HEADER DE NOVO PROTEIN 04-OCT-22 8EOZ TITLE PRECISELY PATTERNED NANOFIBERS MADE FROM EXTENDABLE PROTEIN TITLE 2 MULTIPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: C3HR3_4R; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN, NANOFIBERS, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,N.P.BETHEL,A.KANG REVDAT 3 20-DEC-23 8EOZ 1 JRNL REVDAT 2 20-SEP-23 8EOZ 1 JRNL REVDAT 1 16-AUG-23 8EOZ 0 JRNL AUTH N.P.BETHEL,A.J.BORST,F.PARMEGGIANI,M.J.BICK,T.J.BRUNETTE, JRNL AUTH 2 H.NGUYEN,A.KANG,A.K.BERA,L.CARTER,M.C.MIRANDA,R.D.KIBLER, JRNL AUTH 3 M.LAMB,X.LI,B.SANKARAN,D.BAKER JRNL TITL PRECISELY PATTERNED NANOFIBRES MADE FROM EXTENDABLE PROTEIN JRNL TITL 2 MULTIPLEXES. JRNL REF NAT.CHEM. V. 15 1664 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37667012 JRNL DOI 10.1038/S41557-023-01314-X REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 4527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.140 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3500 - 4.3300 0.96 1382 156 0.2009 0.2480 REMARK 3 2 4.3300 - 3.1000 1.00 1454 164 0.2393 0.3076 REMARK 3 3 3.1000 - 3.0000 0.85 1232 139 0.2757 0.3200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.935 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1900 REMARK 3 ANGLE : 0.435 2548 REMARK 3 CHIRALITY : 0.035 292 REMARK 3 PLANARITY : 0.002 323 REMARK 3 DIHEDRAL : 13.527 757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.6260 -9.1720 -0.9550 REMARK 3 T TENSOR REMARK 3 T11: -0.4128 T22: 0.1186 REMARK 3 T33: 0.0264 T12: 0.2237 REMARK 3 T13: -0.1190 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 0.0959 L22: 0.2132 REMARK 3 L33: 0.1601 L12: 0.0862 REMARK 3 L13: 0.0132 L23: 0.0742 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0860 S13: -0.2013 REMARK 3 S21: 0.3897 S22: -0.0456 S23: -0.3238 REMARK 3 S31: 0.4984 S32: 0.3360 S33: 0.0571 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4528 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 1.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DESIGNED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE.HCL PH 8.0 15% (W/V) REMARK 280 MPD; 5% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.11250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.69486 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.34600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 34.11250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.69486 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.34600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 34.11250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.69486 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.34600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.38972 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.69200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.38972 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.69200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.38972 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.69200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 230 REMARK 465 SER B 231 REMARK 465 TRP B 232 REMARK 465 LEU B 233 REMARK 465 GLU B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 50 -82.27 -84.15 REMARK 500 GLU B 51 -53.27 64.23 REMARK 500 LYS B 98 31.95 72.16 REMARK 500 LYS B 99 41.62 -105.85 REMARK 500 GLU B 197 41.77 -78.23 REMARK 500 ASN B 217 23.63 -79.11 REMARK 500 LYS B 228 6.88 -68.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 8EOZ B 1 240 PDB 8EOZ 8EOZ 1 240 SEQRES 1 B 240 MET GLU GLU VAL LYS LYS LYS LEU GLU GLU VAL TRP LYS SEQRES 2 B 240 LYS ALA LYS GLU ASP ALA GLY ASP ASN GLU LYS PHE LEU SEQRES 3 B 240 GLU LEU LEU GLU LEU ILE LEU GLU ASN PRO GLU ILE LEU SEQRES 4 B 240 GLU ILE LEU GLU LEU TYR VAL PHE ILE ASN LYS GLU ASP SEQRES 5 B 240 VAL VAL GLU LYS LEU PHE ASP VAL ILE LYS LYS ALA VAL SEQRES 6 B 240 GLU ASP ALA GLY ASP ASN GLU LYS PHE LEU GLU LEU LEU SEQRES 7 B 240 LYS GLU MET LEU SER ASN PRO GLU ILE PHE GLU ILE LEU SEQRES 8 B 240 LEU GLU TYR VAL TYR ILE LYS LYS GLU ASP VAL VAL GLU SEQRES 9 B 240 LYS LEU PHE GLU VAL ILE LYS GLN ALA VAL GLU ASP ALA SEQRES 10 B 240 GLY ASP ASN PRO VAL PHE LEU LYS LEU LEU LYS LYS MET SEQRES 11 B 240 ILE SER ASN PRO GLU ILE PHE GLU ILE LEU LEU GLU TYR SEQRES 12 B 240 VAL TYR ILE GLY LYS GLU GLU VAL VAL LYS LYS PHE PHE SEQRES 13 B 240 GLU VAL ILE LYS GLN ALA VAL GLU ASP ALA GLY ASN ASN SEQRES 14 B 240 PRO ILE PHE LEU LYS LEU LEU GLU LYS ILE ILE LEU ASP SEQRES 15 B 240 PRO GLU ARG PHE LYS LYS LEU LEU GLU LYS VAL GLU VAL SEQRES 16 B 240 GLY GLU GLU GLU GLU VAL LYS ALA GLU PHE LYS GLU ILE SEQRES 17 B 240 LYS LYS ALA VAL GLU GLU ALA GLY ASN ASP PRO ILE LYS SEQRES 18 B 240 LEU LYS GLU LEU GLU GLU LYS LEU GLY SER TRP LEU GLU SEQRES 19 B 240 HIS HIS HIS HIS HIS HIS HELIX 1 AA1 GLU B 3 ALA B 19 1 17 HELIX 2 AA2 ASN B 22 ASN B 35 1 14 HELIX 3 AA3 ASN B 35 ILE B 48 1 14 HELIX 4 AA4 GLU B 51 GLY B 69 1 19 HELIX 5 AA5 ASN B 71 ASN B 84 1 14 HELIX 6 AA6 ASN B 84 ILE B 97 1 14 HELIX 7 AA7 LYS B 99 GLY B 118 1 20 HELIX 8 AA8 ASN B 120 SER B 132 1 13 HELIX 9 AA9 ASN B 133 GLY B 147 1 15 HELIX 10 AB1 GLU B 149 ASP B 165 1 17 HELIX 11 AB2 ASN B 169 LEU B 181 1 13 HELIX 12 AB3 ASP B 182 GLY B 196 1 15 HELIX 13 AB4 GLU B 199 GLY B 216 1 18 HELIX 14 AB5 ASP B 218 LYS B 228 1 11 CRYST1 68.225 68.225 139.038 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014657 0.008462 0.000000 0.00000 SCALE2 0.000000 0.016925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007192 0.00000