HEADER BIOSYNTHETIC PROTEIN 02-OCT-22 8EO9 TITLE THE SOLUTION STRUCTURE OF ABXF, AN ENZYME CATALYZING THE FORMATION OF TITLE 2 CHIRAL SPIROKETAL OF AN ANTIBIOTICS, (-)-ABX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 GENE: ABXF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYANA 3.98.13, ENZYME, CATALYSIS, CHIRAL SPIROKETAL, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.JIA,X.YAN,M.MOBLI,X.QU REVDAT 2 15-MAY-24 8EO9 1 REMARK REVDAT 1 03-APR-24 8EO9 0 JRNL AUTH X.JIA,X.YAN,M.MOBLI,X.QU JRNL TITL THE SOLUTION STRUCTURE OF ABXF, AN ENZYME CATALYZING THE JRNL TITL 2 FORMATION OF CHIRAL SPIROKETAL OF AN ANTIBIOTICS, (-)-ABX. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13, CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000268248. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.25 MM [U-13C; U-15N] ABXF, 5 % REMARK 210 V/V [U-100% 2H] D2O, 95 % V/V REMARK 210 H2O, 50 MM SODIUM CHLORIDE, 20 REMARK 210 MM SODIUM PHOSPHATE, 3 MM SODIUM REMARK 210 AZIDE, 5 MM DTT, 95% H2O/5% D2O; REMARK 210 1.71 MM [U-100% 15N] ABXF, 5 % V/ REMARK 210 V [U-100% 2H] D2O, 95 % V/V H2O, REMARK 210 50 MM SODIUM CHLORIDE, 20 MM REMARK 210 SODIUM PHOSPHATE, 3 MM SODIUM REMARK 210 AZIDE, 5 MM DTT, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC ALIPHATIC; 2D 1H REMARK 210 -13C HSQC AROMATIC; 2D 1H-15N REMARK 210 HSQC; 2D 1H-1H NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HN(CA)CO; 3D HCCH- REMARK 210 TOCSY; 2D HBCBCGCDCEHEGP; 2D REMARK 210 HBCBCGCDHDGP; 2D HBCBCGCCHARGP REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS VERSION 2.4.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 140.75 -178.51 REMARK 500 1 TRP A 15 134.99 -170.87 REMARK 500 1 SER A 42 43.50 -101.08 REMARK 500 1 PRO A 47 95.36 -69.75 REMARK 500 1 ASN A 67 73.75 50.57 REMARK 500 1 LEU A 72 -60.62 -96.58 REMARK 500 1 GLU A 129 103.79 -51.36 REMARK 500 1 THR A 131 -74.09 -98.47 REMARK 500 1 PRO A 135 -176.75 -69.70 REMARK 500 1 ASP A 137 -170.43 -172.85 REMARK 500 1 ARG A 144 -171.49 -179.73 REMARK 500 1 ALA A 151 42.33 -159.78 REMARK 500 1 PHE A 163 34.38 -153.16 REMARK 500 1 ASP A 166 31.76 -93.01 REMARK 500 1 PHE A 167 -78.09 -134.87 REMARK 500 1 THR A 169 59.48 -94.63 REMARK 500 1 GLU A 170 40.89 -92.53 REMARK 500 1 ARG A 178 36.17 -97.11 REMARK 500 2 ARG A 7 72.36 63.01 REMARK 500 2 THR A 14 -68.62 -124.30 REMARK 500 2 THR A 45 109.73 -57.66 REMARK 500 2 VAL A 58 -66.69 -91.24 REMARK 500 2 CYS A 59 -173.44 -171.57 REMARK 500 2 ASN A 67 73.41 51.82 REMARK 500 2 ASP A 83 80.08 -156.52 REMARK 500 2 PRO A 135 -177.94 -69.75 REMARK 500 2 ARG A 144 -174.97 -177.08 REMARK 500 2 ALA A 151 49.07 -160.57 REMARK 500 2 PHE A 163 32.19 -152.40 REMARK 500 2 THR A 173 -68.86 -100.24 REMARK 500 2 ASP A 174 -177.61 -66.35 REMARK 500 3 PRO A 47 84.53 -69.74 REMARK 500 3 LEU A 64 -62.47 -96.77 REMARK 500 3 LEU A 72 -63.53 -102.90 REMARK 500 3 THR A 131 -73.43 -119.72 REMARK 500 3 SER A 133 -177.66 -58.59 REMARK 500 3 ASP A 137 -74.95 -124.50 REMARK 500 3 ARG A 144 -169.84 -174.29 REMARK 500 3 PHE A 163 32.22 -155.97 REMARK 500 3 THR A 173 -61.46 -109.71 REMARK 500 4 ARG A 7 72.83 -113.93 REMARK 500 4 THR A 14 -74.84 -121.33 REMARK 500 4 PRO A 47 95.37 -69.72 REMARK 500 4 PRO A 70 -167.35 -69.70 REMARK 500 4 LEU A 72 -62.19 -120.60 REMARK 500 4 SER A 76 77.51 -103.43 REMARK 500 4 LEU A 99 -70.49 -64.16 REMARK 500 4 ALA A 107 -66.35 -162.27 REMARK 500 4 ASP A 137 80.44 -151.05 REMARK 500 4 ARG A 144 -178.82 -171.73 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31044 RELATED DB: BMRB REMARK 900 THE SOLUTION STRUCTURE OF ABXF, AN ENZYME CATALYZING THE FORMATION REMARK 900 OF CHIRAL SPIROKETAL OF AN ANTIBIOTICS, (-)-ABX DBREF1 8EO9 A 1 242 UNP A0A2I6B3F9_STRSQ DBREF2 8EO9 A A0A2I6B3F9 1 242 SEQADV 8EO9 GLY A -2 UNP A0A2I6B3F EXPRESSION TAG SEQADV 8EO9 SER A -1 UNP A0A2I6B3F EXPRESSION TAG SEQADV 8EO9 HIS A 0 UNP A0A2I6B3F EXPRESSION TAG SEQRES 1 A 245 GLY SER HIS MET SER HIS ASP ALA VAL ARG PRO ALA PRO SEQRES 2 A 245 GLY GLU PRO THR TRP VAL ASP LEU LEU THR PRO ASP ARG SEQRES 3 A 245 GLY ALA ALA LEU GLN PHE TYR SER ALA LEU PHE GLY TRP SEQRES 4 A 245 GLU PHE SER THR THR SER ASP GLY THR SER PRO TYR THR SEQRES 5 A 245 MET CYS ARG LEU ARG GLY ARG GLU VAL CYS SER ILE GLY SEQRES 6 A 245 ASP LEU GLY GLU ASN PRO GLY PRO ALA LEU GLY GLY TRP SEQRES 7 A 245 SER SER TYR LEU SER VAL ASP ASP ALA ASP ALA ALA ALA SEQRES 8 A 245 ALA ALA VAL PRO GLU LEU GLY GLY ALA VAL LEU LEU GLY SEQRES 9 A 245 PRO ILE ASP ILE LEU ALA GLN GLY ARG MET LEU LEU ALA SEQRES 10 A 245 GLY ASP PRO SER GLY HIS ARG VAL GLY LEU TRP GLN ALA SEQRES 11 A 245 LYS GLU HIS THR GLY SER GLY PRO ASP ASP GLY ILE GLY SEQRES 12 A 245 ALA TYR THR ARG SER GLU LEU LEU THR GLY ALA SER ALA SEQRES 13 A 245 THR ASP GLY ALA PHE TYR ARG GLY LEU PHE GLY ALA ASP SEQRES 14 A 245 PHE ALA THR GLU SER GLY THR ASP GLY GLY GLY ARG ARG SEQRES 15 A 245 ALA ALA ILE ARG GLN VAL GLY PRO ALA ALA PRO SER GLY SEQRES 16 A 245 TRP TYR PRO CYS PHE ARG ALA GLN GLU SER ALA VAL PRO SEQRES 17 A 245 ALA ALA VAL MET LEU GLY ALA SER VAL LEU LEU ARG TYR SEQRES 18 A 245 ASP CYS PRO ASP GLY PRO ALA VAL VAL VAL SER ALA PRO SEQRES 19 A 245 GLY GLY GLU VAL PHE THR LEU LEU LEU THR ASP HELIX 1 AA1 ASP A 22 PHE A 34 1 13 HELIX 2 AA2 ASP A 83 GLY A 95 1 13 HELIX 3 AA3 ALA A 151 GLY A 164 1 14 HELIX 4 AA4 SER A 202 GLY A 211 1 10 SHEET 1 AA1 8 GLU A 37 PHE A 38 0 SHEET 2 AA1 8 MET A 50 ARG A 52 -1 O ARG A 52 N GLU A 37 SHEET 3 AA1 8 GLU A 57 GLY A 62 -1 O VAL A 58 N CYS A 51 SHEET 4 AA1 8 PRO A 13 LEU A 19 1 N LEU A 18 O GLY A 62 SHEET 5 AA1 8 TRP A 75 VAL A 81 -1 O SER A 76 N ASP A 17 SHEET 6 AA1 8 LEU A 124 GLN A 126 1 O TRP A 125 N LEU A 79 SHEET 7 AA1 8 GLY A 109 MET A 111 -1 N ARG A 110 O GLN A 126 SHEET 8 AA1 8 ILE A 103 ILE A 105 -1 N ILE A 105 O GLY A 109 SHEET 1 AA2 6 ALA A 181 GLN A 184 0 SHEET 2 AA2 6 TYR A 142 THR A 149 1 N LEU A 147 O ARG A 183 SHEET 3 AA2 6 TYR A 194 ALA A 199 -1 O CYS A 196 N ARG A 144 SHEET 4 AA2 6 VAL A 235 LEU A 240 1 O LEU A 239 N ALA A 199 SHEET 5 AA2 6 ALA A 225 SER A 229 -1 N VAL A 226 O LEU A 238 SHEET 6 AA2 6 SER A 213 TYR A 218 -1 N LEU A 216 O VAL A 227 CISPEP 1 GLY A 101 PRO A 102 1 0.01 CISPEP 2 GLY A 101 PRO A 102 2 0.03 CISPEP 3 GLY A 101 PRO A 102 3 0.07 CISPEP 4 GLY A 101 PRO A 102 4 0.08 CISPEP 5 GLY A 101 PRO A 102 5 0.03 CISPEP 6 GLY A 101 PRO A 102 6 0.05 CISPEP 7 GLY A 101 PRO A 102 7 0.09 CISPEP 8 GLY A 101 PRO A 102 8 0.06 CISPEP 9 GLY A 101 PRO A 102 9 0.07 CISPEP 10 GLY A 101 PRO A 102 10 0.14 CISPEP 11 GLY A 101 PRO A 102 11 0.07 CISPEP 12 GLY A 101 PRO A 102 12 0.09 CISPEP 13 GLY A 101 PRO A 102 13 0.05 CISPEP 14 GLY A 101 PRO A 102 14 -0.02 CISPEP 15 GLY A 101 PRO A 102 15 0.04 CISPEP 16 GLY A 101 PRO A 102 16 0.07 CISPEP 17 GLY A 101 PRO A 102 17 -0.05 CISPEP 18 GLY A 101 PRO A 102 18 0.04 CISPEP 19 GLY A 101 PRO A 102 19 0.06 CISPEP 20 GLY A 101 PRO A 102 20 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1