HEADER DE NOVO PROTEIN 04-OCT-22 8EOV TITLE PRECISELY PATTERNED NANOFIBERS MADE FROM EXTENDABLE PROTEIN TITLE 2 MULTIPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: C2HR1_4R; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN, NANOFIBERS, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,N.P.BETHEL REVDAT 3 20-DEC-23 8EOV 1 JRNL REVDAT 2 20-SEP-23 8EOV 1 JRNL REVDAT 1 16-AUG-23 8EOV 0 JRNL AUTH N.P.BETHEL,A.J.BORST,F.PARMEGGIANI,M.J.BICK,T.J.BRUNETTE, JRNL AUTH 2 H.NGUYEN,A.KANG,A.K.BERA,L.CARTER,M.C.MIRANDA,R.D.KIBLER, JRNL AUTH 3 M.LAMB,X.LI,B.SANKARAN,D.BAKER JRNL TITL PRECISELY PATTERNED NANOFIBRES MADE FROM EXTENDABLE PROTEIN JRNL TITL 2 MULTIPLEXES. JRNL REF NAT.CHEM. V. 15 1664 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37667012 JRNL DOI 10.1038/S41557-023-01314-X REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5600 - 3.8300 0.99 1516 158 0.1764 0.1946 REMARK 3 2 3.8300 - 3.0400 1.00 1435 144 0.1882 0.1933 REMARK 3 3 3.0400 - 2.6600 1.00 1438 145 0.2010 0.2091 REMARK 3 4 2.6600 - 2.4100 1.00 1417 139 0.2008 0.2144 REMARK 3 5 2.4100 - 2.2400 1.00 1381 140 0.1841 0.2630 REMARK 3 6 2.2400 - 2.1100 1.00 1408 140 0.2037 0.2372 REMARK 3 7 2.1100 - 2.0000 1.00 1389 145 0.2134 0.2837 REMARK 3 8 2.0000 - 1.9200 0.99 1380 143 0.2537 0.2694 REMARK 3 9 1.9200 - 1.8400 1.00 1372 140 0.2728 0.3304 REMARK 3 10 1.8400 - 1.7800 1.00 1378 141 0.2771 0.3196 REMARK 3 11 1.7800 - 1.7200 1.00 1384 138 0.3337 0.3898 REMARK 3 12 1.7200 - 1.6700 1.00 1371 140 0.3550 0.3685 REMARK 3 13 1.6700 - 1.6300 1.00 1354 140 0.3730 0.3782 REMARK 3 14 1.6300 - 1.5900 1.00 1374 142 0.3956 0.3795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.252 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1215 REMARK 3 ANGLE : 0.623 1643 REMARK 3 CHIRALITY : 0.043 202 REMARK 3 PLANARITY : 0.005 205 REMARK 3 DIHEDRAL : 14.716 499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -28.8784 18.4155 6.7861 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.3231 REMARK 3 T33: 0.1784 T12: 0.1039 REMARK 3 T13: 0.0060 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 4.0507 L22: 1.9692 REMARK 3 L33: 2.9166 L12: 1.3101 REMARK 3 L13: 0.0129 L23: 0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0088 S13: -0.2579 REMARK 3 S21: 0.0057 S22: -0.1045 S23: -0.1714 REMARK 3 S31: 0.2573 S32: 0.3740 S33: 0.0880 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 42.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01340 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 1.03800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DESIGNED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 3.2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.14067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.07033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.07033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.14067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 TRP A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 DBREF 8EOV A 1 146 PDB 8EOV 8EOV 1 146 SEQRES 1 A 146 MET ASP TYR GLN GLU ALA LEU LEU GLU LEU ILE GLU ARG SEQRES 2 A 146 LEU LEU ARG LYS LEU ASN VAL ASP PRO ARG ASP ILE LYS SEQRES 3 A 146 ARG ILE GLU GLN GLN LEU ARG ASP LEU ASP ILE TYR GLN SEQRES 4 A 146 ILE ALA LEU LEU LEU LEU ILE ILE LEU LEU LEU ARG LYS SEQRES 5 A 146 LEU ASN VAL ASP PRO ARG ASP ILE LYS ARG ILE LEU GLN SEQRES 6 A 146 GLN LEU ILE ASP LEU ASP ILE TYR GLN ILE ALA LEU LEU SEQRES 7 A 146 LEU LEU ILE ILE LEU LEU LEU HIS LYS LEU ASN VAL ASP SEQRES 8 A 146 PRO ARG ASP ILE LYS ARG ILE LEU GLN GLN LEU ILE ASP SEQRES 9 A 146 LEU ASP ILE GLU GLN ILE ALA GLU LEU LEU LEU ARG ILE SEQRES 10 A 146 LEU GLU LEU ARG LYS ARG ASN GLU ASP PRO ARG ASP ILE SEQRES 11 A 146 LYS ARG GLU LEU GLN GLN LEU ILE ASP ASP ASP GLY SER SEQRES 12 A 146 TRP LEU GLU HET PO4 A 201 5 HET PO4 A 202 5 HET PO4 A 203 5 HET PO4 A 204 5 HET PO4 A 205 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 5(O4 P 3-) FORMUL 7 HOH *42(H2 O) HELIX 1 AA1 ASP A 2 LEU A 18 1 17 HELIX 2 AA2 ASP A 21 ARG A 33 1 13 HELIX 3 AA3 ASP A 36 LEU A 53 1 18 HELIX 4 AA4 ASP A 56 ILE A 68 1 13 HELIX 5 AA5 ASP A 71 LEU A 88 1 18 HELIX 6 AA6 ASP A 91 ILE A 103 1 13 HELIX 7 AA7 ASP A 106 ARG A 123 1 18 HELIX 8 AA8 ASP A 126 ASP A 140 1 15 CRYST1 49.140 49.140 111.211 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020350 0.011749 0.000000 0.00000 SCALE2 0.000000 0.023498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008992 0.00000