HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-SEP-22 8ELO TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE PROTEIN RECEPTOR-BINDING DOMAIN TITLE 2 IN COMPLEX WITH ANTIBODY CC12.1 FAB AND NANOBODY NB-C4-225 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN, UNP RESIDUES 333-530; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY NB-C4-225; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CC12.1 FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: CC12.1 FAB LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 26 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS SYNTHETIC, NANOBODY, SARS-COV-2, CORONAVIRUS, NEUTRALIZATION, IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,I.A.WILSON REVDAT 3 30-OCT-24 8ELO 1 REMARK REVDAT 2 25-OCT-23 8ELO 1 REMARK REVDAT 1 05-JUL-23 8ELO 0 JRNL AUTH L.MISSON MINDREBO,H.LIU,G.OZOROWSKI,Q.TRAN,J.WOEHL,I.KHALEK, JRNL AUTH 2 J.M.SMITH,S.BARMAN,F.ZHAO,C.KEATING,O.LIMBO,M.VERMA,J.LIU, JRNL AUTH 3 R.L.STANFIELD,X.ZHU,H.L.TURNER,D.SOK,P.S.HUANG,D.R.BURTON, JRNL AUTH 4 A.B.WARD,I.A.WILSON,J.G.JARDINE JRNL TITL FULLY SYNTHETIC PLATFORM TO RAPIDLY GENERATE TETRAVALENT JRNL TITL 2 BISPECIFIC NANOBODY-BASED IMMUNOGLOBULINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 12120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37276407 JRNL DOI 10.1073/PNAS.2216612120 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 23278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0100 - 5.6500 0.93 2641 149 0.2192 0.2247 REMARK 3 2 5.6500 - 4.4800 0.96 2648 126 0.1808 0.1781 REMARK 3 3 4.4800 - 3.9200 0.94 2563 153 0.1833 0.2656 REMARK 3 4 3.9200 - 3.5600 0.98 2621 154 0.2215 0.2659 REMARK 3 5 3.5600 - 3.3100 0.99 2638 150 0.2318 0.2999 REMARK 3 6 3.3100 - 3.1100 0.99 2627 148 0.2525 0.2820 REMARK 3 7 3.1100 - 2.9500 0.97 2587 139 0.2764 0.3589 REMARK 3 8 2.9500 - 2.8300 0.82 2189 127 0.2849 0.3354 REMARK 3 9 2.8300 - 2.7200 0.58 1549 69 0.2939 0.3781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.9817 37.5754 0.7196 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.2814 REMARK 3 T33: 0.2713 T12: 0.0111 REMARK 3 T13: -0.0525 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 0.4836 L22: 1.3857 REMARK 3 L33: 0.5693 L12: 0.3207 REMARK 3 L13: -0.2593 L23: -0.5532 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0239 S13: 0.0724 REMARK 3 S21: -0.0162 S22: 0.0885 S23: 0.0586 REMARK 3 S31: -0.0249 S32: 0.0231 S33: -0.0447 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ELO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7KN5, 6XC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-3350, 0.2 M DI-AMMONIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.33700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.52600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.33700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.52600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.86250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.33700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.52600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.86250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.33700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.52600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 333 REMARK 465 GLY A 526 REMARK 465 PRO A 527 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 GLY A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 SER B 113 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 GLY B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 ASN A 370 CG OD1 ND2 REMARK 470 GLU B 1 CG CD OE1 OE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 SER B 17 OG REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 MET B 34 CG SD CE REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 ASN B 82A CG OD1 ND2 REMARK 470 SER B 82B OG REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 TYR B 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP B 103 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 103 CZ3 CH2 REMARK 470 GLN B 105 CG CD OE1 NE2 REMARK 470 THR B 107 OG1 CG2 REMARK 470 GLN B 108 CG CD OE1 NE2 REMARK 470 VAL B 109 CG1 CG2 REMARK 470 THR B 110 OG1 CG2 REMARK 470 SER H 128 OG REMARK 470 LYS H 129 CG CD CE NZ REMARK 470 SER H 132 OG REMARK 470 ARG H 210 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 145 CG CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER L 182 OD1 ASP L 185 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 370 65.79 -101.10 REMARK 500 ASP A 428 56.64 -94.75 REMARK 500 ASN A 487 19.43 58.59 REMARK 500 ASP H 97 -116.69 59.16 REMARK 500 SER L 30 -119.68 54.68 REMARK 500 ALA L 50 16.61 59.89 REMARK 500 ALA L 51 -9.75 71.74 REMARK 500 SER L 52 -3.78 -142.15 REMARK 500 LYS L 169 -60.92 -94.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ELO A 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 8ELO B 1 126 PDB 8ELO 8ELO 1 126 DBREF 8ELO H 1 216 PDB 8ELO 8ELO 1 216 DBREF 8ELO L 1 215 PDB 8ELO 8ELO 1 215 SEQADV 8ELO GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8ELO HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 205 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 205 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 205 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 205 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 205 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 205 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 205 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 205 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 205 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 205 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 205 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 205 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 205 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 205 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 205 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 205 LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 140 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 140 PHE THR PHE SER SER TYR ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 140 ALA PRO GLY LYS GLU ARG GLU TRP VAL CYS ALA ILE SER SEQRES 5 B 140 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 140 GLY ARG PHE THR CYS SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 140 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 140 ALA VAL TYR TYR CYS ALA ARG GLY SER PHE TYR TYR THR SEQRES 9 B 140 TYR GLY GLY SER VAL GLY PHE ASP ALA PHE ASP TYR TRP SEQRES 10 B 140 GLY GLN GLY THR GLN VAL THR VAL SER SER GLY SER GLY SEQRES 11 B 140 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 H 220 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 220 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 220 LEU THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 220 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR SEQRES 5 H 220 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 220 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 220 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 220 VAL TYR TYR CYS ALA ARG ASP LEU ASP VAL TYR GLY LEU SEQRES 9 H 220 ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 220 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 220 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 220 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 220 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 220 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 220 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 220 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 220 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 217 ASP ILE VAL MET THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 217 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 217 GLN GLY ILE SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 217 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 217 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 217 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 217 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 L 217 ASN SER TYR PRO PRO LYS PHE THR PHE GLY PRO GLY THR SEQRES 9 L 217 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 217 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 217 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 217 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 217 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 217 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 217 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 217 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 217 LYS SER PHE ASN ARG GLY GLU CYS SER HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG C8 H15 N O6 HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 TYR A 365 ASN A 370 1 6 HELIX 3 AA3 LYS A 386 LEU A 390 5 5 HELIX 4 AA4 ASP A 405 ILE A 410 5 6 HELIX 5 AA5 GLY A 416 ASN A 422 1 7 HELIX 6 AA6 GLY A 502 TYR A 505 5 4 HELIX 7 AA7 LYS B 83 THR B 87 5 5 HELIX 8 AA8 THR H 28 ASN H 32 5 5 HELIX 9 AA9 ASP H 61 LYS H 64 5 4 HELIX 10 AB1 ARG H 83 THR H 87 5 5 HELIX 11 AB2 ASP H 97 TYR H 99 5 3 HELIX 12 AB3 SER H 156 ALA H 158 5 3 HELIX 13 AB4 SER H 187 LEU H 189 5 3 HELIX 14 AB5 LYS H 201 ASN H 204 5 4 HELIX 15 AB6 GLN L 79 PHE L 83 5 5 HELIX 16 AB7 SER L 121 LYS L 126 1 6 HELIX 17 AB8 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 510 N PHE A 400 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 PHE A 374 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 2 CYS A 361 VAL A 362 0 SHEET 2 AA2 2 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 SER B 17 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA5 4 THR B 77 ASN B 82A-1 O MET B 82 N LEU B 18 SHEET 4 AA5 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AA6 2 LEU B 11 VAL B 12 0 SHEET 2 AA6 2 THR B 110 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 1 AA7 5 THR B 57 TYR B 59 0 SHEET 2 AA7 5 ARG B 45 ILE B 51 -1 N ALA B 50 O TYR B 58 SHEET 3 AA7 5 ALA B 33 GLN B 39 -1 N ARG B 38 O GLU B 46 SHEET 4 AA7 5 VAL B 89 TYR B 99 -1 O TYR B 91 N TYR B 37 SHEET 5 AA7 5 VAL B 100E ALA B 100I-1 O GLY B 100F N TYR B 98 SHEET 1 AA8 4 GLN H 3 SER H 7 0 SHEET 2 AA8 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA8 4 THR H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AA8 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA9 6 LEU H 11 ILE H 12 0 SHEET 2 AA9 6 THR H 107 VAL H 111 1 O THR H 110 N ILE H 12 SHEET 3 AA9 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA9 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA9 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA9 6 THR H 57 TYR H 59 -1 O PHE H 58 N VAL H 50 SHEET 1 AB1 4 LEU H 11 ILE H 12 0 SHEET 2 AB1 4 THR H 107 VAL H 111 1 O THR H 110 N ILE H 12 SHEET 3 AB1 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AB1 4 LEU H 100A TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AB2 4 SER H 120 LEU H 124 0 SHEET 2 AB2 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB2 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AB2 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB3 4 SER H 120 LEU H 124 0 SHEET 2 AB3 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB3 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AB3 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB4 3 THR H 151 TRP H 154 0 SHEET 2 AB4 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB4 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AB5 4 MET L 4 SER L 7 0 SHEET 2 AB5 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB5 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB5 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AB6 6 PHE L 10 ALA L 13 0 SHEET 2 AB6 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB6 6 THR L 85 LEU L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AB6 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB6 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AB6 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AB7 4 PHE L 10 ALA L 13 0 SHEET 2 AB7 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB7 4 THR L 85 LEU L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AB7 4 PHE L 96 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB8 4 SER L 114 PHE L 118 0 SHEET 2 AB8 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB8 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB8 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB9 4 ALA L 153 LEU L 154 0 SHEET 2 AB9 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB9 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AB9 4 VAL L 205 ASN L 210 -1 O PHE L 209 N TYR L 192 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 6 CYS B 49 CYS B 69 1555 1555 2.03 SSBOND 7 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 8 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 9 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 10 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -5.08 CISPEP 2 GLU H 148 PRO H 149 0 4.45 CISPEP 3 SER L 7 PRO L 8 0 -1.96 CISPEP 4 TYR L 94 PRO L 95 0 -0.70 CISPEP 5 TYR L 140 PRO L 141 0 2.78 CRYST1 88.674 143.052 147.725 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006769 0.00000