data_8EKD # _entry.id 8EKD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8EKD pdb_00008ekd 10.2210/pdb8ekd/pdb WWPDB D_1000268405 ? ? EMDB EMD-28199 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-02-21 2 'Structure model' 1 1 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 2 'Structure model' '_struct.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8EKD _pdbx_database_status.recvd_initial_deposition_date 2022-09-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of SARS Cov2 Omicron BA.2 RBD in complex with LLNL-199' _pdbx_database_related.db_id EMD-28199 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 1 _pdbx_contact_author.email James.crowe@vumc.org _pdbx_contact_author.name_first James _pdbx_contact_author.name_last Crowe _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0049-1079 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Binshtein, E.' 1 0000-0003-2745-104X 'Crowe, J.E.' 2 0000-0002-0049-1079 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Binshtein, E.' 1 0000-0003-2745-104X primary 'Crowe, J.E.' 2 0000-0002-0049-1079 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fab LLNL-199 HC' 14310.997 1 ? ? ? ? 2 polymer man 'Fab LLNL-199 LC' 12470.904 1 ? ? ? ? 3 polymer man ;Spike protein S2' ; 20978.592 1 ? ? 'Receptor-binding domain (RBD)' ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVQLVESGGGLVKPGGSLRLSCAASGFTFRDVWMSWVRQAPGKGLEWVGRIKSKIDGGTTDYAAPVKGRFTISRDDSKNT LYLQMNSLKTEDTAVYYCTTAGSYYYDTVGPELPEGKFDYWGQGTLVTVSS ; ;EVQLVESGGGLVKPGGSLRLSCAASGFTFRDVWMSWVRQAPGKGLEWVGRIKSKIDGGTTDYAAPVKGRFTISRDDSKNT LYLQMNSLKTEDTAVYYCTTAGSYYYDTVGPELPEGKFDYWGQGTLVTVSS ; E ? 2 'polypeptide(L)' no no ;DIVMTQSPDSLAVSLGERATINCKSSQSVLYAANNKNYLAWYQQKPGQPPKLLMYWASERESGVPDRFSGSGSGAEFTLT ISSLQAEDVAIYYCQQYYSTLTFGGGTKVEIKR ; ;DIVMTQSPDSLAVSLGERATINCKSSQSVLYAANNKNYLAWYQQKPGQPPKLLMYWASERESGVPDRFSGSGSGAEFTLT ISSLQAEDVAIYYCQQYYSTLTFGGGTKVEIKR ; F ? 3 'polypeptide(L)' no no ;TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAP GQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPL RSYGFRPTYGVGHQPYRVVVLSFE ; ;TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAP GQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPL RSYGFRPTYGVGHQPYRVVVLSFE ; G ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 PHE n 1 30 ARG n 1 31 ASP n 1 32 VAL n 1 33 TRP n 1 34 MET n 1 35 SER n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 VAL n 1 49 GLY n 1 50 ARG n 1 51 ILE n 1 52 LYS n 1 53 SER n 1 54 LYS n 1 55 ILE n 1 56 ASP n 1 57 GLY n 1 58 GLY n 1 59 THR n 1 60 THR n 1 61 ASP n 1 62 TYR n 1 63 ALA n 1 64 ALA n 1 65 PRO n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 THR n 1 72 ILE n 1 73 SER n 1 74 ARG n 1 75 ASP n 1 76 ASP n 1 77 SER n 1 78 LYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 TYR n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 ASN n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 THR n 1 91 GLU n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 VAL n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 THR n 1 100 THR n 1 101 ALA n 1 102 GLY n 1 103 SER n 1 104 TYR n 1 105 TYR n 1 106 TYR n 1 107 ASP n 1 108 THR n 1 109 VAL n 1 110 GLY n 1 111 PRO n 1 112 GLU n 1 113 LEU n 1 114 PRO n 1 115 GLU n 1 116 GLY n 1 117 LYS n 1 118 PHE n 1 119 ASP n 1 120 TYR n 1 121 TRP n 1 122 GLY n 1 123 GLN n 1 124 GLY n 1 125 THR n 1 126 LEU n 1 127 VAL n 1 128 THR n 1 129 VAL n 1 130 SER n 1 131 SER n 2 1 ASP n 2 2 ILE n 2 3 VAL n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 ASP n 2 10 SER n 2 11 LEU n 2 12 ALA n 2 13 VAL n 2 14 SER n 2 15 LEU n 2 16 GLY n 2 17 GLU n 2 18 ARG n 2 19 ALA n 2 20 THR n 2 21 ILE n 2 22 ASN n 2 23 CYS n 2 24 LYS n 2 25 SER n 2 26 SER n 2 27 GLN n 2 28 SER n 2 29 VAL n 2 30 LEU n 2 31 TYR n 2 32 ALA n 2 33 ALA n 2 34 ASN n 2 35 ASN n 2 36 LYS n 2 37 ASN n 2 38 TYR n 2 39 LEU n 2 40 ALA n 2 41 TRP n 2 42 TYR n 2 43 GLN n 2 44 GLN n 2 45 LYS n 2 46 PRO n 2 47 GLY n 2 48 GLN n 2 49 PRO n 2 50 PRO n 2 51 LYS n 2 52 LEU n 2 53 LEU n 2 54 MET n 2 55 TYR n 2 56 TRP n 2 57 ALA n 2 58 SER n 2 59 GLU n 2 60 ARG n 2 61 GLU n 2 62 SER n 2 63 GLY n 2 64 VAL n 2 65 PRO n 2 66 ASP n 2 67 ARG n 2 68 PHE n 2 69 SER n 2 70 GLY n 2 71 SER n 2 72 GLY n 2 73 SER n 2 74 GLY n 2 75 ALA n 2 76 GLU n 2 77 PHE n 2 78 THR n 2 79 LEU n 2 80 THR n 2 81 ILE n 2 82 SER n 2 83 SER n 2 84 LEU n 2 85 GLN n 2 86 ALA n 2 87 GLU n 2 88 ASP n 2 89 VAL n 2 90 ALA n 2 91 ILE n 2 92 TYR n 2 93 TYR n 2 94 CYS n 2 95 GLN n 2 96 GLN n 2 97 TYR n 2 98 TYR n 2 99 SER n 2 100 THR n 2 101 LEU n 2 102 THR n 2 103 PHE n 2 104 GLY n 2 105 GLY n 2 106 GLY n 2 107 THR n 2 108 LYS n 2 109 VAL n 2 110 GLU n 2 111 ILE n 2 112 LYS n 2 113 ARG n 3 1 THR n 3 2 ASN n 3 3 LEU n 3 4 CYS n 3 5 PRO n 3 6 PHE n 3 7 ASP n 3 8 GLU n 3 9 VAL n 3 10 PHE n 3 11 ASN n 3 12 ALA n 3 13 THR n 3 14 ARG n 3 15 PHE n 3 16 ALA n 3 17 SER n 3 18 VAL n 3 19 TYR n 3 20 ALA n 3 21 TRP n 3 22 ASN n 3 23 ARG n 3 24 LYS n 3 25 ARG n 3 26 ILE n 3 27 SER n 3 28 ASN n 3 29 CYS n 3 30 VAL n 3 31 ALA n 3 32 ASP n 3 33 TYR n 3 34 SER n 3 35 VAL n 3 36 LEU n 3 37 TYR n 3 38 ASN n 3 39 PHE n 3 40 ALA n 3 41 PRO n 3 42 PHE n 3 43 PHE n 3 44 ALA n 3 45 PHE n 3 46 LYS n 3 47 CYS n 3 48 TYR n 3 49 GLY n 3 50 VAL n 3 51 SER n 3 52 PRO n 3 53 THR n 3 54 LYS n 3 55 LEU n 3 56 ASN n 3 57 ASP n 3 58 LEU n 3 59 CYS n 3 60 PHE n 3 61 THR n 3 62 ASN n 3 63 VAL n 3 64 TYR n 3 65 ALA n 3 66 ASP n 3 67 SER n 3 68 PHE n 3 69 VAL n 3 70 ILE n 3 71 ARG n 3 72 GLY n 3 73 ASN n 3 74 GLU n 3 75 VAL n 3 76 SER n 3 77 GLN n 3 78 ILE n 3 79 ALA n 3 80 PRO n 3 81 GLY n 3 82 GLN n 3 83 THR n 3 84 GLY n 3 85 ASN n 3 86 ILE n 3 87 ALA n 3 88 ASP n 3 89 TYR n 3 90 ASN n 3 91 TYR n 3 92 LYS n 3 93 LEU n 3 94 PRO n 3 95 ASP n 3 96 ASP n 3 97 PHE n 3 98 THR n 3 99 GLY n 3 100 CYS n 3 101 VAL n 3 102 ILE n 3 103 ALA n 3 104 TRP n 3 105 ASN n 3 106 SER n 3 107 ASN n 3 108 LYS n 3 109 LEU n 3 110 ASP n 3 111 SER n 3 112 LYS n 3 113 VAL n 3 114 GLY n 3 115 GLY n 3 116 ASN n 3 117 TYR n 3 118 ASN n 3 119 TYR n 3 120 LEU n 3 121 TYR n 3 122 ARG n 3 123 LEU n 3 124 PHE n 3 125 ARG n 3 126 LYS n 3 127 SER n 3 128 ASN n 3 129 LEU n 3 130 LYS n 3 131 PRO n 3 132 PHE n 3 133 GLU n 3 134 ARG n 3 135 ASP n 3 136 ILE n 3 137 SER n 3 138 THR n 3 139 GLU n 3 140 ILE n 3 141 TYR n 3 142 GLN n 3 143 ALA n 3 144 GLY n 3 145 ASN n 3 146 LYS n 3 147 PRO n 3 148 CYS n 3 149 ASN n 3 150 GLY n 3 151 VAL n 3 152 ALA n 3 153 GLY n 3 154 PHE n 3 155 ASN n 3 156 CYS n 3 157 TYR n 3 158 PHE n 3 159 PRO n 3 160 LEU n 3 161 ARG n 3 162 SER n 3 163 TYR n 3 164 GLY n 3 165 PHE n 3 166 ARG n 3 167 PRO n 3 168 THR n 3 169 TYR n 3 170 GLY n 3 171 VAL n 3 172 GLY n 3 173 HIS n 3 174 GLN n 3 175 PRO n 3 176 TYR n 3 177 ARG n 3 178 VAL n 3 179 VAL n 3 180 VAL n 3 181 LEU n 3 182 SER n 3 183 PHE n 3 184 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 131 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 113 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 184 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus' 2901879 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU E . n A 1 2 VAL 2 2 2 VAL VAL E . n A 1 3 GLN 3 3 3 GLN GLN E . n A 1 4 LEU 4 4 4 LEU LEU E . n A 1 5 VAL 5 5 5 VAL VAL E . n A 1 6 GLU 6 6 6 GLU GLU E . n A 1 7 SER 7 7 7 SER SER E . n A 1 8 GLY 8 8 8 GLY GLY E . n A 1 9 GLY 9 9 9 GLY GLY E . n A 1 10 GLY 10 10 10 GLY GLY E . n A 1 11 LEU 11 11 11 LEU LEU E . n A 1 12 VAL 12 12 12 VAL VAL E . n A 1 13 LYS 13 13 13 LYS LYS E . n A 1 14 PRO 14 14 14 PRO PRO E . n A 1 15 GLY 15 15 15 GLY GLY E . n A 1 16 GLY 16 16 16 GLY GLY E . n A 1 17 SER 17 17 17 SER SER E . n A 1 18 LEU 18 18 18 LEU LEU E . n A 1 19 ARG 19 19 19 ARG ARG E . n A 1 20 LEU 20 20 20 LEU LEU E . n A 1 21 SER 21 21 21 SER SER E . n A 1 22 CYS 22 22 22 CYS CYS E . n A 1 23 ALA 23 23 23 ALA ALA E . n A 1 24 ALA 24 24 24 ALA ALA E . n A 1 25 SER 25 25 25 SER SER E . n A 1 26 GLY 26 26 26 GLY GLY E . n A 1 27 PHE 27 27 27 PHE PHE E . n A 1 28 THR 28 28 28 THR THR E . n A 1 29 PHE 29 29 29 PHE PHE E . n A 1 30 ARG 30 30 30 ARG ARG E . n A 1 31 ASP 31 31 31 ASP ASP E . n A 1 32 VAL 32 32 32 VAL VAL E . n A 1 33 TRP 33 33 33 TRP TRP E . n A 1 34 MET 34 34 34 MET MET E . n A 1 35 SER 35 35 35 SER SER E . n A 1 36 TRP 36 36 36 TRP TRP E . n A 1 37 VAL 37 37 37 VAL VAL E . n A 1 38 ARG 38 38 38 ARG ARG E . n A 1 39 GLN 39 39 39 GLN GLN E . n A 1 40 ALA 40 40 40 ALA ALA E . n A 1 41 PRO 41 41 41 PRO PRO E . n A 1 42 GLY 42 42 42 GLY GLY E . n A 1 43 LYS 43 43 43 LYS LYS E . n A 1 44 GLY 44 44 44 GLY GLY E . n A 1 45 LEU 45 45 45 LEU LEU E . n A 1 46 GLU 46 46 46 GLU GLU E . n A 1 47 TRP 47 47 47 TRP TRP E . n A 1 48 VAL 48 48 48 VAL VAL E . n A 1 49 GLY 49 49 49 GLY GLY E . n A 1 50 ARG 50 50 50 ARG ARG E . n A 1 51 ILE 51 51 51 ILE ILE E . n A 1 52 LYS 52 52 52 LYS LYS E . n A 1 53 SER 53 53 53 SER SER E . n A 1 54 LYS 54 54 54 LYS LYS E . n A 1 55 ILE 55 55 55 ILE ILE E . n A 1 56 ASP 56 56 56 ASP ASP E . n A 1 57 GLY 57 57 57 GLY GLY E . n A 1 58 GLY 58 58 58 GLY GLY E . n A 1 59 THR 59 59 59 THR THR E . n A 1 60 THR 60 60 60 THR THR E . n A 1 61 ASP 61 61 61 ASP ASP E . n A 1 62 TYR 62 62 62 TYR TYR E . n A 1 63 ALA 63 63 63 ALA ALA E . n A 1 64 ALA 64 64 64 ALA ALA E . n A 1 65 PRO 65 65 65 PRO PRO E . n A 1 66 VAL 66 66 66 VAL VAL E . n A 1 67 LYS 67 67 67 LYS LYS E . n A 1 68 GLY 68 68 68 GLY GLY E . n A 1 69 ARG 69 69 69 ARG ARG E . n A 1 70 PHE 70 70 70 PHE PHE E . n A 1 71 THR 71 71 71 THR THR E . n A 1 72 ILE 72 72 72 ILE ILE E . n A 1 73 SER 73 73 73 SER SER E . n A 1 74 ARG 74 74 74 ARG ARG E . n A 1 75 ASP 75 75 75 ASP ASP E . n A 1 76 ASP 76 76 76 ASP ASP E . n A 1 77 SER 77 77 77 SER SER E . n A 1 78 LYS 78 78 78 LYS LYS E . n A 1 79 ASN 79 79 79 ASN ASN E . n A 1 80 THR 80 80 80 THR THR E . n A 1 81 LEU 81 81 81 LEU LEU E . n A 1 82 TYR 82 82 82 TYR TYR E . n A 1 83 LEU 83 83 83 LEU LEU E . n A 1 84 GLN 84 84 84 GLN GLN E . n A 1 85 MET 85 85 85 MET MET E . n A 1 86 ASN 86 86 86 ASN ASN E . n A 1 87 SER 87 87 87 SER SER E . n A 1 88 LEU 88 88 88 LEU LEU E . n A 1 89 LYS 89 89 89 LYS LYS E . n A 1 90 THR 90 90 90 THR THR E . n A 1 91 GLU 91 91 ? ? ? E . n A 1 92 ASP 92 92 ? ? ? E . n A 1 93 THR 93 93 ? ? ? E . n A 1 94 ALA 94 94 ? ? ? E . n A 1 95 VAL 95 95 95 VAL VAL E . n A 1 96 TYR 96 96 96 TYR TYR E . n A 1 97 TYR 97 97 97 TYR TYR E . n A 1 98 CYS 98 98 98 CYS CYS E . n A 1 99 THR 99 99 99 THR THR E . n A 1 100 THR 100 100 100 THR THR E . n A 1 101 ALA 101 101 101 ALA ALA E . n A 1 102 GLY 102 102 102 GLY GLY E . n A 1 103 SER 103 103 103 SER SER E . n A 1 104 TYR 104 104 104 TYR TYR E . n A 1 105 TYR 105 105 105 TYR TYR E . n A 1 106 TYR 106 106 106 TYR TYR E . n A 1 107 ASP 107 107 107 ASP ASP E . n A 1 108 THR 108 108 108 THR THR E . n A 1 109 VAL 109 109 109 VAL VAL E . n A 1 110 GLY 110 110 110 GLY GLY E . n A 1 111 PRO 111 111 111 PRO PRO E . n A 1 112 GLU 112 112 112 GLU GLU E . n A 1 113 LEU 113 113 113 LEU LEU E . n A 1 114 PRO 114 114 114 PRO PRO E . n A 1 115 GLU 115 115 115 GLU GLU E . n A 1 116 GLY 116 116 116 GLY GLY E . n A 1 117 LYS 117 117 117 LYS LYS E . n A 1 118 PHE 118 118 118 PHE PHE E . n A 1 119 ASP 119 119 119 ASP ASP E . n A 1 120 TYR 120 120 120 TYR TYR E . n A 1 121 TRP 121 121 121 TRP TRP E . n A 1 122 GLY 122 122 122 GLY GLY E . n A 1 123 GLN 123 123 123 GLN GLN E . n A 1 124 GLY 124 124 124 GLY GLY E . n A 1 125 THR 125 125 125 THR THR E . n A 1 126 LEU 126 126 126 LEU LEU E . n A 1 127 VAL 127 127 127 VAL VAL E . n A 1 128 THR 128 128 128 THR THR E . n A 1 129 VAL 129 129 129 VAL VAL E . n A 1 130 SER 130 130 130 SER SER E . n A 1 131 SER 131 131 ? ? ? E . n B 2 1 ASP 1 1 ? ? ? F . n B 2 2 ILE 2 2 2 ILE ILE F . n B 2 3 VAL 3 3 3 VAL VAL F . n B 2 4 MET 4 4 4 MET MET F . n B 2 5 THR 5 5 5 THR THR F . n B 2 6 GLN 6 6 6 GLN GLN F . n B 2 7 SER 7 7 7 SER SER F . n B 2 8 PRO 8 8 8 PRO PRO F . n B 2 9 ASP 9 9 9 ASP ASP F . n B 2 10 SER 10 10 10 SER SER F . n B 2 11 LEU 11 11 11 LEU LEU F . n B 2 12 ALA 12 12 12 ALA ALA F . n B 2 13 VAL 13 13 13 VAL VAL F . n B 2 14 SER 14 14 14 SER SER F . n B 2 15 LEU 15 15 15 LEU LEU F . n B 2 16 GLY 16 16 16 GLY GLY F . n B 2 17 GLU 17 17 17 GLU GLU F . n B 2 18 ARG 18 18 18 ARG ARG F . n B 2 19 ALA 19 19 19 ALA ALA F . n B 2 20 THR 20 20 20 THR THR F . n B 2 21 ILE 21 21 21 ILE ILE F . n B 2 22 ASN 22 22 22 ASN ASN F . n B 2 23 CYS 23 23 23 CYS CYS F . n B 2 24 LYS 24 24 24 LYS LYS F . n B 2 25 SER 25 25 25 SER SER F . n B 2 26 SER 26 26 26 SER SER F . n B 2 27 GLN 27 27 27 GLN GLN F . n B 2 28 SER 28 28 28 SER SER F . n B 2 29 VAL 29 29 29 VAL VAL F . n B 2 30 LEU 30 30 30 LEU LEU F . n B 2 31 TYR 31 31 31 TYR TYR F . n B 2 32 ALA 32 32 32 ALA ALA F . n B 2 33 ALA 33 33 33 ALA ALA F . n B 2 34 ASN 34 34 34 ASN ASN F . n B 2 35 ASN 35 35 35 ASN ASN F . n B 2 36 LYS 36 36 36 LYS LYS F . n B 2 37 ASN 37 37 37 ASN ASN F . n B 2 38 TYR 38 38 38 TYR TYR F . n B 2 39 LEU 39 39 39 LEU LEU F . n B 2 40 ALA 40 40 40 ALA ALA F . n B 2 41 TRP 41 41 41 TRP TRP F . n B 2 42 TYR 42 42 42 TYR TYR F . n B 2 43 GLN 43 43 43 GLN GLN F . n B 2 44 GLN 44 44 44 GLN GLN F . n B 2 45 LYS 45 45 45 LYS LYS F . n B 2 46 PRO 46 46 46 PRO PRO F . n B 2 47 GLY 47 47 47 GLY GLY F . n B 2 48 GLN 48 48 48 GLN GLN F . n B 2 49 PRO 49 49 49 PRO PRO F . n B 2 50 PRO 50 50 50 PRO PRO F . n B 2 51 LYS 51 51 51 LYS LYS F . n B 2 52 LEU 52 52 52 LEU LEU F . n B 2 53 LEU 53 53 53 LEU LEU F . n B 2 54 MET 54 54 54 MET MET F . n B 2 55 TYR 55 55 55 TYR TYR F . n B 2 56 TRP 56 56 56 TRP TRP F . n B 2 57 ALA 57 57 57 ALA ALA F . n B 2 58 SER 58 58 58 SER SER F . n B 2 59 GLU 59 59 59 GLU GLU F . n B 2 60 ARG 60 60 60 ARG ARG F . n B 2 61 GLU 61 61 61 GLU GLU F . n B 2 62 SER 62 62 62 SER SER F . n B 2 63 GLY 63 63 63 GLY GLY F . n B 2 64 VAL 64 64 64 VAL VAL F . n B 2 65 PRO 65 65 65 PRO PRO F . n B 2 66 ASP 66 66 66 ASP ASP F . n B 2 67 ARG 67 67 67 ARG ARG F . n B 2 68 PHE 68 68 68 PHE PHE F . n B 2 69 SER 69 69 69 SER SER F . n B 2 70 GLY 70 70 70 GLY GLY F . n B 2 71 SER 71 71 71 SER SER F . n B 2 72 GLY 72 72 72 GLY GLY F . n B 2 73 SER 73 73 73 SER SER F . n B 2 74 GLY 74 74 74 GLY GLY F . n B 2 75 ALA 75 75 75 ALA ALA F . n B 2 76 GLU 76 76 76 GLU GLU F . n B 2 77 PHE 77 77 77 PHE PHE F . n B 2 78 THR 78 78 78 THR THR F . n B 2 79 LEU 79 79 79 LEU LEU F . n B 2 80 THR 80 80 80 THR THR F . n B 2 81 ILE 81 81 81 ILE ILE F . n B 2 82 SER 82 82 82 SER SER F . n B 2 83 SER 83 83 83 SER SER F . n B 2 84 LEU 84 84 84 LEU LEU F . n B 2 85 GLN 85 85 85 GLN GLN F . n B 2 86 ALA 86 86 86 ALA ALA F . n B 2 87 GLU 87 87 87 GLU GLU F . n B 2 88 ASP 88 88 88 ASP ASP F . n B 2 89 VAL 89 89 89 VAL VAL F . n B 2 90 ALA 90 90 90 ALA ALA F . n B 2 91 ILE 91 91 91 ILE ILE F . n B 2 92 TYR 92 92 92 TYR TYR F . n B 2 93 TYR 93 93 93 TYR TYR F . n B 2 94 CYS 94 94 94 CYS CYS F . n B 2 95 GLN 95 95 95 GLN GLN F . n B 2 96 GLN 96 96 96 GLN GLN F . n B 2 97 TYR 97 97 97 TYR TYR F . n B 2 98 TYR 98 98 98 TYR TYR F . n B 2 99 SER 99 99 99 SER SER F . n B 2 100 THR 100 100 100 THR THR F . n B 2 101 LEU 101 101 101 LEU LEU F . n B 2 102 THR 102 102 102 THR THR F . n B 2 103 PHE 103 103 103 PHE PHE F . n B 2 104 GLY 104 104 104 GLY GLY F . n B 2 105 GLY 105 105 105 GLY GLY F . n B 2 106 GLY 106 106 106 GLY GLY F . n B 2 107 THR 107 107 107 THR THR F . n B 2 108 LYS 108 108 108 LYS LYS F . n B 2 109 VAL 109 109 109 VAL VAL F . n B 2 110 GLU 110 110 110 GLU GLU F . n B 2 111 ILE 111 111 111 ILE ILE F . n B 2 112 LYS 112 112 112 LYS LYS F . n B 2 113 ARG 113 113 ? ? ? F . n C 3 1 THR 1 333 333 THR THR G . n C 3 2 ASN 2 334 334 ASN ASN G . n C 3 3 LEU 3 335 335 LEU LEU G . n C 3 4 CYS 4 336 336 CYS CYS G . n C 3 5 PRO 5 337 337 PRO PRO G . n C 3 6 PHE 6 338 338 PHE PHE G . n C 3 7 ASP 7 339 339 ASP ASP G . n C 3 8 GLU 8 340 340 GLU GLU G . n C 3 9 VAL 9 341 341 VAL VAL G . n C 3 10 PHE 10 342 342 PHE PHE G . n C 3 11 ASN 11 343 343 ASN ASN G . n C 3 12 ALA 12 344 344 ALA ALA G . n C 3 13 THR 13 345 345 THR THR G . n C 3 14 ARG 14 346 346 ARG ARG G . n C 3 15 PHE 15 347 347 PHE PHE G . n C 3 16 ALA 16 348 348 ALA ALA G . n C 3 17 SER 17 349 349 SER SER G . n C 3 18 VAL 18 350 350 VAL VAL G . n C 3 19 TYR 19 351 351 TYR TYR G . n C 3 20 ALA 20 352 352 ALA ALA G . n C 3 21 TRP 21 353 353 TRP TRP G . n C 3 22 ASN 22 354 354 ASN ASN G . n C 3 23 ARG 23 355 355 ARG ARG G . n C 3 24 LYS 24 356 356 LYS LYS G . n C 3 25 ARG 25 357 357 ARG ARG G . n C 3 26 ILE 26 358 ? ? ? G . n C 3 27 SER 27 359 ? ? ? G . n C 3 28 ASN 28 360 ? ? ? G . n C 3 29 CYS 29 361 ? ? ? G . n C 3 30 VAL 30 362 ? ? ? G . n C 3 31 ALA 31 363 363 ALA ALA G . n C 3 32 ASP 32 364 364 ASP ASP G . n C 3 33 TYR 33 365 365 TYR TYR G . n C 3 34 SER 34 366 366 SER SER G . n C 3 35 VAL 35 367 367 VAL VAL G . n C 3 36 LEU 36 368 368 LEU LEU G . n C 3 37 TYR 37 369 369 TYR TYR G . n C 3 38 ASN 38 370 370 ASN ASN G . n C 3 39 PHE 39 371 371 PHE PHE G . n C 3 40 ALA 40 372 372 ALA ALA G . n C 3 41 PRO 41 373 373 PRO PRO G . n C 3 42 PHE 42 374 374 PHE PHE G . n C 3 43 PHE 43 375 375 PHE PHE G . n C 3 44 ALA 44 376 376 ALA ALA G . n C 3 45 PHE 45 377 377 PHE PHE G . n C 3 46 LYS 46 378 378 LYS LYS G . n C 3 47 CYS 47 379 379 CYS CYS G . n C 3 48 TYR 48 380 380 TYR TYR G . n C 3 49 GLY 49 381 381 GLY GLY G . n C 3 50 VAL 50 382 382 VAL VAL G . n C 3 51 SER 51 383 383 SER SER G . n C 3 52 PRO 52 384 384 PRO PRO G . n C 3 53 THR 53 385 385 THR THR G . n C 3 54 LYS 54 386 386 LYS LYS G . n C 3 55 LEU 55 387 387 LEU LEU G . n C 3 56 ASN 56 388 388 ASN ASN G . n C 3 57 ASP 57 389 ? ? ? G . n C 3 58 LEU 58 390 ? ? ? G . n C 3 59 CYS 59 391 ? ? ? G . n C 3 60 PHE 60 392 ? ? ? G . n C 3 61 THR 61 393 ? ? ? G . n C 3 62 ASN 62 394 394 ASN ASN G . n C 3 63 VAL 63 395 395 VAL VAL G . n C 3 64 TYR 64 396 396 TYR TYR G . n C 3 65 ALA 65 397 397 ALA ALA G . n C 3 66 ASP 66 398 398 ASP ASP G . n C 3 67 SER 67 399 399 SER SER G . n C 3 68 PHE 68 400 400 PHE PHE G . n C 3 69 VAL 69 401 401 VAL VAL G . n C 3 70 ILE 70 402 402 ILE ILE G . n C 3 71 ARG 71 403 403 ARG ARG G . n C 3 72 GLY 72 404 404 GLY GLY G . n C 3 73 ASN 73 405 405 ASN ASN G . n C 3 74 GLU 74 406 406 GLU GLU G . n C 3 75 VAL 75 407 407 VAL VAL G . n C 3 76 SER 76 408 408 SER SER G . n C 3 77 GLN 77 409 409 GLN GLN G . n C 3 78 ILE 78 410 410 ILE ILE G . n C 3 79 ALA 79 411 411 ALA ALA G . n C 3 80 PRO 80 412 412 PRO PRO G . n C 3 81 GLY 81 413 413 GLY GLY G . n C 3 82 GLN 82 414 414 GLN GLN G . n C 3 83 THR 83 415 415 THR THR G . n C 3 84 GLY 84 416 416 GLY GLY G . n C 3 85 ASN 85 417 417 ASN ASN G . n C 3 86 ILE 86 418 418 ILE ILE G . n C 3 87 ALA 87 419 419 ALA ALA G . n C 3 88 ASP 88 420 420 ASP ASP G . n C 3 89 TYR 89 421 421 TYR TYR G . n C 3 90 ASN 90 422 422 ASN ASN G . n C 3 91 TYR 91 423 423 TYR TYR G . n C 3 92 LYS 92 424 424 LYS LYS G . n C 3 93 LEU 93 425 425 LEU LEU G . n C 3 94 PRO 94 426 426 PRO PRO G . n C 3 95 ASP 95 427 427 ASP ASP G . n C 3 96 ASP 96 428 428 ASP ASP G . n C 3 97 PHE 97 429 429 PHE PHE G . n C 3 98 THR 98 430 430 THR THR G . n C 3 99 GLY 99 431 431 GLY GLY G . n C 3 100 CYS 100 432 432 CYS CYS G . n C 3 101 VAL 101 433 433 VAL VAL G . n C 3 102 ILE 102 434 434 ILE ILE G . n C 3 103 ALA 103 435 435 ALA ALA G . n C 3 104 TRP 104 436 436 TRP TRP G . n C 3 105 ASN 105 437 437 ASN ASN G . n C 3 106 SER 106 438 438 SER SER G . n C 3 107 ASN 107 439 439 ASN ASN G . n C 3 108 LYS 108 440 440 LYS LYS G . n C 3 109 LEU 109 441 441 LEU LEU G . n C 3 110 ASP 110 442 442 ASP ASP G . n C 3 111 SER 111 443 443 SER SER G . n C 3 112 LYS 112 444 444 LYS LYS G . n C 3 113 VAL 113 445 445 VAL VAL G . n C 3 114 GLY 114 446 446 GLY GLY G . n C 3 115 GLY 115 447 447 GLY GLY G . n C 3 116 ASN 116 448 448 ASN ASN G . n C 3 117 TYR 117 449 449 TYR TYR G . n C 3 118 ASN 118 450 450 ASN ASN G . n C 3 119 TYR 119 451 451 TYR TYR G . n C 3 120 LEU 120 452 452 LEU LEU G . n C 3 121 TYR 121 453 453 TYR TYR G . n C 3 122 ARG 122 454 454 ARG ARG G . n C 3 123 LEU 123 455 455 LEU LEU G . n C 3 124 PHE 124 456 456 PHE PHE G . n C 3 125 ARG 125 457 457 ARG ARG G . n C 3 126 LYS 126 458 458 LYS LYS G . n C 3 127 SER 127 459 459 SER SER G . n C 3 128 ASN 128 460 460 ASN ASN G . n C 3 129 LEU 129 461 461 LEU LEU G . n C 3 130 LYS 130 462 462 LYS LYS G . n C 3 131 PRO 131 463 463 PRO PRO G . n C 3 132 PHE 132 464 464 PHE PHE G . n C 3 133 GLU 133 465 465 GLU GLU G . n C 3 134 ARG 134 466 466 ARG ARG G . n C 3 135 ASP 135 467 467 ASP ASP G . n C 3 136 ILE 136 468 468 ILE ILE G . n C 3 137 SER 137 469 469 SER SER G . n C 3 138 THR 138 470 470 THR THR G . n C 3 139 GLU 139 471 471 GLU GLU G . n C 3 140 ILE 140 472 472 ILE ILE G . n C 3 141 TYR 141 473 473 TYR TYR G . n C 3 142 GLN 142 474 474 GLN GLN G . n C 3 143 ALA 143 475 475 ALA ALA G . n C 3 144 GLY 144 476 476 GLY GLY G . n C 3 145 ASN 145 477 477 ASN ASN G . n C 3 146 LYS 146 478 478 LYS LYS G . n C 3 147 PRO 147 479 479 PRO PRO G . n C 3 148 CYS 148 480 480 CYS CYS G . n C 3 149 ASN 149 481 481 ASN ASN G . n C 3 150 GLY 150 482 482 GLY GLY G . n C 3 151 VAL 151 483 483 VAL VAL G . n C 3 152 ALA 152 484 484 ALA ALA G . n C 3 153 GLY 153 485 485 GLY GLY G . n C 3 154 PHE 154 486 486 PHE PHE G . n C 3 155 ASN 155 487 487 ASN ASN G . n C 3 156 CYS 156 488 488 CYS CYS G . n C 3 157 TYR 157 489 489 TYR TYR G . n C 3 158 PHE 158 490 490 PHE PHE G . n C 3 159 PRO 159 491 491 PRO PRO G . n C 3 160 LEU 160 492 492 LEU LEU G . n C 3 161 ARG 161 493 493 ARG ARG G . n C 3 162 SER 162 494 494 SER SER G . n C 3 163 TYR 163 495 495 TYR TYR G . n C 3 164 GLY 164 496 496 GLY GLY G . n C 3 165 PHE 165 497 497 PHE PHE G . n C 3 166 ARG 166 498 498 ARG ARG G . n C 3 167 PRO 167 499 499 PRO PRO G . n C 3 168 THR 168 500 500 THR THR G . n C 3 169 TYR 169 501 501 TYR TYR G . n C 3 170 GLY 170 502 502 GLY GLY G . n C 3 171 VAL 171 503 503 VAL VAL G . n C 3 172 GLY 172 504 504 GLY GLY G . n C 3 173 HIS 173 505 505 HIS HIS G . n C 3 174 GLN 174 506 506 GLN GLN G . n C 3 175 PRO 175 507 507 PRO PRO G . n C 3 176 TYR 176 508 508 TYR TYR G . n C 3 177 ARG 177 509 509 ARG ARG G . n C 3 178 VAL 178 510 510 VAL VAL G . n C 3 179 VAL 179 511 511 VAL VAL G . n C 3 180 VAL 180 512 512 VAL VAL G . n C 3 181 LEU 181 513 513 LEU LEU G . n C 3 182 SER 182 514 514 SER SER G . n C 3 183 PHE 183 515 515 PHE PHE G . n C 3 184 GLU 184 516 516 GLU GLU G . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id G _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E LYS 78 ? CG ? A LYS 78 CG 2 1 Y 1 E LYS 78 ? CD ? A LYS 78 CD 3 1 Y 1 E LYS 78 ? CE ? A LYS 78 CE 4 1 Y 1 E LYS 78 ? NZ ? A LYS 78 NZ 5 1 Y 1 G VAL 382 ? CG1 ? C VAL 50 CG1 6 1 Y 1 G VAL 382 ? CG2 ? C VAL 50 CG2 7 1 Y 1 G SER 383 ? OG ? C SER 51 OG 8 1 Y 1 G THR 385 ? OG1 ? C THR 53 OG1 9 1 Y 1 G THR 385 ? CG2 ? C THR 53 CG2 10 1 Y 1 G SER 469 ? OG ? C SER 137 OG 11 1 Y 1 G THR 500 ? OG1 ? C THR 168 OG1 12 1 Y 1 G THR 500 ? CG2 ? C THR 168 CG2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8EKD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8EKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8EKD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8EKD _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3323 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.691 ? 4506 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 8.646 ? 461 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 473 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 580 ? f_plane_restr ? ? # _struct.entry_id 8EKD _struct.title 'Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8EKD _struct_keywords.text 'Fab, Cov2, BA.2, Omicron, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8EKD 8EKD ? 1 ? 1 2 PDB 8EKD 8EKD ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFE ; 333 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8EKD E 1 ? 131 ? 8EKD 1 ? 131 ? 1 131 2 2 8EKD F 1 ? 113 ? 8EKD 1 ? 113 ? 1 113 3 3 8EKD G 1 ? 184 ? P0DTC2 333 ? 516 ? 333 516 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 8EKD ASP G 7 ? UNP P0DTC2 GLY 339 conflict 339 1 3 8EKD PHE G 39 ? UNP P0DTC2 SER 371 conflict 371 2 3 8EKD PRO G 41 ? UNP P0DTC2 SER 373 conflict 373 3 3 8EKD PHE G 43 ? UNP P0DTC2 SER 375 conflict 375 4 3 8EKD ALA G 44 ? UNP P0DTC2 THR 376 conflict 376 5 3 8EKD ASN G 73 ? UNP P0DTC2 ASP 405 conflict 405 6 3 8EKD SER G 76 ? UNP P0DTC2 ARG 408 conflict 408 7 3 8EKD ASN G 85 ? UNP P0DTC2 LYS 417 conflict 417 8 3 8EKD LYS G 108 ? UNP P0DTC2 ASN 440 conflict 440 9 3 8EKD ASN G 145 ? UNP P0DTC2 SER 477 conflict 477 10 3 8EKD LYS G 146 ? UNP P0DTC2 THR 478 conflict 478 11 3 8EKD ALA G 152 ? UNP P0DTC2 GLU 484 conflict 484 12 3 8EKD ARG G 161 ? UNP P0DTC2 GLN 493 conflict 493 13 3 8EKD ARG G 166 ? UNP P0DTC2 GLN 498 conflict 498 14 3 8EKD TYR G 169 ? UNP P0DTC2 ASN 501 conflict 501 15 3 8EKD HIS G 173 ? UNP P0DTC2 TYR 505 conflict 505 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 64 ? LYS A 67 ? ALA E 64 LYS E 67 5 ? 4 HELX_P HELX_P2 AA2 PRO C 5 ? ASN C 11 ? PRO G 337 ASN G 343 1 ? 7 HELX_P HELX_P3 AA3 TYR C 33 ? PHE C 39 ? TYR G 365 PHE G 371 1 ? 7 HELX_P HELX_P4 AA4 ASN C 73 ? VAL C 75 ? ASN G 405 VAL G 407 5 ? 3 HELX_P HELX_P5 AA5 GLY C 84 ? TYR C 89 ? GLY G 416 TYR G 421 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 98 SG ? ? E CYS 22 E CYS 98 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 94 SG ? ? F CYS 23 F CYS 94 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? C CYS 47 SG ? ? ? 1_555 C CYS 100 SG ? ? G CYS 379 G CYS 432 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? C ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? G ASN 343 G NAG 601 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 7 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 7 _struct_mon_prot_cis.auth_asym_id F _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 8 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 8 _struct_mon_prot_cis.pdbx_auth_asym_id_2 F _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? SER A 7 ? GLN E 3 SER E 7 AA1 2 SER A 17 ? SER A 25 ? SER E 17 SER E 25 AA1 3 THR A 80 ? ASN A 86 ? THR E 80 ASN E 86 AA1 4 PHE A 70 ? ARG A 74 ? PHE E 70 ARG E 74 AA2 1 LEU A 11 ? VAL A 12 ? LEU E 11 VAL E 12 AA2 2 THR A 128 ? VAL A 129 ? THR E 128 VAL E 129 AA3 1 THR A 60 ? TYR A 62 ? THR E 60 TYR E 62 AA3 2 LEU A 45 ? ILE A 51 ? LEU E 45 ILE E 51 AA3 3 SER A 35 ? GLN A 39 ? SER E 35 GLN E 39 AA3 4 TYR A 96 ? THR A 99 ? TYR E 96 THR E 99 AA4 1 MET B 4 ? SER B 7 ? MET F 4 SER F 7 AA4 2 ALA B 19 ? SER B 25 ? ALA F 19 SER F 25 AA4 3 GLU B 76 ? ILE B 81 ? GLU F 76 ILE F 81 AA4 4 PHE B 68 ? SER B 73 ? PHE F 68 SER F 73 AA5 1 SER B 10 ? ALA B 12 ? SER F 10 ALA F 12 AA5 2 THR B 107 ? GLU B 110 ? THR F 107 GLU F 110 AA5 3 ILE B 91 ? GLN B 96 ? ILE F 91 GLN F 96 AA5 4 LEU B 39 ? GLN B 44 ? LEU F 39 GLN F 44 AA5 5 PRO B 50 ? TYR B 55 ? PRO F 50 TYR F 55 AA5 6 GLU B 59 ? ARG B 60 ? GLU F 59 ARG F 60 AA6 1 ASN C 22 ? LYS C 24 ? ASN G 354 LYS G 356 AA6 2 VAL C 63 ? ARG C 71 ? VAL G 395 ARG G 403 AA6 3 PRO C 175 ? PHE C 183 ? PRO G 507 PHE G 515 AA6 4 GLY C 99 ? CYS C 100 ? GLY G 431 CYS G 432 AA7 1 LEU C 120 ? ARG C 122 ? LEU G 452 ARG G 454 AA7 2 LEU C 160 ? SER C 162 ? LEU G 492 SER G 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL E 5 O ALA A 23 ? O ALA E 23 AA1 2 3 N LEU A 18 ? N LEU E 18 O MET A 85 ? O MET E 85 AA1 3 4 O GLN A 84 ? O GLN E 84 N THR A 71 ? N THR E 71 AA2 1 2 N VAL A 12 ? N VAL E 12 O THR A 128 ? O THR E 128 AA3 1 2 O ASP A 61 ? O ASP E 61 N ARG A 50 ? N ARG E 50 AA3 2 3 O GLU A 46 ? O GLU E 46 N ARG A 38 ? N ARG E 38 AA3 3 4 N VAL A 37 ? N VAL E 37 O TYR A 97 ? O TYR E 97 AA4 1 2 N THR B 5 ? N THR F 5 O LYS B 24 ? O LYS F 24 AA4 2 3 N CYS B 23 ? N CYS F 23 O PHE B 77 ? O PHE F 77 AA4 3 4 O THR B 80 ? O THR F 80 N SER B 69 ? N SER F 69 AA5 1 2 N LEU B 11 ? N LEU F 11 O LYS B 108 ? O LYS F 108 AA5 2 3 O THR B 107 ? O THR F 107 N TYR B 92 ? N TYR F 92 AA5 3 4 O ILE B 91 ? O ILE F 91 N GLN B 44 ? N GLN F 44 AA5 4 5 N TRP B 41 ? N TRP F 41 O LEU B 53 ? O LEU F 53 AA5 5 6 N TYR B 55 ? N TYR F 55 O GLU B 59 ? O GLU F 59 AA6 1 2 N LYS C 24 ? N LYS G 356 O ALA C 65 ? O ALA G 397 AA6 2 3 N ILE C 70 ? N ILE G 402 O TYR C 176 ? O TYR G 508 AA6 3 4 O LEU C 181 ? O LEU G 513 N CYS C 100 ? N CYS G 432 AA7 1 2 N TYR C 121 ? N TYR G 453 O ARG C 161 ? O ARG G 493 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 8 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 107 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 G _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 507 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 G _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 507 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 G _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 507 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 103.04 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation -8.66 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.40 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP F 56 ? ? 58.18 15.30 2 1 ALA F 57 ? ? 68.10 -3.59 3 1 SER F 58 ? ? -132.34 -37.85 4 1 PRO F 65 ? ? -69.58 -173.77 5 1 SER F 71 ? ? -160.55 117.40 6 1 THR F 100 ? ? 53.78 -159.80 7 1 ASP G 428 ? ? -98.66 58.90 8 1 LEU G 441 ? ? -90.23 -60.57 9 1 THR G 470 ? ? -85.98 35.86 10 1 ALA G 475 ? ? 56.30 -129.21 11 1 CYS G 480 ? ? 72.78 -11.14 12 1 ASN G 487 ? ? 66.48 -1.30 # _pdbx_entry_details.entry_id 8EKD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8EKD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol ? # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id 1 1 7L7E E ? ? E ? PDB 'experimental model' 7L7E 1 2 1 7L7E F ? ? F ? PDB 'experimental model' 7L7E 1 3 1 7L7E G ? ? G ? PDB 'experimental model' 7L7E 1 # _em_3d_reconstruction.entry_id 8EKD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 386950 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 'MULTIPLE SOURCES' COMPLEX 'SARS Cov2 Omicron BA.2 RBD complex with Fab LLNL-199' ? ? ? 1,2 2 1 RECOMBINANT COMPLEX 'SARS Cov2 Omicron BA.2 RBD' ? ? ? 3 3 1 RECOMBINANT COMPLEX 'Fab LLNL-199' ? ? ? 1,2 # _em_imaging.entry_id 8EKD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8EKD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 293.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8EKD _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E GLU 91 ? A GLU 91 2 1 Y 1 E ASP 92 ? A ASP 92 3 1 Y 1 E THR 93 ? A THR 93 4 1 Y 1 E ALA 94 ? A ALA 94 5 1 Y 1 E SER 131 ? A SER 131 6 1 Y 1 F ASP 1 ? B ASP 1 7 1 Y 1 F ARG 113 ? B ARG 113 8 1 Y 1 G ILE 358 ? C ILE 26 9 1 Y 1 G SER 359 ? C SER 27 10 1 Y 1 G ASN 360 ? C ASN 28 11 1 Y 1 G CYS 361 ? C CYS 29 12 1 Y 1 G VAL 362 ? C VAL 30 13 1 Y 1 G ASP 389 ? C ASP 57 14 1 Y 1 G LEU 390 ? C LEU 58 15 1 Y 1 G CYS 391 ? C CYS 59 16 1 Y 1 G PHE 392 ? C PHE 60 17 1 Y 1 G THR 393 ? C THR 61 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_molwt.entity_assembly_id _em_entity_assembly_molwt.experimental_flag _em_entity_assembly_molwt.id _em_entity_assembly_molwt.units _em_entity_assembly_molwt.value 1 NO 1 ? ? 1 NO 2 ? ? 1 NO 3 ? ? # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 2 1 2901879 'Severe acute respiratory syndrome coronavirus' ? ? ? ? ? ? ? 3 2 9606 'Homo sapiens' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 2 1 9606 'Homo sapiens' ? ? ? 3 2 9606 'Homo sapiens' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52.173 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 23469 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 4 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4 CLASSIFICATION ? 11 1 ? ? RELION 4 RECONSTRUCTION ? 12 1 ? ? RELION 4 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.6 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Defense Advanced Research Projects Agency (DARPA)' 'United States' HR0011-18-3-0001 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI157155 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7L7E _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8EKD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_