HEADER TRANSFERASE/TRANSFERASE INHIBITOR 23-SEP-22 8ELC TITLE HUMAN JNK2 BOUND TO COVALENT INHIBITOR YL2056 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 9,MAPK 9,JNK-55,STRESS-ACTIVATED PROTEIN KINASE COMPND 5 1A,SAPK1A,STRESS-ACTIVATED PROTEIN KINASE JNK2,C-JUN N-TERMINAL COMPND 6 KINASE 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK9, JNK2, PRKM9, SAPK1A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS JNK2, YLIU2056, KINASE INHIBITOR, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX, CELL CYCLE, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.LI,D.GURBANI,K.D.WESTOVER REVDAT 3 13-NOV-24 8ELC 1 REMARK REVDAT 2 25-OCT-23 8ELC 1 REMARK REVDAT 1 28-JUN-23 8ELC 0 JRNL AUTH W.LU,Y.LIU,Y.GAO,Q.GENG,D.GURBANI,L.LI,S.B.FICARRO, JRNL AUTH 2 C.J.MEYER,D.SINHA,I.YOU,J.TSE,Z.HE,W.JI,J.CHE,A.Y.KIM,T.YU, JRNL AUTH 3 K.WEN,K.C.ANDERSON,J.A.MARTO,K.D.WESTOVER,T.ZHANG,N.S.GRAY JRNL TITL DEVELOPMENT OF A COVALENT INHIBITOR OF C-JUN N-TERMINAL JRNL TITL 2 PROTEIN KINASE (JNK) 2/3 WITH SELECTIVITY OVER JNK1. JRNL REF J.MED.CHEM. V. 66 3356 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 36826833 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01834 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0600 - 4.1400 0.99 3055 146 0.1920 0.2333 REMARK 3 2 4.1400 - 3.2900 1.00 2938 151 0.1848 0.2537 REMARK 3 3 3.2900 - 2.8700 0.98 2852 150 0.2186 0.2573 REMARK 3 4 2.8700 - 2.6100 0.99 2878 129 0.2147 0.2661 REMARK 3 5 2.6100 - 2.4200 0.98 2809 158 0.2252 0.3107 REMARK 3 6 2.4200 - 2.2800 0.97 2764 152 0.2479 0.2846 REMARK 3 7 2.2800 - 2.1700 0.96 2751 137 0.2677 0.3079 REMARK 3 8 2.1700 - 2.0720 0.95 2722 120 0.2845 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.739 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3002 REMARK 3 ANGLE : 1.070 4070 REMARK 3 CHIRALITY : 0.054 445 REMARK 3 PLANARITY : 0.007 515 REMARK 3 DIHEDRAL : 11.613 396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ELC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.072 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM PHOSPHATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.61750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.05850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.88050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.05850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.61750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.88050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 CYS A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 GLU A 364 REMARK 465 GLU A 365 REMARK 465 ARG A 366 REMARK 465 SER A 367 REMARK 465 LYS A 368 REMARK 465 ASN A 369 REMARK 465 GLY A 370 REMARK 465 VAL A 371 REMARK 465 VAL A 372 REMARK 465 LYS A 373 REMARK 465 ASP A 374 REMARK 465 GLN A 375 REMARK 465 PRO A 376 REMARK 465 SER A 377 REMARK 465 ASP A 378 REMARK 465 ALA A 379 REMARK 465 ALA A 380 REMARK 465 VAL A 381 REMARK 465 SER A 382 REMARK 465 SER A 383 REMARK 465 ASN A 384 REMARK 465 ALA A 385 REMARK 465 THR A 386 REMARK 465 PRO A 387 REMARK 465 SER A 388 REMARK 465 GLN A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 ILE A 393 REMARK 465 ASN A 394 REMARK 465 ASP A 395 REMARK 465 ILE A 396 REMARK 465 SER A 397 REMARK 465 SER A 398 REMARK 465 MET A 399 REMARK 465 SER A 400 REMARK 465 THR A 401 REMARK 465 GLU A 402 REMARK 465 GLN A 403 REMARK 465 THR A 404 REMARK 465 LEU A 405 REMARK 465 ALA A 406 REMARK 465 SER A 407 REMARK 465 ASP A 408 REMARK 465 THR A 409 REMARK 465 ASP A 410 REMARK 465 SER A 411 REMARK 465 SER A 412 REMARK 465 LEU A 413 REMARK 465 ASP A 414 REMARK 465 ALA A 415 REMARK 465 SER A 416 REMARK 465 THR A 417 REMARK 465 GLY A 418 REMARK 465 PRO A 419 REMARK 465 LEU A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 CYS A 423 REMARK 465 ARG A 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 116 C05 Y56 A 501 2.02 REMARK 500 O HOH A 604 O HOH A 637 2.03 REMARK 500 O HOH A 654 O HOH A 658 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 100 NH1 ARG A 174 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 204 CB GLU A 204 CG -0.143 REMARK 500 GLU A 204 CG GLU A 204 CD -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -75.00 65.43 REMARK 500 SER A 18 -143.57 -89.01 REMARK 500 ARG A 59 58.37 36.89 REMARK 500 GLN A 102 -47.32 -138.70 REMARK 500 ARG A 150 -10.68 75.42 REMARK 500 ASP A 151 41.31 -140.79 REMARK 500 ASN A 179 -106.01 50.45 REMARK 500 MET A 181 -139.20 -154.76 REMARK 500 MET A 182 136.03 90.55 REMARK 500 TYR A 185 -157.00 -131.41 REMARK 500 GLN A 226 63.69 -102.78 REMARK 500 SER A 282 7.47 53.36 REMARK 500 GLU A 283 49.11 -107.90 REMARK 500 SER A 284 167.20 179.67 REMARK 500 HIS A 347 114.25 59.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ELC A 1 424 UNP P45984 MK09_HUMAN 1 424 SEQRES 1 A 424 MET SER ASP SER LYS CYS ASP SER GLN PHE TYR SER VAL SEQRES 2 A 424 GLN VAL ALA ASP SER THR PHE THR VAL LEU LYS ARG TYR SEQRES 3 A 424 GLN GLN LEU LYS PRO ILE GLY SER GLY ALA GLN GLY ILE SEQRES 4 A 424 VAL CYS ALA ALA PHE ASP THR VAL LEU GLY ILE ASN VAL SEQRES 5 A 424 ALA VAL LYS LYS LEU SER ARG PRO PHE GLN ASN GLN THR SEQRES 6 A 424 HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL LEU LEU LYS SEQRES 7 A 424 CYS VAL ASN HIS LYS ASN ILE ILE SER LEU LEU ASN VAL SEQRES 8 A 424 PHE THR PRO GLN LYS THR LEU GLU GLU PHE GLN ASP VAL SEQRES 9 A 424 TYR LEU VAL MET GLU LEU MET ASP ALA ASN LEU CYS GLN SEQRES 10 A 424 VAL ILE HIS MET GLU LEU ASP HIS GLU ARG MET SER TYR SEQRES 11 A 424 LEU LEU TYR GLN MET LEU CYS GLY ILE LYS HIS LEU HIS SEQRES 12 A 424 SER ALA GLY ILE ILE HIS ARG ASP LEU LYS PRO SER ASN SEQRES 13 A 424 ILE VAL VAL LYS SER ASP CYS THR LEU LYS ILE LEU ASP SEQRES 14 A 424 PHE GLY LEU ALA ARG THR ALA CYS THR ASN PHE MET MET SEQRES 15 A 424 THR PRO TYR VAL VAL THR ARG TYR TYR ARG ALA PRO GLU SEQRES 16 A 424 VAL ILE LEU GLY MET GLY TYR LYS GLU ASN VAL ASP ILE SEQRES 17 A 424 TRP SER VAL GLY CYS ILE MET GLY GLU LEU VAL LYS GLY SEQRES 18 A 424 CYS VAL ILE PHE GLN GLY THR ASP HIS ILE ASP GLN TRP SEQRES 19 A 424 ASN LYS VAL ILE GLU GLN LEU GLY THR PRO SER ALA GLU SEQRES 20 A 424 PHE MET LYS LYS LEU GLN PRO THR VAL ARG ASN TYR VAL SEQRES 21 A 424 GLU ASN ARG PRO LYS TYR PRO GLY ILE LYS PHE GLU GLU SEQRES 22 A 424 LEU PHE PRO ASP TRP ILE PHE PRO SER GLU SER GLU ARG SEQRES 23 A 424 ASP LYS ILE LYS THR SER GLN ALA ARG ASP LEU LEU SER SEQRES 24 A 424 LYS MET LEU VAL ILE ASP PRO ASP LYS ARG ILE SER VAL SEQRES 25 A 424 ASP GLU ALA LEU ARG HIS PRO TYR ILE THR VAL TRP TYR SEQRES 26 A 424 ASP PRO ALA GLU ALA GLU ALA PRO PRO PRO GLN ILE TYR SEQRES 27 A 424 ASP ALA GLN LEU GLU GLU ARG GLU HIS ALA ILE GLU GLU SEQRES 28 A 424 TRP LYS GLU LEU ILE TYR LYS GLU VAL MET ASP TRP GLU SEQRES 29 A 424 GLU ARG SER LYS ASN GLY VAL VAL LYS ASP GLN PRO SER SEQRES 30 A 424 ASP ALA ALA VAL SER SER ASN ALA THR PRO SER GLN SER SEQRES 31 A 424 SER SER ILE ASN ASP ILE SER SER MET SER THR GLU GLN SEQRES 32 A 424 THR LEU ALA SER ASP THR ASP SER SER LEU ASP ALA SER SEQRES 33 A 424 THR GLY PRO LEU GLU GLY CYS ARG HET Y56 A 501 44 HETNAM Y56 4-(DIMETHYLAMINO)-N-{4-[(3S)-3-({4-[(8R)-2- HETNAM 2 Y56 PHENYLPYRAZOLO[1,5-A]PYRIDIN-3-YL]PYRIMIDIN-2- HETNAM 3 Y56 YL}AMINO)PYRROLIDINE-1-CARBONYL]PHENYL}BUTANAMIDE FORMUL 2 Y56 C34 H36 N8 O2 FORMUL 3 HOH *73(H2 O) HELIX 1 AA1 ASN A 63 LEU A 77 1 15 HELIX 2 AA2 LEU A 115 ILE A 119 1 5 HELIX 3 AA3 HIS A 120 GLU A 122 5 3 HELIX 4 AA4 ASP A 124 ALA A 145 1 22 HELIX 5 AA5 LYS A 153 SER A 155 5 3 HELIX 6 AA6 ALA A 193 LEU A 198 1 6 HELIX 7 AA7 ASN A 205 GLY A 221 1 17 HELIX 8 AA8 ASP A 229 GLY A 242 1 14 HELIX 9 AA9 SER A 245 LYS A 251 1 7 HELIX 10 AB1 GLN A 253 ASN A 262 1 10 HELIX 11 AB2 LYS A 270 PHE A 275 1 6 HELIX 12 AB3 PRO A 276 PHE A 280 5 5 HELIX 13 AB4 SER A 284 LEU A 302 1 19 HELIX 14 AB5 SER A 311 ARG A 317 1 7 HELIX 15 AB6 ILE A 321 TYR A 325 5 5 HELIX 16 AB7 ASP A 326 GLU A 331 1 6 HELIX 17 AB8 ALA A 340 ARG A 345 1 6 HELIX 18 AB9 ALA A 348 ASP A 362 1 15 SHEET 1 AA1 2 TYR A 11 VAL A 15 0 SHEET 2 AA1 2 THR A 19 LEU A 23 -1 O PHE A 20 N GLN A 14 SHEET 1 AA2 5 TYR A 26 GLY A 35 0 SHEET 2 AA2 5 GLY A 38 ASP A 45 -1 O ALA A 42 N LYS A 30 SHEET 3 AA2 5 ILE A 50 SER A 58 -1 O VAL A 54 N CYS A 41 SHEET 4 AA2 5 ASP A 103 GLU A 109 -1 O MET A 108 N ALA A 53 SHEET 5 AA2 5 ASN A 90 PHE A 92 -1 N PHE A 92 O TYR A 105 SHEET 1 AA3 3 ALA A 113 ASN A 114 0 SHEET 2 AA3 3 ILE A 157 VAL A 159 -1 O VAL A 159 N ALA A 113 SHEET 3 AA3 3 LEU A 165 ILE A 167 -1 O LYS A 166 N VAL A 158 LINK SG CYS A 116 C04 Y56 A 501 1555 1555 1.77 CRYST1 63.235 65.761 94.117 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010625 0.00000 TER 2886 TRP A 363 HETATM 2887 C01 Y56 A 501 19.483 21.476 2.680 1.00 62.07 C HETATM 2888 C03 Y56 A 501 19.545 22.195 4.950 1.00 75.82 C HETATM 2889 C04 Y56 A 501 20.897 22.942 4.865 1.00 72.42 C HETATM 2890 C05 Y56 A 501 21.385 23.440 6.219 1.00 68.34 C HETATM 2891 C06 Y56 A 501 21.618 25.001 6.271 1.00 74.81 C HETATM 2892 C08 Y56 A 501 21.520 25.421 8.877 1.00 65.11 C HETATM 2893 C09 Y56 A 501 21.860 26.285 9.957 1.00 60.27 C HETATM 2894 C10 Y56 A 501 21.724 25.877 11.321 1.00 56.76 C HETATM 2895 C11 Y56 A 501 21.254 24.612 11.571 1.00 54.13 C HETATM 2896 C12 Y56 A 501 21.032 23.907 12.924 1.00 50.66 C HETATM 2897 C14 Y56 A 501 23.163 24.944 14.416 1.00 45.22 C HETATM 2898 C15 Y56 A 501 23.185 25.043 16.025 1.00 48.16 C HETATM 2899 C16 Y56 A 501 22.037 24.517 16.442 1.00 43.60 C HETATM 2900 C18 Y56 A 501 21.014 23.239 18.436 1.00 41.65 C HETATM 2901 C20 Y56 A 501 20.197 21.988 20.210 1.00 37.63 C HETATM 2902 C21 Y56 A 501 18.917 22.158 19.673 1.00 30.76 C HETATM 2903 C22 Y56 A 501 18.720 22.904 18.502 1.00 37.22 C HETATM 2904 C23 Y56 A 501 17.321 23.082 17.872 1.00 40.42 C HETATM 2905 C24 Y56 A 501 17.043 23.339 16.494 1.00 43.51 C HETATM 2906 C25 Y56 A 501 17.885 23.537 15.338 1.00 44.07 C HETATM 2907 C26 Y56 A 501 17.302 23.785 14.100 1.00 46.36 C HETATM 2908 C27 Y56 A 501 15.935 23.836 13.964 1.00 49.25 C HETATM 2909 C28 Y56 A 501 15.123 23.641 15.087 1.00 47.21 C HETATM 2910 C31 Y56 A 501 16.051 22.963 18.507 1.00 42.19 C HETATM 2911 C32 Y56 A 501 15.706 22.726 19.994 1.00 37.71 C HETATM 2912 C33 Y56 A 501 16.327 23.510 20.944 1.00 36.50 C HETATM 2913 C34 Y56 A 501 16.027 23.334 22.301 1.00 38.00 C HETATM 2914 C35 Y56 A 501 15.075 22.415 22.669 1.00 37.88 C HETATM 2915 C36 Y56 A 501 14.426 21.660 21.705 1.00 35.57 C HETATM 2916 C37 Y56 A 501 14.746 21.816 20.357 1.00 39.21 C HETATM 2917 C39 Y56 A 501 21.683 23.371 15.256 1.00 43.66 C HETATM 2918 C41 Y56 A 501 20.916 23.786 10.486 1.00 63.44 C HETATM 2919 C42 Y56 A 501 21.050 24.174 9.161 1.00 68.90 C HETATM 2920 C44 Y56 A 501 17.423 21.742 3.925 1.00 65.66 C HETATM 2921 N02 Y56 A 501 18.800 22.292 3.678 1.00 68.16 N HETATM 2922 N07 Y56 A 501 21.659 25.838 7.491 1.00 71.52 N HETATM 2923 N13 Y56 A 501 21.886 24.027 14.115 1.00 47.79 N HETATM 2924 N17 Y56 A 501 22.190 23.840 17.728 1.00 38.83 N HETATM 2925 N19 Y56 A 501 21.229 22.546 19.562 1.00 39.59 N HETATM 2926 N29 Y56 A 501 15.732 23.390 16.340 1.00 44.24 N HETATM 2927 N30 Y56 A 501 15.092 23.156 17.578 1.00 42.80 N HETATM 2928 N38 Y56 A 501 19.802 23.411 17.921 1.00 38.00 N HETATM 2929 O40 Y56 A 501 20.151 23.142 12.971 1.00 50.69 O HETATM 2930 O43 Y56 A 501 21.777 25.581 5.226 1.00 79.53 O HETATM 2931 O HOH A 601 11.029 -3.576 9.405 1.00 43.46 O HETATM 2932 O HOH A 602 23.286 -8.210 18.691 1.00 59.65 O HETATM 2933 O HOH A 603 17.853 4.664 26.784 1.00 43.97 O HETATM 2934 O HOH A 604 10.891 -1.449 10.040 1.00 57.64 O HETATM 2935 O HOH A 605 12.040 14.412 1.824 1.00 40.04 O HETATM 2936 O HOH A 606 29.270 2.514 20.686 1.00 37.52 O HETATM 2937 O HOH A 607 13.909 9.450 -1.670 1.00 36.36 O HETATM 2938 O HOH A 608 26.690 -6.680 -1.293 1.00 52.07 O HETATM 2939 O HOH A 609 7.398 0.992 4.518 1.00 39.36 O HETATM 2940 O HOH A 610 24.390 -3.796 -7.022 1.00 48.51 O HETATM 2941 O HOH A 611 18.131 1.834 20.292 1.00 35.38 O HETATM 2942 O HOH A 612 24.910 29.807 38.628 1.00 52.84 O HETATM 2943 O HOH A 613 16.306 2.300 27.874 1.00 40.91 O HETATM 2944 O HOH A 614 22.743 -7.824 6.136 1.00 45.41 O HETATM 2945 O HOH A 615 9.652 1.796 -15.107 1.00 38.97 O HETATM 2946 O HOH A 616 24.476 5.204 20.176 1.00 39.35 O HETATM 2947 O HOH A 617 14.202 -1.676 -8.151 1.00 36.11 O HETATM 2948 O HOH A 618 38.343 5.334 6.406 1.00 41.60 O HETATM 2949 O HOH A 619 32.227 18.082 20.839 1.00 52.35 O HETATM 2950 O HOH A 620 -7.341 4.452 -13.920 1.00 50.43 O HETATM 2951 O HOH A 621 29.434 23.920 23.638 1.00 54.79 O HETATM 2952 O HOH A 622 19.360 13.163 24.490 1.00 38.48 O HETATM 2953 O HOH A 623 9.671 -6.647 -5.094 1.00 46.09 O HETATM 2954 O HOH A 624 19.071 36.242 30.932 1.00 56.42 O HETATM 2955 O HOH A 625 11.601 8.891 7.452 1.00 32.45 O HETATM 2956 O HOH A 626 18.925 1.833 -14.570 1.00 37.31 O HETATM 2957 O HOH A 627 18.437 -1.772 -7.155 1.00 34.89 O HETATM 2958 O HOH A 628 32.582 -2.952 12.226 1.00 33.89 O HETATM 2959 O HOH A 629 32.284 10.885 2.659 1.00 45.20 O HETATM 2960 O HOH A 630 7.931 2.721 -13.030 1.00 31.98 O HETATM 2961 O HOH A 631 -1.587 11.591 22.373 1.00 63.56 O HETATM 2962 O HOH A 632 11.711 -1.244 13.288 1.00 40.13 O HETATM 2963 O HOH A 633 26.640 -4.376 14.248 1.00 39.49 O HETATM 2964 O HOH A 634 -8.823 28.801 35.333 1.00 61.77 O HETATM 2965 O HOH A 635 32.906 -5.658 11.352 1.00 46.75 O HETATM 2966 O HOH A 636 10.289 8.173 4.011 1.00 43.71 O HETATM 2967 O HOH A 637 12.724 -1.565 10.907 1.00 40.02 O HETATM 2968 O HOH A 638 17.837 21.805 33.728 1.00 47.65 O HETATM 2969 O HOH A 639 18.860 23.588 32.247 1.00 40.58 O HETATM 2970 O HOH A 640 7.731 24.227 34.203 1.00 53.05 O HETATM 2971 O HOH A 641 25.906 8.783 21.080 1.00 37.49 O HETATM 2972 O HOH A 642 20.290 11.892 -0.353 1.00 31.31 O HETATM 2973 O HOH A 643 17.970 11.178 -1.835 1.00 28.69 O HETATM 2974 O HOH A 644 6.431 15.207 16.243 1.00 45.70 O HETATM 2975 O HOH A 645 7.585 0.635 -16.373 1.00 42.39 O HETATM 2976 O HOH A 646 26.916 5.959 20.801 1.00 40.01 O HETATM 2977 O HOH A 647 14.805 -1.651 -5.313 1.00 30.21 O HETATM 2978 O HOH A 648 20.933 6.407 26.060 1.00 40.11 O HETATM 2979 O HOH A 649 3.982 6.459 14.575 1.00 35.76 O HETATM 2980 O HOH A 650 13.354 14.782 28.278 1.00 43.10 O HETATM 2981 O HOH A 651 12.572 -3.342 -4.711 1.00 36.66 O HETATM 2982 O HOH A 652 1.460 35.701 33.566 1.00 56.52 O HETATM 2983 O HOH A 653 10.998 -4.952 -6.600 1.00 45.02 O HETATM 2984 O HOH A 654 14.451 -0.385 21.863 1.00 41.83 O HETATM 2985 O HOH A 655 28.747 22.635 27.651 1.00 43.32 O HETATM 2986 O HOH A 656 19.806 17.681 26.522 1.00 39.86 O HETATM 2987 O HOH A 657 15.805 11.150 24.632 1.00 41.72 O HETATM 2988 O HOH A 658 16.568 0.025 21.518 1.00 37.80 O HETATM 2989 O HOH A 659 19.235 12.318 -8.413 1.00 42.54 O HETATM 2990 O HOH A 660 13.425 -3.592 13.300 1.00 46.09 O HETATM 2991 O HOH A 661 11.834 12.495 4.642 1.00 41.34 O HETATM 2992 O HOH A 662 17.493 -1.961 -4.801 1.00 39.30 O HETATM 2993 O HOH A 663 11.826 -4.637 7.226 1.00 42.58 O HETATM 2994 O HOH A 664 7.038 26.990 34.281 1.00 47.11 O HETATM 2995 O HOH A 665 11.923 -10.199 3.567 1.00 57.58 O HETATM 2996 O HOH A 666 -4.487 -2.067 -9.922 1.00 65.61 O HETATM 2997 O HOH A 667 9.330 15.892 10.969 1.00 44.69 O HETATM 2998 O HOH A 668 12.900 -5.867 -7.975 1.00 53.77 O HETATM 2999 O HOH A 669 7.533 -4.802 6.347 1.00 58.26 O HETATM 3000 O HOH A 670 20.213 -9.403 5.089 1.00 68.03 O HETATM 3001 O HOH A 671 13.423 -6.942 -12.155 1.00 72.08 O HETATM 3002 O HOH A 672 25.672 -7.325 -3.478 1.00 63.06 O HETATM 3003 O HOH A 673 15.451 -6.371 -10.897 1.00 61.77 O CONECT 858 2889 CONECT 2887 2921 CONECT 2888 2889 2921 CONECT 2889 858 2888 2890 CONECT 2890 2889 2891 CONECT 2891 2890 2922 2930 CONECT 2892 2893 2919 2922 CONECT 2893 2892 2894 CONECT 2894 2893 2895 CONECT 2895 2894 2896 2918 CONECT 2896 2895 2923 2929 CONECT 2897 2898 2923 CONECT 2898 2897 2899 CONECT 2899 2898 2917 2924 CONECT 2900 2924 2925 2928 CONECT 2901 2902 2925 CONECT 2902 2901 2903 CONECT 2903 2902 2904 2928 CONECT 2904 2903 2905 2910 CONECT 2905 2904 2906 2926 CONECT 2906 2905 2907 CONECT 2907 2906 2908 CONECT 2908 2907 2909 CONECT 2909 2908 2926 CONECT 2910 2904 2911 2927 CONECT 2911 2910 2912 2916 CONECT 2912 2911 2913 CONECT 2913 2912 2914 CONECT 2914 2913 2915 CONECT 2915 2914 2916 CONECT 2916 2911 2915 CONECT 2917 2899 2923 CONECT 2918 2895 2919 CONECT 2919 2892 2918 CONECT 2920 2921 CONECT 2921 2887 2888 2920 CONECT 2922 2891 2892 CONECT 2923 2896 2897 2917 CONECT 2924 2899 2900 CONECT 2925 2900 2901 CONECT 2926 2905 2909 2927 CONECT 2927 2910 2926 CONECT 2928 2900 2903 CONECT 2929 2896 CONECT 2930 2891 MASTER 354 0 1 18 10 0 0 6 3002 1 45 33 END