data_8EQF
#
_entry.id 8EQF
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8EQF pdb_00008eqf 10.2210/pdb8eqf/pdb
WWPDB D_1000269132 ? ?
EMDB EMD-28537 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2023-10-11
2 'Structure model' 1 1 2024-04-24
3 'Structure model' 1 2 2024-10-09
4 'Structure model' 1 3 2024-10-16
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Structure summary'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' em_admin
4 3 'Structure model' pdbx_entry_details
5 3 'Structure model' pdbx_modification_feature
6 4 'Structure model' citation_author
7 4 'Structure model' em_admin
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.journal_volume'
6 2 'Structure model' '_citation.page_first'
7 2 'Structure model' '_citation.page_last'
8 2 'Structure model' '_citation.pdbx_database_id_DOI'
9 2 'Structure model' '_citation.pdbx_database_id_PubMed'
10 2 'Structure model' '_citation.title'
11 2 'Structure model' '_citation.year'
12 3 'Structure model' '_em_admin.last_update'
13 3 'Structure model' '_pdbx_entry_details.has_protein_modification'
14 4 'Structure model' '_citation_author.name'
15 4 'Structure model' '_em_admin.last_update'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 8EQF
_pdbx_database_status.recvd_initial_deposition_date 2022-10-07
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
EMDB 'cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 10A3' EMD-28537 'associated EM volume'
EMDB 'global maps' EMD-29227 'other EM volume'
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email goran.bajic@mssm.edu
_pdbx_contact_author.name_first Goran
_pdbx_contact_author.name_last Bajic
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0003-0480-4324
#
_audit_author.name 'Bajic, G.'
_audit_author.pdbx_ordinal 1
_audit_author.identifier_ORCID 0000-0003-0480-4324
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Mbio
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2150-7511
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 15
_citation.language ?
_citation.page_first e0247723
_citation.page_last e0247723
_citation.title
'An in vitro experimental pipeline to characterize the epitope of a SARS-CoV-2 neutralizing antibody.'
_citation.year 2024
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1128/mbio.02477-23
_citation.pdbx_database_id_PubMed 38054729
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Atanasoff, K.E.' 1 0000-0002-1025-4640
primary 'Brambilla, L.' 2 ?
primary 'Adelsberg, D.C.' 3 ?
primary 'Kowdle, S.' 4 ?
primary 'Stevens, C.S.' 5 ?
primary 'Slamanig, S.' 6 ?
primary 'Hung, C.T.' 7 ?
primary 'Fu, Y.' 8 ?
primary 'Lim, R.' 9 ?
primary 'Tran, L.' 10 ?
primary 'Allen, R.' 11 ?
primary 'Sun, W.' 12 0000-0002-2435-5047
primary 'Duty, J.A.' 13 ?
primary 'Bajic, G.' 14 0000-0003-0480-4324
primary 'Lee, B.' 15 0000-0003-0760-1709
primary 'Tortorella, D.' 16 0000-0003-0961-3535
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Spike protein S1' 21776.381 1 ? ? ? ?
2 polymer man 'Fab heavy chain' 13956.542 1 ? ? ? ?
3 polymer man 'Fab light chain' 11619.900 1 ? ? ? ?
4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP
GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL
QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
;
;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP
GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL
QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
;
A ?
2 'polypeptide(L)' no no
;QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMNWVRQAPGKGLEWVAIIWYDGNNKYYVDSVKGRFTISRDNSKNTLY
LQMNSLRAEDTAVYYCARKDYSKTYYGYYFDYWGQGTLVTVSS
;
;QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMNWVRQAPGKGLEWVAIIWYDGNNKYYVDSVKGRFTISRDNSKNTLY
LQMNSLRAEDTAVYYCARKDYSKTYYGYYFDYWGQGTLVTVSS
;
H ?
3 'polypeptide(L)' no no
;DIQMTQSPSSLSASVGDRVTITCRASQSIHSFLNWYQQKPGKPPNLLIYAASSLQSGLPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQSYITPPTFGHGTKVEIK
;
;DIQMTQSPSSLSASVGDRVTITCRASQSIHSFLNWYQQKPGKPPNLLIYAASSLQSGLPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQSYITPPTFGHGTKVEIK
;
L ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 ASN n
1 3 LEU n
1 4 CYS n
1 5 PRO n
1 6 PHE n
1 7 GLY n
1 8 GLU n
1 9 VAL n
1 10 PHE n
1 11 ASN n
1 12 ALA n
1 13 THR n
1 14 ARG n
1 15 PHE n
1 16 ALA n
1 17 SER n
1 18 VAL n
1 19 TYR n
1 20 ALA n
1 21 TRP n
1 22 ASN n
1 23 ARG n
1 24 LYS n
1 25 ARG n
1 26 ILE n
1 27 SER n
1 28 ASN n
1 29 CYS n
1 30 VAL n
1 31 ALA n
1 32 ASP n
1 33 TYR n
1 34 SER n
1 35 VAL n
1 36 LEU n
1 37 TYR n
1 38 ASN n
1 39 SER n
1 40 ALA n
1 41 SER n
1 42 PHE n
1 43 SER n
1 44 THR n
1 45 PHE n
1 46 LYS n
1 47 CYS n
1 48 TYR n
1 49 GLY n
1 50 VAL n
1 51 SER n
1 52 PRO n
1 53 THR n
1 54 LYS n
1 55 LEU n
1 56 ASN n
1 57 ASP n
1 58 LEU n
1 59 CYS n
1 60 PHE n
1 61 THR n
1 62 ASN n
1 63 VAL n
1 64 TYR n
1 65 ALA n
1 66 ASP n
1 67 SER n
1 68 PHE n
1 69 VAL n
1 70 ILE n
1 71 ARG n
1 72 GLY n
1 73 ASP n
1 74 GLU n
1 75 VAL n
1 76 ARG n
1 77 GLN n
1 78 ILE n
1 79 ALA n
1 80 PRO n
1 81 GLY n
1 82 GLN n
1 83 THR n
1 84 GLY n
1 85 LYS n
1 86 ILE n
1 87 ALA n
1 88 ASP n
1 89 TYR n
1 90 ASN n
1 91 TYR n
1 92 LYS n
1 93 LEU n
1 94 PRO n
1 95 ASP n
1 96 ASP n
1 97 PHE n
1 98 THR n
1 99 GLY n
1 100 CYS n
1 101 VAL n
1 102 ILE n
1 103 ALA n
1 104 TRP n
1 105 ASN n
1 106 SER n
1 107 ASN n
1 108 ASN n
1 109 LEU n
1 110 ASP n
1 111 SER n
1 112 LYS n
1 113 VAL n
1 114 GLY n
1 115 GLY n
1 116 ASN n
1 117 TYR n
1 118 ASN n
1 119 TYR n
1 120 LEU n
1 121 TYR n
1 122 ARG n
1 123 LEU n
1 124 PHE n
1 125 ARG n
1 126 LYS n
1 127 SER n
1 128 ASN n
1 129 LEU n
1 130 LYS n
1 131 PRO n
1 132 PHE n
1 133 GLU n
1 134 ARG n
1 135 ASP n
1 136 ILE n
1 137 SER n
1 138 THR n
1 139 GLU n
1 140 ILE n
1 141 TYR n
1 142 GLN n
1 143 ALA n
1 144 GLY n
1 145 SER n
1 146 THR n
1 147 PRO n
1 148 CYS n
1 149 ASN n
1 150 GLY n
1 151 VAL n
1 152 GLU n
1 153 GLY n
1 154 PHE n
1 155 ASN n
1 156 CYS n
1 157 TYR n
1 158 PHE n
1 159 PRO n
1 160 LEU n
1 161 GLN n
1 162 SER n
1 163 TYR n
1 164 GLY n
1 165 PHE n
1 166 GLN n
1 167 PRO n
1 168 THR n
1 169 ASN n
1 170 GLY n
1 171 VAL n
1 172 GLY n
1 173 TYR n
1 174 GLN n
1 175 PRO n
1 176 TYR n
1 177 ARG n
1 178 VAL n
1 179 VAL n
1 180 VAL n
1 181 LEU n
1 182 SER n
1 183 PHE n
1 184 GLU n
1 185 LEU n
1 186 LEU n
1 187 HIS n
1 188 ALA n
1 189 PRO n
1 190 ALA n
1 191 THR n
1 192 VAL n
1 193 CYS n
1 194 GLY n
2 1 GLN n
2 2 VAL n
2 3 GLN n
2 4 LEU n
2 5 VAL n
2 6 GLU n
2 7 SER n
2 8 GLY n
2 9 GLY n
2 10 GLY n
2 11 VAL n
2 12 VAL n
2 13 GLN n
2 14 PRO n
2 15 GLY n
2 16 ARG n
2 17 SER n
2 18 LEU n
2 19 ARG n
2 20 LEU n
2 21 SER n
2 22 CYS n
2 23 ALA n
2 24 ALA n
2 25 SER n
2 26 GLY n
2 27 PHE n
2 28 THR n
2 29 PHE n
2 30 SER n
2 31 SER n
2 32 TYR n
2 33 GLY n
2 34 MET n
2 35 ASN n
2 36 TRP n
2 37 VAL n
2 38 ARG n
2 39 GLN n
2 40 ALA n
2 41 PRO n
2 42 GLY n
2 43 LYS n
2 44 GLY n
2 45 LEU n
2 46 GLU n
2 47 TRP n
2 48 VAL n
2 49 ALA n
2 50 ILE n
2 51 ILE n
2 52 TRP n
2 53 TYR n
2 54 ASP n
2 55 GLY n
2 56 ASN n
2 57 ASN n
2 58 LYS n
2 59 TYR n
2 60 TYR n
2 61 VAL n
2 62 ASP n
2 63 SER n
2 64 VAL n
2 65 LYS n
2 66 GLY n
2 67 ARG n
2 68 PHE n
2 69 THR n
2 70 ILE n
2 71 SER n
2 72 ARG n
2 73 ASP n
2 74 ASN n
2 75 SER n
2 76 LYS n
2 77 ASN n
2 78 THR n
2 79 LEU n
2 80 TYR n
2 81 LEU n
2 82 GLN n
2 83 MET n
2 84 ASN n
2 85 SER n
2 86 LEU n
2 87 ARG n
2 88 ALA n
2 89 GLU n
2 90 ASP n
2 91 THR n
2 92 ALA n
2 93 VAL n
2 94 TYR n
2 95 TYR n
2 96 CYS n
2 97 ALA n
2 98 ARG n
2 99 LYS n
2 100 ASP n
2 101 TYR n
2 102 SER n
2 103 LYS n
2 104 THR n
2 105 TYR n
2 106 TYR n
2 107 GLY n
2 108 TYR n
2 109 TYR n
2 110 PHE n
2 111 ASP n
2 112 TYR n
2 113 TRP n
2 114 GLY n
2 115 GLN n
2 116 GLY n
2 117 THR n
2 118 LEU n
2 119 VAL n
2 120 THR n
2 121 VAL n
2 122 SER n
2 123 SER n
3 1 ASP n
3 2 ILE n
3 3 GLN n
3 4 MET n
3 5 THR n
3 6 GLN n
3 7 SER n
3 8 PRO n
3 9 SER n
3 10 SER n
3 11 LEU n
3 12 SER n
3 13 ALA n
3 14 SER n
3 15 VAL n
3 16 GLY n
3 17 ASP n
3 18 ARG n
3 19 VAL n
3 20 THR n
3 21 ILE n
3 22 THR n
3 23 CYS n
3 24 ARG n
3 25 ALA n
3 26 SER n
3 27 GLN n
3 28 SER n
3 29 ILE n
3 30 HIS n
3 31 SER n
3 32 PHE n
3 33 LEU n
3 34 ASN n
3 35 TRP n
3 36 TYR n
3 37 GLN n
3 38 GLN n
3 39 LYS n
3 40 PRO n
3 41 GLY n
3 42 LYS n
3 43 PRO n
3 44 PRO n
3 45 ASN n
3 46 LEU n
3 47 LEU n
3 48 ILE n
3 49 TYR n
3 50 ALA n
3 51 ALA n
3 52 SER n
3 53 SER n
3 54 LEU n
3 55 GLN n
3 56 SER n
3 57 GLY n
3 58 LEU n
3 59 PRO n
3 60 SER n
3 61 ARG n
3 62 PHE n
3 63 SER n
3 64 GLY n
3 65 SER n
3 66 GLY n
3 67 SER n
3 68 GLY n
3 69 THR n
3 70 ASP n
3 71 PHE n
3 72 THR n
3 73 LEU n
3 74 THR n
3 75 ILE n
3 76 SER n
3 77 SER n
3 78 LEU n
3 79 GLN n
3 80 PRO n
3 81 GLU n
3 82 ASP n
3 83 PHE n
3 84 ALA n
3 85 THR n
3 86 TYR n
3 87 TYR n
3 88 CYS n
3 89 GLN n
3 90 GLN n
3 91 SER n
3 92 TYR n
3 93 ILE n
3 94 THR n
3 95 PRO n
3 96 PRO n
3 97 THR n
3 98 PHE n
3 99 GLY n
3 100 HIS n
3 101 GLY n
3 102 THR n
3 103 LYS n
3 104 VAL n
3 105 GLU n
3 106 ILE n
3 107 LYS n
#
loop_
_entity_src_gen.entity_id
_entity_src_gen.pdbx_src_id
_entity_src_gen.pdbx_alt_source_flag
_entity_src_gen.pdbx_seq_type
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_genus
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.gene_src_species
_entity_src_gen.gene_src_strain
_entity_src_gen.gene_src_tissue
_entity_src_gen.gene_src_tissue_fraction
_entity_src_gen.gene_src_details
_entity_src_gen.pdbx_gene_src_fragment
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_variant
_entity_src_gen.pdbx_gene_src_cell_line
_entity_src_gen.pdbx_gene_src_atcc
_entity_src_gen.pdbx_gene_src_organ
_entity_src_gen.pdbx_gene_src_organelle
_entity_src_gen.pdbx_gene_src_cell
_entity_src_gen.pdbx_gene_src_cellular_location
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_entity_src_gen.host_org_genus
_entity_src_gen.pdbx_host_org_gene
_entity_src_gen.pdbx_host_org_organ
_entity_src_gen.host_org_species
_entity_src_gen.pdbx_host_org_tissue
_entity_src_gen.pdbx_host_org_tissue_fraction
_entity_src_gen.pdbx_host_org_strain
_entity_src_gen.pdbx_host_org_variant
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_atcc
_entity_src_gen.pdbx_host_org_culture_collection
_entity_src_gen.pdbx_host_org_cell
_entity_src_gen.pdbx_host_org_organelle
_entity_src_gen.pdbx_host_org_cellular_location
_entity_src_gen.pdbx_host_org_vector_type
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.host_org_details
_entity_src_gen.expression_system_id
_entity_src_gen.plasmid_name
_entity_src_gen.plasmid_details
_entity_src_gen.pdbx_description
1 1 sample 'Biological sequence' 1 194 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ?
? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
2 1 sample 'Biological sequence' 1 123 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ?
? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
3 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ?
? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
#
_pdbx_entity_branch.entity_id 4
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 4
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 NAG
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 NAG
_pdbx_entity_branch_link.atom_id_2 O4
_pdbx_entity_branch_link.leaving_atom_id_2 HO4
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 326 326 THR THR A . n
A 1 2 ASN 2 327 327 ASN ASN A . n
A 1 3 LEU 3 328 328 LEU LEU A . n
A 1 4 CYS 4 329 329 CYS CYS A . n
A 1 5 PRO 5 330 330 PRO PRO A . n
A 1 6 PHE 6 331 331 PHE PHE A . n
A 1 7 GLY 7 332 332 GLY GLY A . n
A 1 8 GLU 8 333 333 GLU GLU A . n
A 1 9 VAL 9 334 334 VAL VAL A . n
A 1 10 PHE 10 335 335 PHE PHE A . n
A 1 11 ASN 11 336 336 ASN ASN A . n
A 1 12 ALA 12 337 337 ALA ALA A . n
A 1 13 THR 13 338 338 THR THR A . n
A 1 14 ARG 14 339 339 ARG ARG A . n
A 1 15 PHE 15 340 340 PHE PHE A . n
A 1 16 ALA 16 341 341 ALA ALA A . n
A 1 17 SER 17 342 342 SER SER A . n
A 1 18 VAL 18 343 343 VAL VAL A . n
A 1 19 TYR 19 344 344 TYR TYR A . n
A 1 20 ALA 20 345 345 ALA ALA A . n
A 1 21 TRP 21 346 346 TRP TRP A . n
A 1 22 ASN 22 347 347 ASN ASN A . n
A 1 23 ARG 23 348 348 ARG ARG A . n
A 1 24 LYS 24 349 349 LYS LYS A . n
A 1 25 ARG 25 350 350 ARG ARG A . n
A 1 26 ILE 26 351 351 ILE ILE A . n
A 1 27 SER 27 352 352 SER SER A . n
A 1 28 ASN 28 353 353 ASN ASN A . n
A 1 29 CYS 29 354 354 CYS CYS A . n
A 1 30 VAL 30 355 355 VAL VAL A . n
A 1 31 ALA 31 356 356 ALA ALA A . n
A 1 32 ASP 32 357 357 ASP ASP A . n
A 1 33 TYR 33 358 358 TYR TYR A . n
A 1 34 SER 34 359 359 SER SER A . n
A 1 35 VAL 35 360 360 VAL VAL A . n
A 1 36 LEU 36 361 361 LEU LEU A . n
A 1 37 TYR 37 362 362 TYR TYR A . n
A 1 38 ASN 38 363 363 ASN ASN A . n
A 1 39 SER 39 364 364 SER SER A . n
A 1 40 ALA 40 365 365 ALA ALA A . n
A 1 41 SER 41 366 366 SER SER A . n
A 1 42 PHE 42 367 367 PHE PHE A . n
A 1 43 SER 43 368 368 SER SER A . n
A 1 44 THR 44 369 369 THR THR A . n
A 1 45 PHE 45 370 370 PHE PHE A . n
A 1 46 LYS 46 371 371 LYS LYS A . n
A 1 47 CYS 47 372 372 CYS CYS A . n
A 1 48 TYR 48 373 373 TYR TYR A . n
A 1 49 GLY 49 374 374 GLY GLY A . n
A 1 50 VAL 50 375 375 VAL VAL A . n
A 1 51 SER 51 376 376 SER SER A . n
A 1 52 PRO 52 377 377 PRO PRO A . n
A 1 53 THR 53 378 378 THR THR A . n
A 1 54 LYS 54 379 379 LYS LYS A . n
A 1 55 LEU 55 380 380 LEU LEU A . n
A 1 56 ASN 56 381 381 ASN ASN A . n
A 1 57 ASP 57 382 382 ASP ASP A . n
A 1 58 LEU 58 383 383 LEU LEU A . n
A 1 59 CYS 59 384 384 CYS CYS A . n
A 1 60 PHE 60 385 385 PHE PHE A . n
A 1 61 THR 61 386 386 THR THR A . n
A 1 62 ASN 62 387 387 ASN ASN A . n
A 1 63 VAL 63 388 388 VAL VAL A . n
A 1 64 TYR 64 389 389 TYR TYR A . n
A 1 65 ALA 65 390 390 ALA ALA A . n
A 1 66 ASP 66 391 391 ASP ASP A . n
A 1 67 SER 67 392 392 SER SER A . n
A 1 68 PHE 68 393 393 PHE PHE A . n
A 1 69 VAL 69 394 394 VAL VAL A . n
A 1 70 ILE 70 395 395 ILE ILE A . n
A 1 71 ARG 71 396 396 ARG ARG A . n
A 1 72 GLY 72 397 397 GLY GLY A . n
A 1 73 ASP 73 398 398 ASP ASP A . n
A 1 74 GLU 74 399 399 GLU GLU A . n
A 1 75 VAL 75 400 400 VAL VAL A . n
A 1 76 ARG 76 401 401 ARG ARG A . n
A 1 77 GLN 77 402 402 GLN GLN A . n
A 1 78 ILE 78 403 403 ILE ILE A . n
A 1 79 ALA 79 404 404 ALA ALA A . n
A 1 80 PRO 80 405 405 PRO PRO A . n
A 1 81 GLY 81 406 406 GLY GLY A . n
A 1 82 GLN 82 407 407 GLN GLN A . n
A 1 83 THR 83 408 408 THR THR A . n
A 1 84 GLY 84 409 409 GLY GLY A . n
A 1 85 LYS 85 410 410 LYS LYS A . n
A 1 86 ILE 86 411 411 ILE ILE A . n
A 1 87 ALA 87 412 412 ALA ALA A . n
A 1 88 ASP 88 413 413 ASP ASP A . n
A 1 89 TYR 89 414 414 TYR TYR A . n
A 1 90 ASN 90 415 415 ASN ASN A . n
A 1 91 TYR 91 416 416 TYR TYR A . n
A 1 92 LYS 92 417 417 LYS LYS A . n
A 1 93 LEU 93 418 418 LEU LEU A . n
A 1 94 PRO 94 419 419 PRO PRO A . n
A 1 95 ASP 95 420 420 ASP ASP A . n
A 1 96 ASP 96 421 421 ASP ASP A . n
A 1 97 PHE 97 422 422 PHE PHE A . n
A 1 98 THR 98 423 423 THR THR A . n
A 1 99 GLY 99 424 424 GLY GLY A . n
A 1 100 CYS 100 425 425 CYS CYS A . n
A 1 101 VAL 101 426 426 VAL VAL A . n
A 1 102 ILE 102 427 427 ILE ILE A . n
A 1 103 ALA 103 428 428 ALA ALA A . n
A 1 104 TRP 104 429 429 TRP TRP A . n
A 1 105 ASN 105 430 430 ASN ASN A . n
A 1 106 SER 106 431 431 SER SER A . n
A 1 107 ASN 107 432 432 ASN ASN A . n
A 1 108 ASN 108 433 433 ASN ASN A . n
A 1 109 LEU 109 434 434 LEU LEU A . n
A 1 110 ASP 110 435 435 ASP ASP A . n
A 1 111 SER 111 436 436 SER SER A . n
A 1 112 LYS 112 437 437 LYS LYS A . n
A 1 113 VAL 113 438 438 VAL VAL A . n
A 1 114 GLY 114 439 439 GLY GLY A . n
A 1 115 GLY 115 440 440 GLY GLY A . n
A 1 116 ASN 116 441 441 ASN ASN A . n
A 1 117 TYR 117 442 442 TYR TYR A . n
A 1 118 ASN 118 443 443 ASN ASN A . n
A 1 119 TYR 119 444 444 TYR TYR A . n
A 1 120 LEU 120 445 445 LEU LEU A . n
A 1 121 TYR 121 446 446 TYR TYR A . n
A 1 122 ARG 122 447 447 ARG ARG A . n
A 1 123 LEU 123 448 448 LEU LEU A . n
A 1 124 PHE 124 449 449 PHE PHE A . n
A 1 125 ARG 125 450 450 ARG ARG A . n
A 1 126 LYS 126 451 451 LYS LYS A . n
A 1 127 SER 127 452 452 SER SER A . n
A 1 128 ASN 128 453 453 ASN ASN A . n
A 1 129 LEU 129 454 454 LEU LEU A . n
A 1 130 LYS 130 455 455 LYS LYS A . n
A 1 131 PRO 131 456 456 PRO PRO A . n
A 1 132 PHE 132 457 457 PHE PHE A . n
A 1 133 GLU 133 458 458 GLU GLU A . n
A 1 134 ARG 134 459 459 ARG ARG A . n
A 1 135 ASP 135 460 460 ASP ASP A . n
A 1 136 ILE 136 461 461 ILE ILE A . n
A 1 137 SER 137 462 462 SER SER A . n
A 1 138 THR 138 463 463 THR THR A . n
A 1 139 GLU 139 464 464 GLU GLU A . n
A 1 140 ILE 140 465 465 ILE ILE A . n
A 1 141 TYR 141 466 466 TYR TYR A . n
A 1 142 GLN 142 467 467 GLN GLN A . n
A 1 143 ALA 143 468 468 ALA ALA A . n
A 1 144 GLY 144 469 469 GLY GLY A . n
A 1 145 SER 145 470 470 SER SER A . n
A 1 146 THR 146 471 471 THR THR A . n
A 1 147 PRO 147 472 472 PRO PRO A . n
A 1 148 CYS 148 473 473 CYS CYS A . n
A 1 149 ASN 149 474 474 ASN ASN A . n
A 1 150 GLY 150 475 475 GLY GLY A . n
A 1 151 VAL 151 476 476 VAL VAL A . n
A 1 152 GLU 152 477 477 GLU GLU A . n
A 1 153 GLY 153 478 478 GLY GLY A . n
A 1 154 PHE 154 479 479 PHE PHE A . n
A 1 155 ASN 155 480 480 ASN ASN A . n
A 1 156 CYS 156 481 481 CYS CYS A . n
A 1 157 TYR 157 482 482 TYR TYR A . n
A 1 158 PHE 158 483 483 PHE PHE A . n
A 1 159 PRO 159 484 484 PRO PRO A . n
A 1 160 LEU 160 485 485 LEU LEU A . n
A 1 161 GLN 161 486 486 GLN GLN A . n
A 1 162 SER 162 487 487 SER SER A . n
A 1 163 TYR 163 488 488 TYR TYR A . n
A 1 164 GLY 164 489 489 GLY GLY A . n
A 1 165 PHE 165 490 490 PHE PHE A . n
A 1 166 GLN 166 491 491 GLN GLN A . n
A 1 167 PRO 167 492 492 PRO PRO A . n
A 1 168 THR 168 493 493 THR THR A . n
A 1 169 ASN 169 494 494 ASN ASN A . n
A 1 170 GLY 170 495 495 GLY GLY A . n
A 1 171 VAL 171 496 496 VAL VAL A . n
A 1 172 GLY 172 497 497 GLY GLY A . n
A 1 173 TYR 173 498 498 TYR TYR A . n
A 1 174 GLN 174 499 499 GLN GLN A . n
A 1 175 PRO 175 500 500 PRO PRO A . n
A 1 176 TYR 176 501 501 TYR TYR A . n
A 1 177 ARG 177 502 502 ARG ARG A . n
A 1 178 VAL 178 503 503 VAL VAL A . n
A 1 179 VAL 179 504 504 VAL VAL A . n
A 1 180 VAL 180 505 505 VAL VAL A . n
A 1 181 LEU 181 506 506 LEU LEU A . n
A 1 182 SER 182 507 507 SER SER A . n
A 1 183 PHE 183 508 508 PHE PHE A . n
A 1 184 GLU 184 509 509 GLU GLU A . n
A 1 185 LEU 185 510 510 LEU LEU A . n
A 1 186 LEU 186 511 511 LEU LEU A . n
A 1 187 HIS 187 512 512 HIS HIS A . n
A 1 188 ALA 188 513 513 ALA ALA A . n
A 1 189 PRO 189 514 514 PRO PRO A . n
A 1 190 ALA 190 515 515 ALA ALA A . n
A 1 191 THR 191 516 516 THR THR A . n
A 1 192 VAL 192 517 517 VAL VAL A . n
A 1 193 CYS 193 518 518 CYS CYS A . n
A 1 194 GLY 194 519 519 GLY GLY A . n
B 2 1 GLN 1 1 ? ? ? H . n
B 2 2 VAL 2 2 2 VAL VAL H . n
B 2 3 GLN 3 3 3 GLN GLN H . n
B 2 4 LEU 4 4 4 LEU LEU H . n
B 2 5 VAL 5 5 5 VAL VAL H . n
B 2 6 GLU 6 6 6 GLU GLU H . n
B 2 7 SER 7 7 7 SER SER H . n
B 2 8 GLY 8 8 8 GLY GLY H . n
B 2 9 GLY 9 9 9 GLY GLY H . n
B 2 10 GLY 10 10 10 GLY GLY H . n
B 2 11 VAL 11 11 11 VAL VAL H . n
B 2 12 VAL 12 12 12 VAL VAL H . n
B 2 13 GLN 13 13 13 GLN GLN H . n
B 2 14 PRO 14 14 14 PRO PRO H . n
B 2 15 GLY 15 15 15 GLY GLY H . n
B 2 16 ARG 16 16 16 ARG ARG H . n
B 2 17 SER 17 17 17 SER SER H . n
B 2 18 LEU 18 18 18 LEU LEU H . n
B 2 19 ARG 19 19 19 ARG ARG H . n
B 2 20 LEU 20 20 20 LEU LEU H . n
B 2 21 SER 21 21 21 SER SER H . n
B 2 22 CYS 22 22 22 CYS CYS H . n
B 2 23 ALA 23 23 23 ALA ALA H . n
B 2 24 ALA 24 24 24 ALA ALA H . n
B 2 25 SER 25 25 25 SER SER H . n
B 2 26 GLY 26 26 26 GLY GLY H . n
B 2 27 PHE 27 27 27 PHE PHE H . n
B 2 28 THR 28 28 28 THR THR H . n
B 2 29 PHE 29 29 29 PHE PHE H . n
B 2 30 SER 30 30 30 SER SER H . n
B 2 31 SER 31 31 31 SER SER H . n
B 2 32 TYR 32 32 32 TYR TYR H . n
B 2 33 GLY 33 33 33 GLY GLY H . n
B 2 34 MET 34 34 34 MET MET H . n
B 2 35 ASN 35 35 35 ASN ASN H . n
B 2 36 TRP 36 36 36 TRP TRP H . n
B 2 37 VAL 37 37 37 VAL VAL H . n
B 2 38 ARG 38 38 38 ARG ARG H . n
B 2 39 GLN 39 39 39 GLN GLN H . n
B 2 40 ALA 40 40 40 ALA ALA H . n
B 2 41 PRO 41 41 41 PRO PRO H . n
B 2 42 GLY 42 42 42 GLY GLY H . n
B 2 43 LYS 43 43 43 LYS LYS H . n
B 2 44 GLY 44 44 44 GLY GLY H . n
B 2 45 LEU 45 45 45 LEU LEU H . n
B 2 46 GLU 46 46 46 GLU GLU H . n
B 2 47 TRP 47 47 47 TRP TRP H . n
B 2 48 VAL 48 48 48 VAL VAL H . n
B 2 49 ALA 49 49 49 ALA ALA H . n
B 2 50 ILE 50 50 50 ILE ILE H . n
B 2 51 ILE 51 51 51 ILE ILE H . n
B 2 52 TRP 52 52 52 TRP TRP H . n
B 2 53 TYR 53 53 53 TYR TYR H . n
B 2 54 ASP 54 54 54 ASP ASP H . n
B 2 55 GLY 55 55 55 GLY GLY H . n
B 2 56 ASN 56 56 56 ASN ASN H . n
B 2 57 ASN 57 57 57 ASN ASN H . n
B 2 58 LYS 58 58 58 LYS LYS H . n
B 2 59 TYR 59 59 59 TYR TYR H . n
B 2 60 TYR 60 60 60 TYR TYR H . n
B 2 61 VAL 61 61 61 VAL VAL H . n
B 2 62 ASP 62 62 62 ASP ASP H . n
B 2 63 SER 63 63 63 SER SER H . n
B 2 64 VAL 64 64 64 VAL VAL H . n
B 2 65 LYS 65 65 65 LYS LYS H . n
B 2 66 GLY 66 66 66 GLY GLY H . n
B 2 67 ARG 67 67 67 ARG ARG H . n
B 2 68 PHE 68 68 68 PHE PHE H . n
B 2 69 THR 69 69 69 THR THR H . n
B 2 70 ILE 70 70 70 ILE ILE H . n
B 2 71 SER 71 71 71 SER SER H . n
B 2 72 ARG 72 72 72 ARG ARG H . n
B 2 73 ASP 73 73 73 ASP ASP H . n
B 2 74 ASN 74 74 74 ASN ASN H . n
B 2 75 SER 75 75 75 SER SER H . n
B 2 76 LYS 76 76 76 LYS LYS H . n
B 2 77 ASN 77 77 77 ASN ASN H . n
B 2 78 THR 78 78 78 THR THR H . n
B 2 79 LEU 79 79 79 LEU LEU H . n
B 2 80 TYR 80 80 80 TYR TYR H . n
B 2 81 LEU 81 81 81 LEU LEU H . n
B 2 82 GLN 82 82 82 GLN GLN H . n
B 2 83 MET 83 83 83 MET MET H . n
B 2 84 ASN 84 84 84 ASN ASN H . n
B 2 85 SER 85 85 85 SER SER H . n
B 2 86 LEU 86 86 86 LEU LEU H . n
B 2 87 ARG 87 87 87 ARG ARG H . n
B 2 88 ALA 88 88 88 ALA ALA H . n
B 2 89 GLU 89 89 89 GLU GLU H . n
B 2 90 ASP 90 90 90 ASP ASP H . n
B 2 91 THR 91 91 91 THR THR H . n
B 2 92 ALA 92 92 92 ALA ALA H . n
B 2 93 VAL 93 93 93 VAL VAL H . n
B 2 94 TYR 94 94 94 TYR TYR H . n
B 2 95 TYR 95 95 95 TYR TYR H . n
B 2 96 CYS 96 96 96 CYS CYS H . n
B 2 97 ALA 97 97 97 ALA ALA H . n
B 2 98 ARG 98 98 98 ARG ARG H . n
B 2 99 LYS 99 99 99 LYS LYS H . n
B 2 100 ASP 100 100 100 ASP ASP H . n
B 2 101 TYR 101 101 101 TYR TYR H . n
B 2 102 SER 102 102 102 SER SER H . n
B 2 103 LYS 103 103 103 LYS LYS H . n
B 2 104 THR 104 104 104 THR THR H . n
B 2 105 TYR 105 105 105 TYR TYR H . n
B 2 106 TYR 106 106 106 TYR TYR H . n
B 2 107 GLY 107 107 107 GLY GLY H . n
B 2 108 TYR 108 108 108 TYR TYR H . n
B 2 109 TYR 109 109 109 TYR TYR H . n
B 2 110 PHE 110 110 110 PHE PHE H . n
B 2 111 ASP 111 111 111 ASP ASP H . n
B 2 112 TYR 112 112 112 TYR TYR H . n
B 2 113 TRP 113 113 113 TRP TRP H . n
B 2 114 GLY 114 114 114 GLY GLY H . n
B 2 115 GLN 115 115 115 GLN GLN H . n
B 2 116 GLY 116 116 116 GLY GLY H . n
B 2 117 THR 117 117 117 THR THR H . n
B 2 118 LEU 118 118 118 LEU LEU H . n
B 2 119 VAL 119 119 119 VAL VAL H . n
B 2 120 THR 120 120 120 THR THR H . n
B 2 121 VAL 121 121 121 VAL VAL H . n
B 2 122 SER 122 122 122 SER SER H . n
B 2 123 SER 123 123 123 SER SER H . n
C 3 1 ASP 1 1 1 ASP ASP L . n
C 3 2 ILE 2 2 2 ILE ILE L . n
C 3 3 GLN 3 3 3 GLN GLN L . n
C 3 4 MET 4 4 4 MET MET L . n
C 3 5 THR 5 5 5 THR THR L . n
C 3 6 GLN 6 6 6 GLN GLN L . n
C 3 7 SER 7 7 7 SER SER L . n
C 3 8 PRO 8 8 8 PRO PRO L . n
C 3 9 SER 9 9 9 SER SER L . n
C 3 10 SER 10 10 10 SER SER L . n
C 3 11 LEU 11 11 11 LEU LEU L . n
C 3 12 SER 12 12 12 SER SER L . n
C 3 13 ALA 13 13 13 ALA ALA L . n
C 3 14 SER 14 14 14 SER SER L . n
C 3 15 VAL 15 15 15 VAL VAL L . n
C 3 16 GLY 16 16 16 GLY GLY L . n
C 3 17 ASP 17 17 17 ASP ASP L . n
C 3 18 ARG 18 18 18 ARG ARG L . n
C 3 19 VAL 19 19 19 VAL VAL L . n
C 3 20 THR 20 20 20 THR THR L . n
C 3 21 ILE 21 21 21 ILE ILE L . n
C 3 22 THR 22 22 22 THR THR L . n
C 3 23 CYS 23 23 23 CYS CYS L . n
C 3 24 ARG 24 24 24 ARG ARG L . n
C 3 25 ALA 25 25 25 ALA ALA L . n
C 3 26 SER 26 26 26 SER SER L . n
C 3 27 GLN 27 27 27 GLN GLN L . n
C 3 28 SER 28 28 28 SER SER L . n
C 3 29 ILE 29 29 29 ILE ILE L . n
C 3 30 HIS 30 30 30 HIS HIS L . n
C 3 31 SER 31 31 31 SER SER L . n
C 3 32 PHE 32 32 32 PHE PHE L . n
C 3 33 LEU 33 33 33 LEU LEU L . n
C 3 34 ASN 34 34 34 ASN ASN L . n
C 3 35 TRP 35 35 35 TRP TRP L . n
C 3 36 TYR 36 36 36 TYR TYR L . n
C 3 37 GLN 37 37 37 GLN GLN L . n
C 3 38 GLN 38 38 38 GLN GLN L . n
C 3 39 LYS 39 39 39 LYS LYS L . n
C 3 40 PRO 40 40 40 PRO PRO L . n
C 3 41 GLY 41 41 41 GLY GLY L . n
C 3 42 LYS 42 42 42 LYS LYS L . n
C 3 43 PRO 43 43 43 PRO PRO L . n
C 3 44 PRO 44 44 44 PRO PRO L . n
C 3 45 ASN 45 45 45 ASN ASN L . n
C 3 46 LEU 46 46 46 LEU LEU L . n
C 3 47 LEU 47 47 47 LEU LEU L . n
C 3 48 ILE 48 48 48 ILE ILE L . n
C 3 49 TYR 49 49 49 TYR TYR L . n
C 3 50 ALA 50 50 50 ALA ALA L . n
C 3 51 ALA 51 51 51 ALA ALA L . n
C 3 52 SER 52 52 52 SER SER L . n
C 3 53 SER 53 53 53 SER SER L . n
C 3 54 LEU 54 54 54 LEU LEU L . n
C 3 55 GLN 55 55 55 GLN GLN L . n
C 3 56 SER 56 56 56 SER SER L . n
C 3 57 GLY 57 57 57 GLY GLY L . n
C 3 58 LEU 58 58 58 LEU LEU L . n
C 3 59 PRO 59 59 59 PRO PRO L . n
C 3 60 SER 60 60 60 SER SER L . n
C 3 61 ARG 61 61 61 ARG ARG L . n
C 3 62 PHE 62 62 62 PHE PHE L . n
C 3 63 SER 63 63 63 SER SER L . n
C 3 64 GLY 64 64 64 GLY GLY L . n
C 3 65 SER 65 65 65 SER SER L . n
C 3 66 GLY 66 66 66 GLY GLY L . n
C 3 67 SER 67 67 67 SER SER L . n
C 3 68 GLY 68 68 68 GLY GLY L . n
C 3 69 THR 69 69 69 THR THR L . n
C 3 70 ASP 70 70 70 ASP ASP L . n
C 3 71 PHE 71 71 71 PHE PHE L . n
C 3 72 THR 72 72 72 THR THR L . n
C 3 73 LEU 73 73 73 LEU LEU L . n
C 3 74 THR 74 74 74 THR THR L . n
C 3 75 ILE 75 75 75 ILE ILE L . n
C 3 76 SER 76 76 76 SER SER L . n
C 3 77 SER 77 77 77 SER SER L . n
C 3 78 LEU 78 78 78 LEU LEU L . n
C 3 79 GLN 79 79 79 GLN GLN L . n
C 3 80 PRO 80 80 80 PRO PRO L . n
C 3 81 GLU 81 81 81 GLU GLU L . n
C 3 82 ASP 82 82 82 ASP ASP L . n
C 3 83 PHE 83 83 83 PHE PHE L . n
C 3 84 ALA 84 84 84 ALA ALA L . n
C 3 85 THR 85 85 85 THR THR L . n
C 3 86 TYR 86 86 86 TYR TYR L . n
C 3 87 TYR 87 87 87 TYR TYR L . n
C 3 88 CYS 88 88 88 CYS CYS L . n
C 3 89 GLN 89 89 89 GLN GLN L . n
C 3 90 GLN 90 90 90 GLN GLN L . n
C 3 91 SER 91 91 91 SER SER L . n
C 3 92 TYR 92 92 92 TYR TYR L . n
C 3 93 ILE 93 93 93 ILE ILE L . n
C 3 94 THR 94 94 94 THR THR L . n
C 3 95 PRO 95 95 95 PRO PRO L . n
C 3 96 PRO 96 96 96 PRO PRO L . n
C 3 97 THR 97 97 97 THR THR L . n
C 3 98 PHE 98 98 98 PHE PHE L . n
C 3 99 GLY 99 99 99 GLY GLY L . n
C 3 100 HIS 100 100 100 HIS HIS L . n
C 3 101 GLY 101 101 101 GLY GLY L . n
C 3 102 THR 102 102 102 THR THR L . n
C 3 103 LYS 103 103 103 LYS LYS L . n
C 3 104 VAL 104 104 104 VAL VAL L . n
C 3 105 GLU 105 105 105 GLU GLU L . n
C 3 106 ILE 106 106 106 ILE ILE L . n
C 3 107 LYS 107 107 ? ? ? L . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
D 4 NAG 1 B NAG 1 A NAG 703 n
D 4 NAG 2 B NAG 2 A NAG 704 n
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name PHENIX
_software.os ?
_software.os_version ?
_software.type ?
_software.version 1.20.1_4487:
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 8EQF
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 1.00
_cell.length_a_esd ?
_cell.length_b 1.00
_cell.length_b_esd ?
_cell.length_c 1.00
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB ?
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 8EQF
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8EQF
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.method_details ?
#
_refine.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine.entry_id 8EQF
_refine.pdbx_diffrn_id ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high .
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON MICROSCOPY' ? 0.003 ? 3438 ? f_bond_d ? ?
'ELECTRON MICROSCOPY' ? 0.475 ? 4674 ? f_angle_d ? ?
'ELECTRON MICROSCOPY' ? 4.157 ? 483 ? f_dihedral_angle_d ? ?
'ELECTRON MICROSCOPY' ? 0.042 ? 500 ? f_chiral_restr ? ?
'ELECTRON MICROSCOPY' ? 0.004 ? 601 ? f_plane_restr ? ?
#
_struct.entry_id 8EQF
_struct.title 'cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8EQF
_struct_keywords.text 'antibody, SARS-CoV-2, IMMUNE SYSTEM'
_struct_keywords.pdbx_keywords 'IMMUNE SYSTEM'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP SPIKE_SARS2 P0DTC2 ? 1
;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP
GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL
QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
;
333
2 PDB 8EQF 8EQF ? 2 ? 1
3 PDB 8EQF 8EQF ? 3 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 8EQF A 1 ? 194 ? P0DTC2 333 ? 526 ? 326 519
2 2 8EQF H 1 ? 123 ? 8EQF 1 ? 123 ? 1 123
3 3 8EQF L 1 ? 107 ? 8EQF 1 ? 107 ? 1 107
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support microscopy
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation ?
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 PRO A 5 ? ASN A 11 ? PRO A 330 ASN A 336 1 ? 7
HELX_P HELX_P2 AA2 SER A 17 ? TRP A 21 ? SER A 342 TRP A 346 5 ? 5
HELX_P HELX_P3 AA3 ASP A 73 ? ILE A 78 ? ASP A 398 ILE A 403 5 ? 6
HELX_P HELX_P4 AA4 GLY A 84 ? ASN A 90 ? GLY A 409 ASN A 415 1 ? 7
HELX_P HELX_P5 AA5 THR B 28 ? TYR B 32 ? THR H 28 TYR H 32 5 ? 5
HELX_P HELX_P6 AA6 ARG B 87 ? THR B 91 ? ARG H 87 THR H 91 5 ? 5
HELX_P HELX_P7 AA7 GLN C 79 ? PHE C 83 ? GLN L 79 PHE L 83 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 329 A CYS 354 1_555 ? ? ? ? ? ? ? 2.030 ? ?
disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 372 A CYS 425 1_555 ? ? ? ? ? ? ? 2.034 ? ?
disulf3 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 384 A CYS 518 1_555 ? ? ? ? ? ? ? 2.029 ? ?
disulf4 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 473 A CYS 481 1_555 ? ? ? ? ? ? ? 2.026 ? ?
disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.034 ? ?
disulf6 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.034 ? ?
covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 336 B NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation
covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG D . ? ASN A 11 ? NAG B 1 ? 1_555 ASN A 336 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 CYS A 4 ? CYS A 29 ? CYS A 329 ? 1_555 CYS A 354 ? 1_555 SG SG . . . None 'Disulfide bridge'
3 CYS A 47 ? CYS A 100 ? CYS A 372 ? 1_555 CYS A 425 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 59 ? CYS A 193 ? CYS A 384 ? 1_555 CYS A 518 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 148 ? CYS A 156 ? CYS A 473 ? 1_555 CYS A 481 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS B 22 ? CYS B 96 ? CYS H 22 ? 1_555 CYS H 96 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS C 23 ? CYS C 88 ? CYS L 23 ? 1_555 CYS L 88 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 SER 7 C . ? SER 7 L PRO 8 C ? PRO 8 L 1 -3.15
2 THR 94 C . ? THR 94 L PRO 95 C ? PRO 95 L 1 3.30
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 5 ?
AA2 ? 2 ?
AA3 ? 2 ?
AA4 ? 2 ?
AA5 ? 4 ?
AA6 ? 6 ?
AA7 ? 4 ?
AA8 ? 6 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA1 4 5 ? anti-parallel
AA2 1 2 ? parallel
AA3 1 2 ? anti-parallel
AA4 1 2 ? anti-parallel
AA5 1 2 ? anti-parallel
AA5 2 3 ? anti-parallel
AA5 3 4 ? anti-parallel
AA6 1 2 ? parallel
AA6 2 3 ? anti-parallel
AA6 3 4 ? anti-parallel
AA6 4 5 ? anti-parallel
AA6 5 6 ? anti-parallel
AA7 1 2 ? anti-parallel
AA7 2 3 ? anti-parallel
AA7 3 4 ? anti-parallel
AA8 1 2 ? parallel
AA8 2 3 ? anti-parallel
AA8 3 4 ? anti-parallel
AA8 4 5 ? anti-parallel
AA8 5 6 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 ASN A 22 ? ILE A 26 ? ASN A 347 ILE A 351
AA1 2 ASN A 62 ? ARG A 71 ? ASN A 387 ARG A 396
AA1 3 PRO A 175 ? GLU A 184 ? PRO A 500 GLU A 509
AA1 4 GLY A 99 ? ASN A 105 ? GLY A 424 ASN A 430
AA1 5 THR A 44 ? CYS A 47 ? THR A 369 CYS A 372
AA2 1 CYS A 29 ? VAL A 30 ? CYS A 354 VAL A 355
AA2 2 VAL A 192 ? CYS A 193 ? VAL A 517 CYS A 518
AA3 1 LEU A 120 ? ARG A 122 ? LEU A 445 ARG A 447
AA3 2 LEU A 160 ? SER A 162 ? LEU A 485 SER A 487
AA4 1 TYR A 141 ? GLN A 142 ? TYR A 466 GLN A 467
AA4 2 CYS A 156 ? TYR A 157 ? CYS A 481 TYR A 482
AA5 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7
AA5 2 LEU B 18 ? SER B 25 ? LEU H 18 SER H 25
AA5 3 THR B 78 ? MET B 83 ? THR H 78 MET H 83
AA5 4 PHE B 68 ? ASP B 73 ? PHE H 68 ASP H 73
AA6 1 GLY B 10 ? VAL B 11 ? GLY H 10 VAL H 11
AA6 2 THR B 117 ? THR B 120 ? THR H 117 THR H 120
AA6 3 ALA B 92 ? ARG B 98 ? ALA H 92 ARG H 98
AA6 4 MET B 34 ? GLN B 39 ? MET H 34 GLN H 39
AA6 5 LEU B 45 ? ILE B 51 ? LEU H 45 ILE H 51
AA6 6 LYS B 58 ? TYR B 60 ? LYS H 58 TYR H 60
AA7 1 MET C 4 ? SER C 7 ? MET L 4 SER L 7
AA7 2 VAL C 19 ? ALA C 25 ? VAL L 19 ALA L 25
AA7 3 ASP C 70 ? ILE C 75 ? ASP L 70 ILE L 75
AA7 4 PHE C 62 ? SER C 67 ? PHE L 62 SER L 67
AA8 1 SER C 10 ? SER C 12 ? SER L 10 SER L 12
AA8 2 THR C 102 ? GLU C 105 ? THR L 102 GLU L 105
AA8 3 THR C 85 ? GLN C 90 ? THR L 85 GLN L 90
AA8 4 LEU C 33 ? GLN C 38 ? LEU L 33 GLN L 38
AA8 5 ASN C 45 ? TYR C 49 ? ASN L 45 TYR L 49
AA8 6 SER C 53 ? LEU C 54 ? SER L 53 LEU L 54
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N LYS A 24 ? N LYS A 349 O ALA A 65 ? O ALA A 390
AA1 2 3 N ILE A 70 ? N ILE A 395 O TYR A 176 ? O TYR A 501
AA1 3 4 O VAL A 179 ? O VAL A 504 N ILE A 102 ? N ILE A 427
AA1 4 5 O ALA A 103 ? O ALA A 428 N THR A 44 ? N THR A 369
AA2 1 2 N CYS A 29 ? N CYS A 354 O CYS A 193 ? O CYS A 518
AA3 1 2 N TYR A 121 ? N TYR A 446 O GLN A 161 ? O GLN A 486
AA4 1 2 N TYR A 141 ? N TYR A 466 O TYR A 157 ? O TYR A 482
AA5 1 2 N SER B 7 ? N SER H 7 O SER B 21 ? O SER H 21
AA5 2 3 N LEU B 20 ? N LEU H 20 O LEU B 81 ? O LEU H 81
AA5 3 4 O GLN B 82 ? O GLN H 82 N THR B 69 ? N THR H 69
AA6 1 2 N GLY B 10 ? N GLY H 10 O THR B 120 ? O THR H 120
AA6 2 3 O THR B 117 ? O THR H 117 N TYR B 94 ? N TYR H 94
AA6 3 4 O TYR B 95 ? O TYR H 95 N VAL B 37 ? N VAL H 37
AA6 4 5 N ARG B 38 ? N ARG H 38 O GLU B 46 ? O GLU H 46
AA6 5 6 N ILE B 50 ? N ILE H 50 O TYR B 59 ? O TYR H 59
AA7 1 2 N SER C 7 ? N SER L 7 O THR C 22 ? O THR L 22
AA7 2 3 N VAL C 19 ? N VAL L 19 O ILE C 75 ? O ILE L 75
AA7 3 4 O THR C 74 ? O THR L 74 N SER C 63 ? N SER L 63
AA8 1 2 N LEU C 11 ? N LEU L 11 O GLU C 105 ? O GLU L 105
AA8 2 3 O THR C 102 ? O THR L 102 N TYR C 86 ? N TYR L 86
AA8 3 4 O THR C 85 ? O THR L 85 N GLN C 38 ? N GLN L 38
AA8 4 5 N GLN C 37 ? N GLN L 37 O ASN C 45 ? O ASN L 45
AA8 5 6 N TYR C 49 ? N TYR L 49 O SER C 53 ? O SER L 53
#
_pdbx_entry_details.entry_id 8EQF
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O4
_pdbx_validate_close_contact.auth_asym_id_1 B
_pdbx_validate_close_contact.auth_comp_id_1 NAG
_pdbx_validate_close_contact.auth_seq_id_1 1
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O6
_pdbx_validate_close_contact.auth_asym_id_2 B
_pdbx_validate_close_contact.auth_comp_id_2 NAG
_pdbx_validate_close_contact.auth_seq_id_2 2
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.00
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 TYR A 358 ? ? -87.77 48.35
2 1 ASP A 421 ? ? -95.97 52.81
3 1 SER A 431 ? ? -143.01 34.48
4 1 LEU A 434 ? ? 80.90 -3.20
5 1 ASP A 435 ? ? -145.50 16.62
6 1 SER H 30 ? ? -82.42 38.95
7 1 SER H 63 ? ? 75.96 -2.45
8 1 LYS H 103 ? ? 69.26 -3.17
9 1 HIS L 30 ? ? 62.65 -130.00
10 1 ALA L 51 ? ? 75.59 -11.23
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 8EQF
_em_3d_fitting.method ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_space ?
_em_3d_fitting.ref_protocol ?
#
_em_3d_reconstruction.entry_id 8EQF
_em_3d_reconstruction.id 1
_em_3d_reconstruction.method ?
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.citation_id ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.resolution 3.16
_em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF'
_em_3d_reconstruction.magnification_calibration ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.num_particles 320574
_em_3d_reconstruction.euler_angles_details ?
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.symmetry_type POINT
#
_em_buffer.id 1
_em_buffer.specimen_id 1
_em_buffer.name ?
_em_buffer.details ?
_em_buffer.pH 7.5
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.source RECOMBINANT
_em_entity_assembly.type COMPLEX
_em_entity_assembly.name 'SARS-CoV-2 spike RBD in complex with 10A3 Fab'
_em_entity_assembly.details ?
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
_em_entity_assembly.entity_id_list '1, 2, 3'
#
_em_imaging.entry_id 8EQF
_em_imaging.id 1
_em_imaging.astigmatism ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.residual_tilt ?
_em_imaging.microscope_model 'FEI TITAN KRIOS'
_em_imaging.specimen_holder_type ?
_em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER'
_em_imaging.details ?
_em_imaging.date ?
_em_imaging.accelerating_voltage 300
_em_imaging.illumination_mode OTHER
_em_imaging.mode OTHER
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_min 500
_em_imaging.nominal_defocus_max 1500
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.nominal_magnification ?
_em_imaging.calibrated_magnification ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.citation_id ?
_em_imaging.temperature ?
_em_imaging.detector_distance ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.specimen_id 1
_em_imaging.cryogen NITROGEN
#
_em_sample_support.id 1
_em_sample_support.film_material ?
_em_sample_support.method ?
_em_sample_support.grid_material GOLD
_em_sample_support.grid_mesh_size 300
_em_sample_support.grid_type UltrAuFoil
_em_sample_support.details ?
_em_sample_support.specimen_id 1
_em_sample_support.citation_id ?
#
_em_vitrification.entry_id 8EQF
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.cryogen_name ETHANE
_em_vitrification.humidity 100
_em_vitrification.temp ?
_em_vitrification.chamber_temperature 293
_em_vitrification.instrument 'FEI VITROBOT MARK IV'
_em_vitrification.method ?
_em_vitrification.time_resolved_state ?
_em_vitrification.citation_id ?
_em_vitrification.details ?
#
_em_experiment.entry_id 8EQF
_em_experiment.id 1
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
_em_experiment.aggregation_state PARTICLE
_em_experiment.entity_assembly_id 1
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 H GLN 1 ? B GLN 1
2 1 Y 1 L LYS 107 ? C LYS 107
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
LEU N N N N 180
LEU CA C N S 181
LEU C C N N 182
LEU O O N N 183
LEU CB C N N 184
LEU CG C N N 185
LEU CD1 C N N 186
LEU CD2 C N N 187
LEU OXT O N N 188
LEU H H N N 189
LEU H2 H N N 190
LEU HA H N N 191
LEU HB2 H N N 192
LEU HB3 H N N 193
LEU HG H N N 194
LEU HD11 H N N 195
LEU HD12 H N N 196
LEU HD13 H N N 197
LEU HD21 H N N 198
LEU HD22 H N N 199
LEU HD23 H N N 200
LEU HXT H N N 201
LYS N N N N 202
LYS CA C N S 203
LYS C C N N 204
LYS O O N N 205
LYS CB C N N 206
LYS CG C N N 207
LYS CD C N N 208
LYS CE C N N 209
LYS NZ N N N 210
LYS OXT O N N 211
LYS H H N N 212
LYS H2 H N N 213
LYS HA H N N 214
LYS HB2 H N N 215
LYS HB3 H N N 216
LYS HG2 H N N 217
LYS HG3 H N N 218
LYS HD2 H N N 219
LYS HD3 H N N 220
LYS HE2 H N N 221
LYS HE3 H N N 222
LYS HZ1 H N N 223
LYS HZ2 H N N 224
LYS HZ3 H N N 225
LYS HXT H N N 226
MET N N N N 227
MET CA C N S 228
MET C C N N 229
MET O O N N 230
MET CB C N N 231
MET CG C N N 232
MET SD S N N 233
MET CE C N N 234
MET OXT O N N 235
MET H H N N 236
MET H2 H N N 237
MET HA H N N 238
MET HB2 H N N 239
MET HB3 H N N 240
MET HG2 H N N 241
MET HG3 H N N 242
MET HE1 H N N 243
MET HE2 H N N 244
MET HE3 H N N 245
MET HXT H N N 246
NAG C1 C N R 247
NAG C2 C N R 248
NAG C3 C N R 249
NAG C4 C N S 250
NAG C5 C N R 251
NAG C6 C N N 252
NAG C7 C N N 253
NAG C8 C N N 254
NAG N2 N N N 255
NAG O1 O N N 256
NAG O3 O N N 257
NAG O4 O N N 258
NAG O5 O N N 259
NAG O6 O N N 260
NAG O7 O N N 261
NAG H1 H N N 262
NAG H2 H N N 263
NAG H3 H N N 264
NAG H4 H N N 265
NAG H5 H N N 266
NAG H61 H N N 267
NAG H62 H N N 268
NAG H81 H N N 269
NAG H82 H N N 270
NAG H83 H N N 271
NAG HN2 H N N 272
NAG HO1 H N N 273
NAG HO3 H N N 274
NAG HO4 H N N 275
NAG HO6 H N N 276
PHE N N N N 277
PHE CA C N S 278
PHE C C N N 279
PHE O O N N 280
PHE CB C N N 281
PHE CG C Y N 282
PHE CD1 C Y N 283
PHE CD2 C Y N 284
PHE CE1 C Y N 285
PHE CE2 C Y N 286
PHE CZ C Y N 287
PHE OXT O N N 288
PHE H H N N 289
PHE H2 H N N 290
PHE HA H N N 291
PHE HB2 H N N 292
PHE HB3 H N N 293
PHE HD1 H N N 294
PHE HD2 H N N 295
PHE HE1 H N N 296
PHE HE2 H N N 297
PHE HZ H N N 298
PHE HXT H N N 299
PRO N N N N 300
PRO CA C N S 301
PRO C C N N 302
PRO O O N N 303
PRO CB C N N 304
PRO CG C N N 305
PRO CD C N N 306
PRO OXT O N N 307
PRO H H N N 308
PRO HA H N N 309
PRO HB2 H N N 310
PRO HB3 H N N 311
PRO HG2 H N N 312
PRO HG3 H N N 313
PRO HD2 H N N 314
PRO HD3 H N N 315
PRO HXT H N N 316
SER N N N N 317
SER CA C N S 318
SER C C N N 319
SER O O N N 320
SER CB C N N 321
SER OG O N N 322
SER OXT O N N 323
SER H H N N 324
SER H2 H N N 325
SER HA H N N 326
SER HB2 H N N 327
SER HB3 H N N 328
SER HG H N N 329
SER HXT H N N 330
THR N N N N 331
THR CA C N S 332
THR C C N N 333
THR O O N N 334
THR CB C N R 335
THR OG1 O N N 336
THR CG2 C N N 337
THR OXT O N N 338
THR H H N N 339
THR H2 H N N 340
THR HA H N N 341
THR HB H N N 342
THR HG1 H N N 343
THR HG21 H N N 344
THR HG22 H N N 345
THR HG23 H N N 346
THR HXT H N N 347
TRP N N N N 348
TRP CA C N S 349
TRP C C N N 350
TRP O O N N 351
TRP CB C N N 352
TRP CG C Y N 353
TRP CD1 C Y N 354
TRP CD2 C Y N 355
TRP NE1 N Y N 356
TRP CE2 C Y N 357
TRP CE3 C Y N 358
TRP CZ2 C Y N 359
TRP CZ3 C Y N 360
TRP CH2 C Y N 361
TRP OXT O N N 362
TRP H H N N 363
TRP H2 H N N 364
TRP HA H N N 365
TRP HB2 H N N 366
TRP HB3 H N N 367
TRP HD1 H N N 368
TRP HE1 H N N 369
TRP HE3 H N N 370
TRP HZ2 H N N 371
TRP HZ3 H N N 372
TRP HH2 H N N 373
TRP HXT H N N 374
TYR N N N N 375
TYR CA C N S 376
TYR C C N N 377
TYR O O N N 378
TYR CB C N N 379
TYR CG C Y N 380
TYR CD1 C Y N 381
TYR CD2 C Y N 382
TYR CE1 C Y N 383
TYR CE2 C Y N 384
TYR CZ C Y N 385
TYR OH O N N 386
TYR OXT O N N 387
TYR H H N N 388
TYR H2 H N N 389
TYR HA H N N 390
TYR HB2 H N N 391
TYR HB3 H N N 392
TYR HD1 H N N 393
TYR HD2 H N N 394
TYR HE1 H N N 395
TYR HE2 H N N 396
TYR HH H N N 397
TYR HXT H N N 398
VAL N N N N 399
VAL CA C N S 400
VAL C C N N 401
VAL O O N N 402
VAL CB C N N 403
VAL CG1 C N N 404
VAL CG2 C N N 405
VAL OXT O N N 406
VAL H H N N 407
VAL H2 H N N 408
VAL HA H N N 409
VAL HB H N N 410
VAL HG11 H N N 411
VAL HG12 H N N 412
VAL HG13 H N N 413
VAL HG21 H N N 414
VAL HG22 H N N 415
VAL HG23 H N N 416
VAL HXT H N N 417
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
ILE N CA sing N N 150
ILE N H sing N N 151
ILE N H2 sing N N 152
ILE CA C sing N N 153
ILE CA CB sing N N 154
ILE CA HA sing N N 155
ILE C O doub N N 156
ILE C OXT sing N N 157
ILE CB CG1 sing N N 158
ILE CB CG2 sing N N 159
ILE CB HB sing N N 160
ILE CG1 CD1 sing N N 161
ILE CG1 HG12 sing N N 162
ILE CG1 HG13 sing N N 163
ILE CG2 HG21 sing N N 164
ILE CG2 HG22 sing N N 165
ILE CG2 HG23 sing N N 166
ILE CD1 HD11 sing N N 167
ILE CD1 HD12 sing N N 168
ILE CD1 HD13 sing N N 169
ILE OXT HXT sing N N 170
LEU N CA sing N N 171
LEU N H sing N N 172
LEU N H2 sing N N 173
LEU CA C sing N N 174
LEU CA CB sing N N 175
LEU CA HA sing N N 176
LEU C O doub N N 177
LEU C OXT sing N N 178
LEU CB CG sing N N 179
LEU CB HB2 sing N N 180
LEU CB HB3 sing N N 181
LEU CG CD1 sing N N 182
LEU CG CD2 sing N N 183
LEU CG HG sing N N 184
LEU CD1 HD11 sing N N 185
LEU CD1 HD12 sing N N 186
LEU CD1 HD13 sing N N 187
LEU CD2 HD21 sing N N 188
LEU CD2 HD22 sing N N 189
LEU CD2 HD23 sing N N 190
LEU OXT HXT sing N N 191
LYS N CA sing N N 192
LYS N H sing N N 193
LYS N H2 sing N N 194
LYS CA C sing N N 195
LYS CA CB sing N N 196
LYS CA HA sing N N 197
LYS C O doub N N 198
LYS C OXT sing N N 199
LYS CB CG sing N N 200
LYS CB HB2 sing N N 201
LYS CB HB3 sing N N 202
LYS CG CD sing N N 203
LYS CG HG2 sing N N 204
LYS CG HG3 sing N N 205
LYS CD CE sing N N 206
LYS CD HD2 sing N N 207
LYS CD HD3 sing N N 208
LYS CE NZ sing N N 209
LYS CE HE2 sing N N 210
LYS CE HE3 sing N N 211
LYS NZ HZ1 sing N N 212
LYS NZ HZ2 sing N N 213
LYS NZ HZ3 sing N N 214
LYS OXT HXT sing N N 215
MET N CA sing N N 216
MET N H sing N N 217
MET N H2 sing N N 218
MET CA C sing N N 219
MET CA CB sing N N 220
MET CA HA sing N N 221
MET C O doub N N 222
MET C OXT sing N N 223
MET CB CG sing N N 224
MET CB HB2 sing N N 225
MET CB HB3 sing N N 226
MET CG SD sing N N 227
MET CG HG2 sing N N 228
MET CG HG3 sing N N 229
MET SD CE sing N N 230
MET CE HE1 sing N N 231
MET CE HE2 sing N N 232
MET CE HE3 sing N N 233
MET OXT HXT sing N N 234
NAG C1 C2 sing N N 235
NAG C1 O1 sing N N 236
NAG C1 O5 sing N N 237
NAG C1 H1 sing N N 238
NAG C2 C3 sing N N 239
NAG C2 N2 sing N N 240
NAG C2 H2 sing N N 241
NAG C3 C4 sing N N 242
NAG C3 O3 sing N N 243
NAG C3 H3 sing N N 244
NAG C4 C5 sing N N 245
NAG C4 O4 sing N N 246
NAG C4 H4 sing N N 247
NAG C5 C6 sing N N 248
NAG C5 O5 sing N N 249
NAG C5 H5 sing N N 250
NAG C6 O6 sing N N 251
NAG C6 H61 sing N N 252
NAG C6 H62 sing N N 253
NAG C7 C8 sing N N 254
NAG C7 N2 sing N N 255
NAG C7 O7 doub N N 256
NAG C8 H81 sing N N 257
NAG C8 H82 sing N N 258
NAG C8 H83 sing N N 259
NAG N2 HN2 sing N N 260
NAG O1 HO1 sing N N 261
NAG O3 HO3 sing N N 262
NAG O4 HO4 sing N N 263
NAG O6 HO6 sing N N 264
PHE N CA sing N N 265
PHE N H sing N N 266
PHE N H2 sing N N 267
PHE CA C sing N N 268
PHE CA CB sing N N 269
PHE CA HA sing N N 270
PHE C O doub N N 271
PHE C OXT sing N N 272
PHE CB CG sing N N 273
PHE CB HB2 sing N N 274
PHE CB HB3 sing N N 275
PHE CG CD1 doub Y N 276
PHE CG CD2 sing Y N 277
PHE CD1 CE1 sing Y N 278
PHE CD1 HD1 sing N N 279
PHE CD2 CE2 doub Y N 280
PHE CD2 HD2 sing N N 281
PHE CE1 CZ doub Y N 282
PHE CE1 HE1 sing N N 283
PHE CE2 CZ sing Y N 284
PHE CE2 HE2 sing N N 285
PHE CZ HZ sing N N 286
PHE OXT HXT sing N N 287
PRO N CA sing N N 288
PRO N CD sing N N 289
PRO N H sing N N 290
PRO CA C sing N N 291
PRO CA CB sing N N 292
PRO CA HA sing N N 293
PRO C O doub N N 294
PRO C OXT sing N N 295
PRO CB CG sing N N 296
PRO CB HB2 sing N N 297
PRO CB HB3 sing N N 298
PRO CG CD sing N N 299
PRO CG HG2 sing N N 300
PRO CG HG3 sing N N 301
PRO CD HD2 sing N N 302
PRO CD HD3 sing N N 303
PRO OXT HXT sing N N 304
SER N CA sing N N 305
SER N H sing N N 306
SER N H2 sing N N 307
SER CA C sing N N 308
SER CA CB sing N N 309
SER CA HA sing N N 310
SER C O doub N N 311
SER C OXT sing N N 312
SER CB OG sing N N 313
SER CB HB2 sing N N 314
SER CB HB3 sing N N 315
SER OG HG sing N N 316
SER OXT HXT sing N N 317
THR N CA sing N N 318
THR N H sing N N 319
THR N H2 sing N N 320
THR CA C sing N N 321
THR CA CB sing N N 322
THR CA HA sing N N 323
THR C O doub N N 324
THR C OXT sing N N 325
THR CB OG1 sing N N 326
THR CB CG2 sing N N 327
THR CB HB sing N N 328
THR OG1 HG1 sing N N 329
THR CG2 HG21 sing N N 330
THR CG2 HG22 sing N N 331
THR CG2 HG23 sing N N 332
THR OXT HXT sing N N 333
TRP N CA sing N N 334
TRP N H sing N N 335
TRP N H2 sing N N 336
TRP CA C sing N N 337
TRP CA CB sing N N 338
TRP CA HA sing N N 339
TRP C O doub N N 340
TRP C OXT sing N N 341
TRP CB CG sing N N 342
TRP CB HB2 sing N N 343
TRP CB HB3 sing N N 344
TRP CG CD1 doub Y N 345
TRP CG CD2 sing Y N 346
TRP CD1 NE1 sing Y N 347
TRP CD1 HD1 sing N N 348
TRP CD2 CE2 doub Y N 349
TRP CD2 CE3 sing Y N 350
TRP NE1 CE2 sing Y N 351
TRP NE1 HE1 sing N N 352
TRP CE2 CZ2 sing Y N 353
TRP CE3 CZ3 doub Y N 354
TRP CE3 HE3 sing N N 355
TRP CZ2 CH2 doub Y N 356
TRP CZ2 HZ2 sing N N 357
TRP CZ3 CH2 sing Y N 358
TRP CZ3 HZ3 sing N N 359
TRP CH2 HH2 sing N N 360
TRP OXT HXT sing N N 361
TYR N CA sing N N 362
TYR N H sing N N 363
TYR N H2 sing N N 364
TYR CA C sing N N 365
TYR CA CB sing N N 366
TYR CA HA sing N N 367
TYR C O doub N N 368
TYR C OXT sing N N 369
TYR CB CG sing N N 370
TYR CB HB2 sing N N 371
TYR CB HB3 sing N N 372
TYR CG CD1 doub Y N 373
TYR CG CD2 sing Y N 374
TYR CD1 CE1 sing Y N 375
TYR CD1 HD1 sing N N 376
TYR CD2 CE2 doub Y N 377
TYR CD2 HD2 sing N N 378
TYR CE1 CZ doub Y N 379
TYR CE1 HE1 sing N N 380
TYR CE2 CZ sing Y N 381
TYR CE2 HE2 sing N N 382
TYR CZ OH sing N N 383
TYR OH HH sing N N 384
TYR OXT HXT sing N N 385
VAL N CA sing N N 386
VAL N H sing N N 387
VAL N H2 sing N N 388
VAL CA C sing N N 389
VAL CA CB sing N N 390
VAL CA HA sing N N 391
VAL C O doub N N 392
VAL C OXT sing N N 393
VAL CB CG1 sing N N 394
VAL CB CG2 sing N N 395
VAL CB HB sing N N 396
VAL CG1 HG11 sing N N 397
VAL CG1 HG12 sing N N 398
VAL CG1 HG13 sing N N 399
VAL CG2 HG21 sing N N 400
VAL CG2 HG22 sing N N 401
VAL CG2 HG23 sing N N 402
VAL OXT HXT sing N N 403
#
_em_admin.current_status REL
_em_admin.deposition_date 2022-10-07
_em_admin.deposition_site RCSB
_em_admin.entry_id 8EQF
_em_admin.last_update 2024-10-16
_em_admin.map_release_date 2023-10-11
_em_admin.title 'cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167'
#
_em_ctf_correction.details ?
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.id 1
_em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION'
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.units ?
_em_entity_assembly_molwt.value ?
#
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.id 2
_em_entity_assembly_naturalsource.ncbi_tax_id 9606
_em_entity_assembly_naturalsource.organism 'Homo sapiens'
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_entity_assembly_recombinant.cell ?
_em_entity_assembly_recombinant.entity_assembly_id 1
_em_entity_assembly_recombinant.id 2
_em_entity_assembly_recombinant.ncbi_tax_id 9606
_em_entity_assembly_recombinant.organism 'Homo sapiens'
_em_entity_assembly_recombinant.plasmid ?
_em_entity_assembly_recombinant.strain ?
#
_em_image_processing.details ?
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
#
_em_image_recording.average_exposure_time ?
_em_image_recording.avg_electron_dose_per_subtomogram ?
_em_image_recording.avg_electron_dose_per_image 58.92
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)'
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.category
_em_software.details
_em_software.id
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
_em_software.name
_em_software.version
'PARTICLE SELECTION' ? 1 1 ? ? ? ?
'IMAGE ACQUISITION' ? 2 ? ? 1 Leginon ?
MASKING ? 3 ? ? ? ? ?
'CTF CORRECTION' ? 4 1 ? ? ? ?
'LAYERLINE INDEXING' ? 5 ? ? ? ? ?
'DIFFRACTION INDEXING' ? 6 ? ? ? ? ?
'MODEL FITTING' ? 7 ? ? ? ? ?
'MODEL REFINEMENT' ? 8 ? ? ? ? ?
OTHER ? 9 ? ? ? ? ?
'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ?
'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ?
CLASSIFICATION ? 12 1 ? ? ? ?
RECONSTRUCTION ? 13 1 ? ? ? ?
'VOLUME SELECTION' ? 14 1 1 1 ? ?
'SERIES ALIGNMENT' ? 15 1 1 1 ? ?
'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ?
'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ?
'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ?
'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ?
#
_em_specimen.concentration 1
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
_pdbx_audit_support.funding_organization
'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number AI168178
_pdbx_audit_support.ordinal 1
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
4 NAG 1 n
4 NAG 2 n
#
_pdbx_related_exp_data_set.ordinal 1
_pdbx_related_exp_data_set.data_reference 10.6019/EMPIAR-11341
_pdbx_related_exp_data_set.metadata_reference ?
_pdbx_related_exp_data_set.data_set_type EMPIAR
_pdbx_related_exp_data_set.details ?
#
_atom_sites.entry_id 8EQF
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_