARK 465 THR I 243 REMARK 465 GLY I 244 REMARK 465 LEU I 245 REMARK 465 THR I 246 REMARK 465 LYS I 247 REMARK 465 GLN I 248 REMARK 465 TYR I 249 REMARK 465 LEU I 250 REMARK 465 ILE I 251 REMARK 465 ASP I 252 REMARK 465 ASN I 253 REMARK 465 LEU I 254 REMARK 465 GLN I 255 REMARK 465 LYS I 256 REMARK 465 LEU I 257 REMARK 465 TYR I 258 REMARK 465 SER I 259 REMARK 465 MET I 260 REMARK 465 ARG I 261 REMARK 465 ASP I 262 REMARK 465 THR I 263 REMARK 465 ILE I 264 REMARK 465 PHE I 265 REMARK 465 LYS I 266 REMARK 465 THR I 267 REMARK 465 TYR I 268 REMARK 465 ASP I 269 REMARK 465 LYS I 270 REMARK 465 GLU I 271 REMARK 465 CYS I 272 REMARK 465 PHE I 273 REMARK 465 LEU I 274 REMARK 465 HIS I 275 REMARK 465 ILE I 276 REMARK 465 TRP I 277 REMARK 465 MET Y 1 REMARK 465 ALA Y 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER Y 178 OD1 ASN Y 234 2.02 REMARK 500 OG SER Y 196 OD1 ASN Y 209 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO I 178 CA - N - CD ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE Y 42 173.15 70.51 REMARK 500 ASN Y 75 -51.49 -120.05 REMARK 500 ASN Y 192 119.10 -160.99 REMARK 500 SER Y 195 -141.61 66.73 REMARK 500 TYR Y 203 -0.07 68.09 REMARK 500 ASN Y 294 74.97 -101.59 REMARK 500 ASN Y 358 1.07 80.98 REMARK 500 LEU Y 377 -5.42 78.48 REMARK 500 SER Y 385 65.91 60.61 REMARK 500 VAL Y 534 -62.68 -107.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28129 RELATED DB: EMDB REMARK 900 TAIL KNOB STRUCTURE OF STAPHYLOCOCCUS PHAGE ANDHRA REMARK 900 RELATED ID: EMD-28128 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-28130 RELATED DB: EMDB REMARK 900 RELATED ID: 8EGR RELATED DB: PDB REMARK 900 RELATED ID: 8EGT RELATED DB: PDB DBREF1 8EGS J 39 277 UNP A0A1S6L1H8_9CAUD DBREF2 8EGS J A0A1S6L1H8 1 239 DBREF1 8EGS I 39 277 UNP A0A1S6L1H8_9CAUD DBREF2 8EGS I A0A1S6L1H8 1 239 DBREF1 8EGS Y 1 588 UNP A0A1S6L1I1_9CAUD DBREF2 8EGS Y A0A1S6L1I1 1 588 SEQRES 1 J 239 MET GLN LYS MET LEU TYR PHE ASP ASP ASP VAL LYS GLN SEQRES 2 J 239 ILE VAL ASP HIS MET PHE PHE LYS GLY PHE MET PHE ASN SEQRES 3 J 239 ASP GLU ARG ILE ASP ARG TYR PHE LYS GLU SER PHE THR SEQRES 4 J 239 LEU ARG PHE LEU TYR ARG GLU ILE GLY ARG GLN THR VAL SEQRES 5 J 239 GLU SER PHE ALA SER GLN VAL LEU TYR ILE THR MET THR SEQRES 6 J 239 HIS GLU ASP TYR ILE TYR ARG VAL TYR GLY SER ASP MET SEQRES 7 J 239 TYR LYS TYR ILE GLU GLN VAL THR ASP THR GLN SER GLN SEQRES 8 J 239 ASP LEU GLY LYS ALA ILE GLU ASN ALA ILE GLU GLN GLY SEQRES 9 J 239 GLN THR LYS ASP ARG GLN GLN ASP LYS GLY HIS GLU GLU SEQRES 10 J 239 TYR LYS ASP TYR GLU ASP THR ILE THR LYS SER PHE ASP SEQRES 11 J 239 ASP ASN ARG THR ALA GLU SER THR LEU PRO GLN SER LYS SEQRES 12 J 239 VAL ASN ILE ASP VAL ASP ASN THR VAL LEU ASP TYR ALA SEQRES 13 J 239 ASP THR ASN THR ILE SER ARG ASP LYS ASN THR SER GLU SEQRES 14 J 239 THR VAL SER GLU LYS THR GLY THR LYS ASP ASN THR PHE SEQRES 15 J 239 ASP SER LEU ARG ASN GLY GLU SER ASP THR LYS ARG ASN SEQRES 16 J 239 THR GLN SER GLN ASN GLU MET ASN ARG THR GLY LEU THR SEQRES 17 J 239 LYS GLN TYR LEU ILE ASP ASN LEU GLN LYS LEU TYR SER SEQRES 18 J 239 MET ARG ASP THR ILE PHE LYS THR TYR ASP LYS GLU CYS SEQRES 19 J 239 PHE LEU HIS ILE TRP SEQRES 1 I 239 MET GLN LYS MET LEU TYR PHE ASP ASP ASP VAL LYS GLN SEQRES 2 I 239 ILE VAL ASP HIS MET PHE PHE LYS GLY PHE MET PHE ASN SEQRES 3 I 239 ASP GLU ARG ILE ASP ARG TYR PHE LYS GLU SER PHE THR SEQRES 4 I 239 LEU ARG PHE LEU TYR ARG GLU ILE GLY ARG GLN THR VAL SEQRES 5 I 239 GLU SER PHE ALA SER GLN VAL LEU TYR ILE THR MET THR SEQRES 6 I 239 HIS GLU ASP TYR ILE TYR ARG VAL TYR GLY SER ASP MET SEQRES 7 I 239 TYR LYS TYR ILE GLU GLN VAL THR ASP THR GLN SER GLN SEQRES 8 I 239 ASP LEU GLY LYS ALA ILE GLU ASN ALA ILE GLU GLN GLY SEQRES 9 I 239 GLN THR LYS ASP ARG GLN GLN ASP LYS GLY HIS GLU GLU SEQRES 10 I 239 TYR LYS ASP TYR GLU ASP THR ILE THR LYS SER PHE ASP SEQRES 11 I 239 ASP ASN ARG THR ALA GLU SER THR LEU PRO GLN SER LYS SEQRES 12 I 239 VAL ASN ILE ASP VAL ASP ASN THR VAL LEU ASP TYR ALA SEQRES 13 I 239 ASP THR ASN THR ILE SER ARG ASP LYS ASN THR SER GLU SEQRES 14 I 239 THR VAL SER GLU LYS THR GLY THR LYS ASP ASN THR PHE SEQRES 15 I 239 ASP SER LEU ARG ASN GLY GLU SER ASP THR LYS ARG ASN SEQRES 16 I 239 THR GLN SER GLN ASN GLU MET ASN ARG THR GLY LEU THR SEQRES 17 I 239 LYS GLN TYR LEU ILE ASP ASN LEU GLN LYS LEU TYR SER SEQRES 18 I 239 MET ARG ASP THR ILE PHE LYS THR TYR ASP LYS GLU CYS SEQRES 19 I 239 PHE LEU HIS ILE TRP SEQRES 1 Y 588 MET ALA ASP ARG LYS LEU THR HIS PHE LYS PHE PHE TYR SEQRES 2 Y 588 ASN THR PRO LEU THR ASP TYR GLN ASN THR ILE HIS PHE SEQRES 3 Y 588 SER SER ASN ASN GLU ARG ASP ASN TYR PHE LEU ASN GLU SEQRES 4 Y 588 ASN HIS PHE ASN ALA ILE ASP TYR LYS ASN ILE PRO PHE SEQRES 5 Y 588 ASN PHE ILE ARG ASP ARG ASN MET VAL ASN LEU GLU GLN SEQRES 6 Y 588 MET SER TRP GLN ASP ALA GLN GLY ILE ASN TYR CYS THR SEQRES 7 Y 588 PHE LYS SER ASP PHE GLU ASN ARG ARG TYR TYR ALA PHE SEQRES 8 Y 588 VAL ASN GLN ILE GLU TYR VAL ASN ASP HIS VAL THR ARG SEQRES 9 Y 588 MET TYR LEU VAL ILE ASP THR VAL MET THR TYR THR GLN SEQRES 10 Y 588 GLY ASN VAL LEU SER THR VAL GLN ASN ALA PHE VAL GLU SEQRES 11 Y 588 ARG GLN HIS LEU PRO ARG ASP VAL TYR ASN TYR LEU LEU SEQRES 12 Y 588 PRO SER LEU ARG ASN ASN ASP ASP VAL ILE LYS ALA SER SEQRES 13 Y 588 ASN LYS TYR TYR LEU ASN ASN TYR LEU GLU GLN PHE GLY SEQRES 14 Y 588 GLY ASN LEU VAL LEU PHE GLN SER SER ALA ASP LEU SER SEQRES 15 Y 588 LYS LYS PHE GLY THR LYS LYS GLU PRO ASN LEU GLU SER SEQRES 16 Y 588 SER LYS GLY ILE THR TYR ASP TYR ILE THR SER PRO VAL SEQRES 17 Y 588 ASN LEU TYR VAL MET ASN ARG GLU ASP PHE ASN ASN PHE SEQRES 18 Y 588 MET ASP LYS MET SER LYS TYR PRO TRP ILE THR GLN ASN SEQRES 19 Y 588 PHE GLN LYS ILE ILE LEU ILE PRO ALA THR PHE ILE ASN SEQRES 20 Y 588 LYS ASP ASP LEU GLU ALA VAL LYS THR GLN GLU ASP ILE SEQRES 21 Y 588 LYS GLY LEU MET THR LEU LYS ASN ASP LYS LEU SER ASN SEQRES 22 Y 588 GLU TRP GLU LEU LYS GLU LEU ARG VAL PRO PHE GLU ARG SEQRES 23 Y 588 LEU GLN TYR MET LEU ASN SER ASN GLN ASP GLU LEU LYS SEQRES 24 Y 588 HIS LEU VAL ARG ASN GLU TYR LEU THR ILE GLU ILE TYR SEQRES 25 Y 588 SER TRP ASN GLY ASP SER LEU LEU LEU ASP ALA GLY LYS SEQRES 26 Y 588 ILE THR GLU ARG THR GLY VAL LYS LEU LYS THR LYS SER SEQRES 27 Y 588 ILE ILE GLY TYR HIS ASN GLU VAL ARG ILE TYR PRO VAL SEQRES 28 Y 588 ASP TYR ASN SER ALA PRO ASN GLU LYS PRO ILE LYS ALA SEQRES 29 Y 588 SER ASP ASN SER ILE LEU ILE ASP THR GLY SER PHE LEU SEQRES 30 Y 588 ASN THR ALA ILE THR PHE ASP SER PHE ALA GLU VAL PRO SEQRES 31 Y 588 ILE LEU ILE ASP ASN GLY LEU LEU ALA GLN SER GLN GLN SEQRES 32 Y 588 ALA ASN LYS GLN LYS ASN ALA GLN SER ASN LEU ILE SER SEQRES 33 Y 588 ASN ARG ILE ASN ASN VAL VAL ASN GLY ASN ASP LEU LYS SEQRES 34 Y 588 SER ARG PHE TYR ASP ALA VAL SER ILE GLY SER ASN LEU SEQRES 35 Y 588 SER PRO THR ALA LEU PHE SER LYS PHE ASN ASP GLU TYR SEQRES 36 Y 588 ASN TYR TYR LYS GLU LEU ARG ALA GLU TYR LYS ASP LEU SEQRES 37 Y 588 ALA LEU GLN PRO PRO THR VAL THR SER SER GLN MET GLY SEQRES 38 Y 588 ASN ALA PHE GLN ILE ALA ASN SER ILE ASN GLY LEU THR SEQRES 39 Y 588 MET LYS ILE GLY VAL PRO ALA PRO PHE ASP MET ASP ASN SEQRES 40 Y 588 ILE GLN ARG TYR TYR PHE MET LEU GLY PHE GLU THR ASN SEQRES 41 Y 588 ASP GLN ALA GLY THR PRO PHE PRO ILE ASP SER TRP THR SEQRES 42 Y 588 VAL CYS ASN TYR LEU ARG MET ARG GLY THR TYR THR ILE SEQRES 43 Y 588 ASP GLY ILE ASP PRO MET LEU LEU GLU GLN LEU LYS VAL SEQRES 44 Y 588 LEU LEU GLU THR GLY VAL ARG PHE TRP HIS ASN ASP GLY SEQRES 45 Y 588 THR ASN ASN PRO MET ALA GLN ASN VAL PHE LYS ASN LYS SEQRES 46 Y 588 PHE ARG LYS HELIX 1 AA1 SER Y 28 ASN Y 38 1 11 HELIX 2 AA2 SER Y 67 GLN Y 72 1 6 HELIX 3 AA3 ASP Y 110 THR Y 116 1 7 HELIX 4 AA4 ASN Y 119 VAL Y 124 5 6 HELIX 5 AA5 PRO Y 135 ASN Y 148 1 14 HELIX 6 AA6 THR Y 200 ILE Y 204 5 5 HELIX 7 AA7 ASN Y 214 SER Y 226 1 13 HELIX 8 AA8 TYR Y 228 ASN Y 234 1 7 HELIX 9 AA9 PRO Y 283 LEU Y 291 1 9 HELIX 10 AB1 GLN Y 295 VAL Y 302 5 8 HELIX 11 AB2 LEU Y 398 LYS Y 406 1 9 HELIX 12 AB3 ASN Y 417 ASN Y 420 5 4 HELIX 13 AB4 GLY Y 425 ILE Y 438 1 14 HELIX 14 AB5 THR Y 445 LYS Y 450 1 6 HELIX 15 AB6 GLU Y 454 ARG Y 462 1 9 HELIX 16 AB7 ASN Y 482 ASN Y 488 1 7 HELIX 17 AB8 ALA Y 501 GLY Y 516 1 16 HELIX 18 AB9 ASP Y 550 GLY Y 564 1 15 HELIX 19 AC1 ASN Y 580 ASN Y 584 5 5 SHEET 1 AA1 5 ALA Y 44 ASP Y 46 0 SHEET 2 AA1 5 THR Y 7 TYR Y 13 -1 N PHE Y 11 O ILE Y 45 SHEET 3 AA1 5 ILE Y 74 SER Y 81 -1 O LYS Y 80 N HIS Y 8 SHEET 4 AA1 5 TYR Y 88 PHE Y 91 -1 O TYR Y 88 N PHE Y 79 SHEET 5 AA1 5 VAL Y 108 ILE Y 109 -1 O VAL Y 108 N PHE Y 91 SHEET 1 AA2 4 ASN Y 22 HIS Y 25 0 SHEET 2 AA2 4 VAL Y 565 HIS Y 569 1 O TRP Y 568 N THR Y 23 SHEET 3 AA2 4 CYS Y 535 ARG Y 541 -1 N LEU Y 538 O VAL Y 565 SHEET 4 AA2 4 PHE Y 128 GLU Y 130 -1 N PHE Y 128 O ARG Y 541 SHEET 1 AA3 3 VAL Y 61 LEU Y 63 0 SHEET 2 AA3 3 VAL Y 102 MET Y 105 -1 O MET Y 105 N VAL Y 61 SHEET 3 AA3 3 ILE Y 95 ASN Y 99 -1 N GLU Y 96 O ARG Y 104 SHEET 1 AA4 3 LYS Y 158 LEU Y 165 0 SHEET 2 AA4 3 THR Y 494 PRO Y 500 -1 O ILE Y 497 N LEU Y 161 SHEET 3 AA4 3 THR Y 308 TYR Y 312 -1 N TYR Y 312 O THR Y 494 SHEET 1 AA5 3 PHE Y 235 LYS Y 237 0 SHEET 2 AA5 3 ASN Y 171 SER Y 177 -1 N GLN Y 176 O LYS Y 237 SHEET 3 AA5 3 LEU Y 240 PRO Y 242 -1 O ILE Y 241 N LEU Y 172 SHEET 1 AA6 5 PHE Y 235 LYS Y 237 0 SHEET 2 AA6 5 ASN Y 171 SER Y 177 -1 N GLN Y 176 O LYS Y 237 SHEET 3 AA6 5 ASN Y 209 MET Y 213 -1 O ASN Y 209 N SER Y 177 SHEET 4 AA6 5 MET Y 264 LEU Y 266 -1 O MET Y 264 N VAL Y 212 SHEET 5 AA6 5 LEU Y 251 ALA Y 253 -1 N GLU Y 252 O THR Y 265 SHEET 1 AA7 4 ARG Y 281 VAL Y 282 0 SHEET 2 AA7 4 VAL Y 332 ILE Y 339 -1 O VAL Y 332 N VAL Y 282 SHEET 3 AA7 4 GLU Y 345 PRO Y 350 -1 O TYR Y 349 N LYS Y 335 SHEET 4 AA7 4 ILE Y 381 ASP Y 384 -1 O PHE Y 383 N VAL Y 346 SHEET 1 AA8 2 ASN Y 413 ILE Y 415 0 SHEET 2 AA8 2 TYR Y 465 ASP Y 467 -1 O LYS Y 466 N LEU Y 414 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000