HEADER BIOSYNTHETIC PROTEIN 13-SEP-22 8EH1
TITLE ENGINEERED TYROSINE SYNTHASE (TMTYRS1) DERIVED FROM T. MARITIMA TRPB
TITLE 2 WITH SER BOUND AS THE AMINO-ACRYLATE INTERMEDIATE AND COMPLEXED WITH
TITLE 3 4-HYDROXYQUINOLINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ENGINEERED TYROSINE SYNTHASE (TMTYRS1);
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 4.2.1.20;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: ENGINEERED FROM TRYPTOPHAN SYNTHASE BETA CHAIN 1
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA;
SOURCE 3 ORGANISM_TAXID: 2336;
SOURCE 4 GENE: TRPB1, TRPB, TM_0138;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TYROSINE SYNTHASE, ENGINEERED ENZYME, NONCANONICAL AMINO ACID
KEYWDS 2 SYNTHASE, BIOSYNTHETIC PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR N.J.PORTER,P.J.ALMHJELL,F.H.ARNOLD
REVDAT 3 14-AUG-24 8EH1 1 JRNL
REVDAT 2 03-JUL-24 8EH1 1 JRNL
REVDAT 1 04-OCT-23 8EH1 0
JRNL AUTH P.J.ALMHJELL,K.E.JOHNSTON,N.J.PORTER,J.L.KENNEMUR,
JRNL AUTH 2 V.C.BHETHANABOTLA,J.DUCHARME,F.H.ARNOLD
JRNL TITL THE BETA-SUBUNIT OF TRYPTOPHAN SYNTHASE IS A LATENT TYROSINE
JRNL TITL 2 SYNTHASE.
JRNL REF NAT.CHEM.BIOL. V. 20 1086 2024
JRNL REFN ESSN 1552-4469
JRNL PMID 38744987
JRNL DOI 10.1038/S41589-024-01619-Z
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD,
REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV,
REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS
REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH
REMARK 1 TITL 2 PHENIX.REFINE.
REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012
REMARK 1 REF 2 CRYSTALLOGR
REMARK 1 REFN ESSN 1399-0047
REMARK 1 PMID 22505256
REMARK 1 DOI 10.1107/S0907444912001308
REMARK 1 REFERENCE 2
REMARK 1 AUTH A.J.MCCOY,R.W.GROSSE-KUNSTLEVE,P.D.ADAMS,M.D.WINN,
REMARK 1 AUTH 2 L.C.STORONI,R.J.READ
REMARK 1 TITL PHASER CRYSTALLOGRAPHIC SOFTWARE.
REMARK 1 REF J APPL CRYSTALLOGR V. 40 658 2007
REMARK 1 REFN ISSN 0021-8898
REMARK 1 PMID 19461840
REMARK 1 DOI 10.1107/S0021889807021206
REMARK 1 REFERENCE 3
REMARK 1 AUTH P.EMSLEY,B.LOHKAMP,W.G.SCOTT,K.COWTAN
REMARK 1 TITL FEATURES AND DEVELOPMENT OF COOT.
REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 66 486 2010
REMARK 1 REF 2 CRYSTALLOGR
REMARK 1 REFN ESSN 1399-0047
REMARK 1 PMID 20383002
REMARK 1 DOI 10.1107/S0907444910007493
REMARK 1 REFERENCE 4
REMARK 1 AUTH W.KABSCH
REMARK 1 TITL XDS.
REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 66 125 2010
REMARK 1 REF 2 CRYSTALLOGR
REMARK 1 REFN ESSN 1399-0047
REMARK 1 PMID 20124692
REMARK 1 DOI 10.1107/S0907444909047337
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1_4487
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 75899
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.188
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 3846
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 38.8600 - 5.9900 0.98 2742 135 0.1715 0.1846
REMARK 3 2 5.9900 - 4.7600 1.00 2686 166 0.1642 0.1787
REMARK 3 3 4.7600 - 4.1600 1.00 2708 145 0.1444 0.1762
REMARK 3 4 4.1600 - 3.7800 0.99 2659 130 0.1657 0.1743
REMARK 3 5 3.7800 - 3.5100 1.00 2697 126 0.1698 0.2139
REMARK 3 6 3.5100 - 3.3000 1.00 2699 120 0.1922 0.2468
REMARK 3 7 3.3000 - 3.1400 1.00 2695 146 0.2016 0.2140
REMARK 3 8 3.1400 - 3.0000 1.00 2656 143 0.2069 0.2782
REMARK 3 9 3.0000 - 2.8800 1.00 2675 146 0.1997 0.2299
REMARK 3 10 2.8800 - 2.7800 0.99 2691 136 0.2082 0.2644
REMARK 3 11 2.7800 - 2.7000 0.99 2616 143 0.2083 0.2301
REMARK 3 12 2.7000 - 2.6200 1.00 2686 135 0.2029 0.2420
REMARK 3 13 2.6200 - 2.5500 1.00 2659 153 0.1985 0.2202
REMARK 3 14 2.5500 - 2.4900 1.00 2655 147 0.2051 0.2344
REMARK 3 15 2.4900 - 2.4300 1.00 2639 154 0.2061 0.2075
REMARK 3 16 2.4300 - 2.3800 1.00 2687 137 0.2108 0.2753
REMARK 3 17 2.3800 - 2.3300 1.00 2642 141 0.2176 0.2610
REMARK 3 18 2.3300 - 2.2900 1.00 2638 147 0.2159 0.2646
REMARK 3 19 2.2900 - 2.2500 1.00 2669 164 0.2161 0.2498
REMARK 3 20 2.2500 - 2.2100 1.00 2644 160 0.2189 0.2737
REMARK 3 21 2.2100 - 2.1700 1.00 2628 159 0.2393 0.2696
REMARK 3 22 2.1700 - 2.1400 0.99 2665 116 0.2445 0.3247
REMARK 3 23 2.1400 - 2.1100 1.00 2670 152 0.2442 0.2894
REMARK 3 24 2.1100 - 2.0800 1.00 2653 136 0.2490 0.2708
REMARK 3 25 2.0800 - 2.0500 1.00 2654 148 0.2604 0.3384
REMARK 3 26 2.0500 - 2.0300 1.00 2693 111 0.2609 0.2975
REMARK 3 27 2.0300 - 2.0000 1.00 2647 150 0.2678 0.3377
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.586
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 38.89
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.07
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 5992
REMARK 3 ANGLE : 0.747 8135
REMARK 3 CHIRALITY : 0.045 895
REMARK 3 PLANARITY : 0.005 1054
REMARK 3 DIHEDRAL : 14.971 2145
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8EH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-22.
REMARK 100 THE DEPOSITION ID IS D_1000268484.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-APR-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL12-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75913
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 38.860
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 13.40
REMARK 200 R MERGE (I) : 0.11000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.73000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5DVZ
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 62.35
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM PHOSPHATE MONOBASIC, 0.8
REMARK 280 M POTASSIUM PHOSPHATE DIBASIC, 0.1 M N-CYCLOHEXYL-3-
REMARK 280 AMINOPROPANESULFONIC ACID (CAPS), 0.2 M LITHIUM SULFATE, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -Y,X,Z
REMARK 290 4555 Y,-X,Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2
REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 82.43100
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.43100
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.02850
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 82.43100
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.43100
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.02850
REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 82.43100
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 82.43100
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.02850
REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 82.43100
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 82.43100
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.02850
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24940 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LYS A 2
REMARK 465 GLU A 386
REMARK 465 ARG A 387
REMARK 465 ILE A 388
REMARK 465 HIS A 389
REMARK 465 LEU A 390
REMARK 465 GLU A 391
REMARK 465 HIS A 392
REMARK 465 HIS A 393
REMARK 465 HIS A 394
REMARK 465 HIS A 395
REMARK 465 HIS A 396
REMARK 465 HIS A 397
REMARK 465 MET B 1
REMARK 465 GLU B 386
REMARK 465 ARG B 387
REMARK 465 ILE B 388
REMARK 465 HIS B 389
REMARK 465 LEU B 390
REMARK 465 GLU B 391
REMARK 465 HIS B 392
REMARK 465 HIS B 393
REMARK 465 HIS B 394
REMARK 465 HIS B 395
REMARK 465 HIS B 396
REMARK 465 HIS B 397
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 33 CG CD CE NZ
REMARK 470 GLU A 35 CG CD OE1 OE2
REMARK 470 SER A 36 OG
REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2
REMARK 470 LEU A 140 CG CD1 CD2
REMARK 470 GLU A 143 CG CD OE1 OE2
REMARK 470 LYS A 146 CG CD CE NZ
REMARK 470 LYS A 151 CG CD CE NZ
REMARK 470 LYS A 156 CG CD CE NZ
REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 210 CG CD CE NZ
REMARK 470 GLU A 376 CG CD OE1 OE2
REMARK 470 LYS B 2 CG CD CE NZ
REMARK 470 MET B 32 CG SD CE
REMARK 470 LYS B 33 CG CD CE NZ
REMARK 470 GLU B 35 CG CD OE1 OE2
REMARK 470 SER B 36 OG
REMARK 470 GLU B 132 CG CD OE1 OE2
REMARK 470 ILE B 136 CG1 CG2 CD1
REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2
REMARK 470 LYS B 139 CG CD CE NZ
REMARK 470 GLU B 143 CG CD OE1 OE2
REMARK 470 LYS B 146 CG CD CE NZ
REMARK 470 LYS B 151 CG CD CE NZ
REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 171 CG CD NE CZ NH1 NH2
REMARK 470 GLN B 178 CG CD OE1 NE2
REMARK 470 LYS B 261 CG CD CE NZ
REMARK 470 GLU B 376 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 79 -16.30 79.92
REMARK 500 THR A 161 -153.19 -128.72
REMARK 500 VAL A 187 32.05 -94.15
REMARK 500 SER A 228 -91.05 -113.46
REMARK 500 THR A 279 -168.82 -163.50
REMARK 500 THR B 79 -13.42 77.85
REMARK 500 THR B 161 -158.46 -130.67
REMARK 500 VAL B 187 33.89 -90.02
REMARK 500 SER B 228 -89.45 -117.80
REMARK 500 THR B 279 -168.00 -160.53
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 K A 403 K
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA A 263 O
REMARK 620 2 SER A 265 OG 83.0
REMARK 620 3 TYR A 301 O 91.4 93.2
REMARK 620 4 GLY A 303 O 156.3 73.7 93.8
REMARK 620 5 HOH A 502 O 81.5 88.4 172.5 93.6
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 K B 403 K
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA B 263 O
REMARK 620 2 SER B 265 OG 81.6
REMARK 620 3 TYR B 301 O 93.9 91.8
REMARK 620 4 GLY B 303 O 151.7 70.9 93.3
REMARK 620 5 HOH B 501 O 86.4 92.9 175.3 88.6
REMARK 620 N 1 2 3 4
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE STARTING CONSTRUCT WAS TRYPTOPHAN SYNTHASE BETA CHAIN 1, WHICH
REMARK 999 WAS ENGINEERED TO PRODUCE THE CONSTRUCT USED FOR EXPRESSION AND
REMARK 999 CRYSTALLIZATION.
DBREF 8EH1 A 1 389 UNP P50909 TRPB1_THEMA 1 389
DBREF 8EH1 B 1 389 UNP P50909 TRPB1_THEMA 1 389
SEQADV 8EH1 ASN A 4 UNP P50909 TYR 4 ENGINEERED MUTATION
SEQADV 8EH1 ASN A 12 UNP P50909 TYR 12 ENGINEERED MUTATION
SEQADV 8EH1 GLY A 19 UNP P50909 PRO 19 ENGINEERED MUTATION
SEQADV 8EH1 GLY A 30 UNP P50909 GLU 30 ENGINEERED MUTATION
SEQADV 8EH1 TYR A 41 UNP P50909 PHE 41 ENGINEERED MUTATION
SEQADV 8EH1 VAL A 69 UNP P50909 ILE 69 ENGINEERED MUTATION
SEQADV 8EH1 LEU A 96 UNP P50909 LYS 96 ENGINEERED MUTATION
SEQADV 8EH1 THR A 103 UNP P50909 ILE 103 ENGINEERED MUTATION
SEQADV 8EH1 GLY A 105 UNP P50909 GLU 105 ENGINEERED MUTATION
SEQADV 8EH1 LEU A 140 UNP P50909 PRO 140 ENGINEERED MUTATION
SEQADV 8EH1 ASP A 167 UNP P50909 ASN 167 ENGINEERED MUTATION
SEQADV 8EH1 PRO A 184 UNP P50909 ILE 184 ENGINEERED MUTATION
SEQADV 8EH1 PRO A 213 UNP P50909 LEU 213 ENGINEERED MUTATION
SEQADV 8EH1 SER A 228 UNP P50909 GLY 228 ENGINEERED MUTATION
SEQADV 8EH1 ALA A 291 UNP P50909 VAL 291 ENGINEERED MUTATION
SEQADV 8EH1 SER A 292 UNP P50909 THR 292 ENGINEERED MUTATION
SEQADV 8EH1 PRO A 302 UNP P50909 SER 302 ENGINEERED MUTATION
SEQADV 8EH1 HIS A 389 UNP P50909 ARG 389 ENGINEERED MUTATION
SEQADV 8EH1 LEU A 390 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 GLU A 391 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 392 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 393 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 394 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 395 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 396 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS A 397 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 ASN B 4 UNP P50909 TYR 4 ENGINEERED MUTATION
SEQADV 8EH1 ASN B 12 UNP P50909 TYR 12 ENGINEERED MUTATION
SEQADV 8EH1 GLY B 19 UNP P50909 PRO 19 ENGINEERED MUTATION
SEQADV 8EH1 GLY B 30 UNP P50909 GLU 30 ENGINEERED MUTATION
SEQADV 8EH1 TYR B 41 UNP P50909 PHE 41 ENGINEERED MUTATION
SEQADV 8EH1 VAL B 69 UNP P50909 ILE 69 ENGINEERED MUTATION
SEQADV 8EH1 LEU B 96 UNP P50909 LYS 96 ENGINEERED MUTATION
SEQADV 8EH1 THR B 103 UNP P50909 ILE 103 ENGINEERED MUTATION
SEQADV 8EH1 GLY B 105 UNP P50909 GLU 105 ENGINEERED MUTATION
SEQADV 8EH1 LEU B 140 UNP P50909 PRO 140 ENGINEERED MUTATION
SEQADV 8EH1 ASP B 167 UNP P50909 ASN 167 ENGINEERED MUTATION
SEQADV 8EH1 PRO B 184 UNP P50909 ILE 184 ENGINEERED MUTATION
SEQADV 8EH1 PRO B 213 UNP P50909 LEU 213 ENGINEERED MUTATION
SEQADV 8EH1 SER B 228 UNP P50909 GLY 228 ENGINEERED MUTATION
SEQADV 8EH1 ALA B 291 UNP P50909 VAL 291 ENGINEERED MUTATION
SEQADV 8EH1 SER B 292 UNP P50909 THR 292 ENGINEERED MUTATION
SEQADV 8EH1 PRO B 302 UNP P50909 SER 302 ENGINEERED MUTATION
SEQADV 8EH1 HIS B 389 UNP P50909 ARG 389 ENGINEERED MUTATION
SEQADV 8EH1 LEU B 390 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 GLU B 391 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 392 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 393 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 394 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 395 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 396 UNP P50909 EXPRESSION TAG
SEQADV 8EH1 HIS B 397 UNP P50909 EXPRESSION TAG
SEQRES 1 A 397 MET LYS GLY ASN PHE GLY PRO TYR GLY GLY GLN ASN VAL
SEQRES 2 A 397 PRO GLU ILE LEU MET GLY ALA LEU GLU GLU LEU GLU ALA
SEQRES 3 A 397 ALA TYR GLU GLY ILE MET LYS ASP GLU SER PHE TRP LYS
SEQRES 4 A 397 GLU TYR ASN ASP LEU LEU ARG ASP TYR ALA GLY ARG PRO
SEQRES 5 A 397 THR PRO LEU TYR PHE ALA ARG ARG LEU SER GLU LYS TYR
SEQRES 6 A 397 GLY ALA ARG VAL TYR LEU LYS ARG GLU ASP LEU LEU HIS
SEQRES 7 A 397 THR GLY ALA HIS LYS ILE ASN ASN ALA ILE GLY GLN VAL
SEQRES 8 A 397 LEU LEU ALA LYS LEU MET GLY LYS THR ARG ILE THR ALA
SEQRES 9 A 397 GLY THR GLY ALA GLY GLN HIS GLY VAL ALA THR ALA THR
SEQRES 10 A 397 ALA ALA ALA LEU PHE GLY MET GLU CYS VAL ILE TYR MET
SEQRES 11 A 397 GLY GLU GLU ASP THR ILE ARG GLN LYS LEU ASN VAL GLU
SEQRES 12 A 397 ARG MET LYS LEU LEU GLY ALA LYS VAL VAL PRO VAL LYS
SEQRES 13 A 397 SER GLY SER ARG THR LEU LYS ASP ALA ILE ASP GLU ALA
SEQRES 14 A 397 LEU ARG ASP TRP ILE THR ASN LEU GLN THR THR TYR TYR
SEQRES 15 A 397 VAL PRO GLY SER VAL VAL GLY PRO HIS PRO TYR PRO ILE
SEQRES 16 A 397 ILE VAL ARG ASN PHE GLN LYS VAL ILE GLY GLU GLU THR
SEQRES 17 A 397 LYS LYS GLN ILE PRO GLU LYS GLU GLY ARG LEU PRO ASP
SEQRES 18 A 397 TYR ILE VAL ALA CYS VAL SER GLY GLY SER ASN ALA ALA
SEQRES 19 A 397 GLY ILE PHE TYR PRO PHE ILE ASP SER GLY VAL LYS LEU
SEQRES 20 A 397 ILE GLY VAL GLU ALA GLY GLY GLU GLY LEU GLU THR GLY
SEQRES 21 A 397 LYS HIS ALA ALA SER LEU LEU LYS GLY LYS ILE GLY TYR
SEQRES 22 A 397 LEU HIS GLY SER LYS THR PHE VAL LEU GLN ASP ASP TRP
SEQRES 23 A 397 GLY GLN VAL GLN ALA SER HIS SER VAL SER ALA GLY LEU
SEQRES 24 A 397 ASP TYR PRO GLY VAL GLY PRO GLU HIS ALA TYR TRP ARG
SEQRES 25 A 397 GLU THR GLY LYS VAL LEU TYR ASP ALA VAL THR ASP GLU
SEQRES 26 A 397 GLU ALA LEU ASP ALA PHE ILE GLU LEU SER ARG LEU GLU
SEQRES 27 A 397 GLY ILE ILE PRO ALA LEU GLU SER SER HIS ALA LEU ALA
SEQRES 28 A 397 TYR LEU LYS LYS ILE ASN ILE LYS GLY LYS VAL VAL VAL
SEQRES 29 A 397 VAL ASN LEU SER GLY ARG GLY ASP LYS ASP LEU GLU SER
SEQRES 30 A 397 VAL LEU ASN HIS PRO TYR VAL ARG GLU ARG ILE HIS LEU
SEQRES 31 A 397 GLU HIS HIS HIS HIS HIS HIS
SEQRES 1 B 397 MET LYS GLY ASN PHE GLY PRO TYR GLY GLY GLN ASN VAL
SEQRES 2 B 397 PRO GLU ILE LEU MET GLY ALA LEU GLU GLU LEU GLU ALA
SEQRES 3 B 397 ALA TYR GLU GLY ILE MET LYS ASP GLU SER PHE TRP LYS
SEQRES 4 B 397 GLU TYR ASN ASP LEU LEU ARG ASP TYR ALA GLY ARG PRO
SEQRES 5 B 397 THR PRO LEU TYR PHE ALA ARG ARG LEU SER GLU LYS TYR
SEQRES 6 B 397 GLY ALA ARG VAL TYR LEU LYS ARG GLU ASP LEU LEU HIS
SEQRES 7 B 397 THR GLY ALA HIS LYS ILE ASN ASN ALA ILE GLY GLN VAL
SEQRES 8 B 397 LEU LEU ALA LYS LEU MET GLY LYS THR ARG ILE THR ALA
SEQRES 9 B 397 GLY THR GLY ALA GLY GLN HIS GLY VAL ALA THR ALA THR
SEQRES 10 B 397 ALA ALA ALA LEU PHE GLY MET GLU CYS VAL ILE TYR MET
SEQRES 11 B 397 GLY GLU GLU ASP THR ILE ARG GLN LYS LEU ASN VAL GLU
SEQRES 12 B 397 ARG MET LYS LEU LEU GLY ALA LYS VAL VAL PRO VAL LYS
SEQRES 13 B 397 SER GLY SER ARG THR LEU LYS ASP ALA ILE ASP GLU ALA
SEQRES 14 B 397 LEU ARG ASP TRP ILE THR ASN LEU GLN THR THR TYR TYR
SEQRES 15 B 397 VAL PRO GLY SER VAL VAL GLY PRO HIS PRO TYR PRO ILE
SEQRES 16 B 397 ILE VAL ARG ASN PHE GLN LYS VAL ILE GLY GLU GLU THR
SEQRES 17 B 397 LYS LYS GLN ILE PRO GLU LYS GLU GLY ARG LEU PRO ASP
SEQRES 18 B 397 TYR ILE VAL ALA CYS VAL SER GLY GLY SER ASN ALA ALA
SEQRES 19 B 397 GLY ILE PHE TYR PRO PHE ILE ASP SER GLY VAL LYS LEU
SEQRES 20 B 397 ILE GLY VAL GLU ALA GLY GLY GLU GLY LEU GLU THR GLY
SEQRES 21 B 397 LYS HIS ALA ALA SER LEU LEU LYS GLY LYS ILE GLY TYR
SEQRES 22 B 397 LEU HIS GLY SER LYS THR PHE VAL LEU GLN ASP ASP TRP
SEQRES 23 B 397 GLY GLN VAL GLN ALA SER HIS SER VAL SER ALA GLY LEU
SEQRES 24 B 397 ASP TYR PRO GLY VAL GLY PRO GLU HIS ALA TYR TRP ARG
SEQRES 25 B 397 GLU THR GLY LYS VAL LEU TYR ASP ALA VAL THR ASP GLU
SEQRES 26 B 397 GLU ALA LEU ASP ALA PHE ILE GLU LEU SER ARG LEU GLU
SEQRES 27 B 397 GLY ILE ILE PRO ALA LEU GLU SER SER HIS ALA LEU ALA
SEQRES 28 B 397 TYR LEU LYS LYS ILE ASN ILE LYS GLY LYS VAL VAL VAL
SEQRES 29 B 397 VAL ASN LEU SER GLY ARG GLY ASP LYS ASP LEU GLU SER
SEQRES 30 B 397 VAL LEU ASN HIS PRO TYR VAL ARG GLU ARG ILE HIS LEU
SEQRES 31 B 397 GLU HIS HIS HIS HIS HIS HIS
HET 0JO A 401 21
HET ES1 A 402 11
HET K A 403 1
HET 0JO B 401 21
HET ES1 B 402 11
HET K B 403 1
HETNAM 0JO 2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)
HETNAM 2 0JO METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC
HETNAM 3 0JO ACID
HETNAM ES1 QUINOLIN-4-OL
HETNAM K POTASSIUM ION
FORMUL 3 0JO 2(C11 H13 N2 O7 P)
FORMUL 4 ES1 2(C9 H7 N O)
FORMUL 5 K 2(K 1+)
FORMUL 9 HOH *172(H2 O)
HELIX 1 AA1 ILE A 16 MET A 32 1 17
HELIX 2 AA2 ASP A 34 TYR A 48 1 15
HELIX 3 AA3 ALA A 58 GLY A 66 1 9
HELIX 4 AA4 ASP A 75 ALA A 81 5 7
HELIX 5 AA5 HIS A 82 MET A 97 1 16
HELIX 6 AA6 GLY A 109 PHE A 122 1 14
HELIX 7 AA7 GLU A 133 GLN A 138 1 6
HELIX 8 AA8 GLN A 138 LEU A 148 1 11
HELIX 9 AA9 THR A 161 ASN A 176 1 16
HELIX 10 AB1 PRO A 192 LYS A 202 1 11
HELIX 11 AB2 LYS A 202 GLY A 217 1 16
HELIX 12 AB3 GLY A 230 TYR A 238 1 9
HELIX 13 AB4 PRO A 239 ILE A 241 5 3
HELIX 14 AB5 ALA A 264 GLY A 269 1 6
HELIX 15 AB6 SER A 296 ASP A 300 5 5
HELIX 16 AB7 GLY A 305 THR A 314 1 10
HELIX 17 AB8 THR A 323 GLY A 339 1 17
HELIX 18 AB9 ALA A 343 TYR A 352 1 10
HELIX 19 AC1 LEU A 353 ILE A 356 5 4
HELIX 20 AC2 GLY A 371 LYS A 373 5 3
HELIX 21 AC3 ASP A 374 ASN A 380 1 7
HELIX 22 AC4 PRO B 14 ILE B 16 5 3
HELIX 23 AC5 LEU B 17 MET B 32 1 16
HELIX 24 AC6 ASP B 34 TYR B 48 1 15
HELIX 25 AC7 ALA B 58 GLY B 66 1 9
HELIX 26 AC8 ASP B 75 ALA B 81 5 7
HELIX 27 AC9 HIS B 82 MET B 97 1 16
HELIX 28 AD1 GLY B 109 PHE B 122 1 14
HELIX 29 AD2 GLU B 132 GLN B 138 1 7
HELIX 30 AD3 GLN B 138 LEU B 148 1 11
HELIX 31 AD4 THR B 161 THR B 175 1 15
HELIX 32 AD5 PRO B 192 LYS B 202 1 11
HELIX 33 AD6 LYS B 202 GLY B 217 1 16
HELIX 34 AD7 GLY B 230 TYR B 238 1 9
HELIX 35 AD8 PRO B 239 ILE B 241 5 3
HELIX 36 AD9 ALA B 264 GLY B 269 1 6
HELIX 37 AE1 SER B 296 ASP B 300 5 5
HELIX 38 AE2 GLY B 305 THR B 314 1 10
HELIX 39 AE3 ASP B 324 GLY B 339 1 16
HELIX 40 AE4 ALA B 343 TYR B 352 1 10
HELIX 41 AE5 LEU B 353 LYS B 355 5 3
HELIX 42 AE6 GLY B 371 LYS B 373 5 3
HELIX 43 AE7 ASP B 374 ASN B 380 1 7
SHEET 1 AA1 2 ASN A 4 PHE A 5 0
SHEET 2 AA1 2 TYR A 8 GLY A 9 -1 O TYR A 8 N PHE A 5
SHEET 1 AA2 6 LEU A 55 PHE A 57 0
SHEET 2 AA2 6 ARG A 68 ARG A 73 -1 O LEU A 71 N TYR A 56
SHEET 3 AA2 6 VAL A 362 LEU A 367 1 O VAL A 363 N TYR A 70
SHEET 4 AA2 6 TYR A 222 CYS A 226 1 N VAL A 224 O VAL A 364
SHEET 5 AA2 6 LYS A 246 ALA A 252 1 O ILE A 248 N ILE A 223
SHEET 6 AA2 6 LEU A 318 VAL A 322 1 O ASP A 320 N GLU A 251
SHEET 1 AA3 4 LYS A 151 VAL A 155 0
SHEET 2 AA3 4 GLU A 125 GLY A 131 1 N ILE A 128 O LYS A 151
SHEET 3 AA3 4 ARG A 101 THR A 106 1 N ALA A 104 O TYR A 129
SHEET 4 AA3 4 THR A 180 TYR A 182 1 O TYR A 181 N ARG A 101
SHEET 1 AA4 2 LYS A 270 LEU A 274 0
SHEET 2 AA4 2 SER A 277 VAL A 281 -1 O VAL A 281 N LYS A 270
SHEET 1 AA5 2 ASN B 4 PHE B 5 0
SHEET 2 AA5 2 TYR B 8 GLY B 9 -1 O TYR B 8 N PHE B 5
SHEET 1 AA6 6 LEU B 55 PHE B 57 0
SHEET 2 AA6 6 ARG B 68 ARG B 73 -1 O LEU B 71 N TYR B 56
SHEET 3 AA6 6 VAL B 362 LEU B 367 1 O VAL B 363 N TYR B 70
SHEET 4 AA6 6 TYR B 222 CYS B 226 1 N VAL B 224 O VAL B 364
SHEET 5 AA6 6 LYS B 246 GLY B 254 1 O ILE B 248 N ILE B 223
SHEET 6 AA6 6 LEU B 318 THR B 323 1 O ASP B 320 N GLU B 251
SHEET 1 AA7 4 LYS B 151 VAL B 155 0
SHEET 2 AA7 4 GLU B 125 GLY B 131 1 N ILE B 128 O LYS B 151
SHEET 3 AA7 4 ARG B 101 THR B 106 1 N ILE B 102 O GLU B 125
SHEET 4 AA7 4 THR B 180 TYR B 182 1 O TYR B 181 N ARG B 101
SHEET 1 AA8 2 LYS B 270 LEU B 274 0
SHEET 2 AA8 2 SER B 277 VAL B 281 -1 O VAL B 281 N LYS B 270
LINK O ALA A 263 K K A 403 1555 1555 2.86
LINK OG SER A 265 K K A 403 1555 1555 2.76
LINK O TYR A 301 K K A 403 1555 1555 2.63
LINK O GLY A 303 K K A 403 1555 1555 2.68
LINK K K A 403 O HOH A 502 1555 1555 2.76
LINK O ALA B 263 K K B 403 1555 1555 2.78
LINK OG SER B 265 K K B 403 1555 1555 2.84
LINK O TYR B 301 K K B 403 1555 1555 2.64
LINK O GLY B 303 K K B 403 1555 1555 2.63
LINK K K B 403 O HOH B 501 1555 1555 2.62
CISPEP 1 ARG A 51 PRO A 52 0 -1.22
CISPEP 2 HIS A 191 PRO A 192 0 8.56
CISPEP 3 ARG B 51 PRO B 52 0 0.44
CISPEP 4 HIS B 191 PRO B 192 0 8.19
CRYST1 164.862 164.862 84.057 90.00 90.00 90.00 I 4 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006066 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006066 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011897 0.00000