HEADER OXIDOREDUCTASE 08-OCT-22 8EQO TITLE CRYSTAL STRUCTURE OF E.COLI DSBA MUTANT K58A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DSBA MUTANT, THIOREDOXIN-FAMILY PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,B.HERAS REVDAT 3 25-OCT-23 8EQO 1 REMARK REVDAT 2 15-MAR-23 8EQO 1 JRNL REVDAT 1 15-FEB-23 8EQO 0 JRNL AUTH G.WANG,J.QIN,A.D.VERDEROSA,L.HOR,C.SANTOS-MARTIN,J.J.PAXMAN, JRNL AUTH 2 J.L.MARTIN,M.TOTSIKA,B.HERAS JRNL TITL A BURIED WATER NETWORK MODULATES THE ACTIVITY OF THE JRNL TITL 2 ESCHERICHIA COLI DISULPHIDE CATALYST DSBA. JRNL REF ANTIOXIDANTS V. 12 2023 JRNL REFN ESSN 2076-3921 JRNL PMID 36829940 JRNL DOI 10.3390/ANTIOX12020380 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 54570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1800 - 4.4000 0.98 2641 158 0.1489 0.1603 REMARK 3 2 4.4000 - 3.5000 0.98 2617 140 0.1305 0.1437 REMARK 3 3 3.5000 - 3.0500 0.98 2638 106 0.1513 0.1838 REMARK 3 4 3.0500 - 2.7800 0.99 2559 160 0.1600 0.1874 REMARK 3 5 2.7800 - 2.5800 0.99 2600 143 0.1585 0.1826 REMARK 3 6 2.5800 - 2.4200 0.99 2608 133 0.1586 0.1973 REMARK 3 7 2.4200 - 2.3000 0.99 2557 147 0.1618 0.2048 REMARK 3 8 2.3000 - 2.2000 0.99 2640 145 0.1591 0.1964 REMARK 3 9 2.2000 - 2.1200 0.99 2582 126 0.1622 0.2120 REMARK 3 10 2.1200 - 2.0500 0.99 2616 140 0.1675 0.2116 REMARK 3 11 2.0500 - 1.9800 0.99 2602 122 0.1589 0.2085 REMARK 3 12 1.9800 - 1.9200 1.00 2611 105 0.1612 0.2073 REMARK 3 13 1.9200 - 1.8700 1.00 2628 141 0.1597 0.2023 REMARK 3 14 1.8700 - 1.8300 1.00 2622 132 0.1644 0.2025 REMARK 3 15 1.8300 - 1.7900 1.00 2632 115 0.1647 0.2269 REMARK 3 16 1.7900 - 1.7500 1.00 2595 144 0.1780 0.2134 REMARK 3 17 1.7500 - 1.7100 1.00 2565 162 0.1908 0.2551 REMARK 3 18 1.7100 - 1.6800 1.00 2608 150 0.1859 0.2172 REMARK 3 19 1.6800 - 1.6500 1.00 2608 144 0.1694 0.1992 REMARK 3 20 1.6500 - 1.6200 0.88 2303 125 0.1851 0.2219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2862 -13.2261 -13.9169 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.2263 REMARK 3 T33: 0.2320 T12: 0.0096 REMARK 3 T13: -0.0629 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.1774 L22: 7.7603 REMARK 3 L33: 1.3979 L12: -0.0104 REMARK 3 L13: 0.3727 L23: 2.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.1246 S13: 0.0632 REMARK 3 S21: -0.9645 S22: -0.2147 S23: 0.2459 REMARK 3 S31: -0.2979 S32: 0.0897 S33: 0.0826 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3240 -3.1607 -9.0833 REMARK 3 T TENSOR REMARK 3 T11: 0.3621 T22: 0.3690 REMARK 3 T33: 0.2870 T12: -0.0900 REMARK 3 T13: 0.0640 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.0129 L22: 5.6129 REMARK 3 L33: 6.2761 L12: 2.3755 REMARK 3 L13: 0.4991 L23: -1.4814 REMARK 3 S TENSOR REMARK 3 S11: -0.2622 S12: 0.2356 S13: 0.1979 REMARK 3 S21: -0.7332 S22: 0.0338 S23: -0.8379 REMARK 3 S31: -0.5256 S32: 0.4670 S33: 0.1011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8245 -7.1795 7.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.2076 REMARK 3 T33: 0.1712 T12: -0.0421 REMARK 3 T13: -0.0021 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.6677 L22: 1.4116 REMARK 3 L33: 1.6749 L12: 0.1411 REMARK 3 L13: -0.7361 L23: 0.6049 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.1124 S13: -0.0224 REMARK 3 S21: 0.0136 S22: 0.0802 S23: 0.1011 REMARK 3 S31: 0.0725 S32: -0.0330 S33: 0.0537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5429 -18.4858 4.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2596 REMARK 3 T33: 0.1978 T12: 0.0223 REMARK 3 T13: 0.0046 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.8467 L22: 2.5862 REMARK 3 L33: 5.0767 L12: -1.0465 REMARK 3 L13: -3.0634 L23: 1.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.1995 S12: -0.2088 S13: -0.3219 REMARK 3 S21: 0.2339 S22: -0.0895 S23: 0.0125 REMARK 3 S31: 0.7435 S32: 0.4693 S33: 0.0475 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7127 -7.5433 3.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2762 REMARK 3 T33: 0.2365 T12: -0.0148 REMARK 3 T13: -0.0241 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.6190 L22: 3.5518 REMARK 3 L33: 3.0440 L12: 0.4401 REMARK 3 L13: -0.1522 L23: 2.1941 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.1007 S13: -0.2149 REMARK 3 S21: -0.2378 S22: 0.1534 S23: -0.1721 REMARK 3 S31: -0.0305 S32: 0.4342 S33: -0.0673 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8463 -3.5747 18.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1708 REMARK 3 T33: 0.1323 T12: -0.0297 REMARK 3 T13: -0.0192 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.2654 L22: 1.2815 REMARK 3 L33: 1.8705 L12: 0.3962 REMARK 3 L13: 0.0472 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.0100 S13: -0.0228 REMARK 3 S21: 0.0550 S22: 0.0730 S23: -0.0003 REMARK 3 S31: 0.0398 S32: 0.0407 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1121 -1.9065 22.7837 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.2573 REMARK 3 T33: 0.1999 T12: -0.0128 REMARK 3 T13: -0.0259 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.3856 L22: 3.5738 REMARK 3 L33: 2.5461 L12: 1.9345 REMARK 3 L13: -0.7649 L23: -1.4205 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.2606 S13: -0.2270 REMARK 3 S21: 0.1093 S22: -0.0155 S23: -0.4366 REMARK 3 S31: -0.0250 S32: 0.5340 S33: 0.0435 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0232 3.0666 5.5417 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.2912 REMARK 3 T33: 0.1877 T12: -0.1048 REMARK 3 T13: 0.0207 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.4505 L22: 0.8496 REMARK 3 L33: 4.3883 L12: 0.2416 REMARK 3 L13: 2.9821 L23: 0.0703 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: 0.3746 S13: 0.1280 REMARK 3 S21: -0.1272 S22: 0.0231 S23: -0.1216 REMARK 3 S31: -0.2148 S32: 0.3768 S33: 0.0228 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1788 -4.0523 -5.2807 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.2354 REMARK 3 T33: 0.1632 T12: -0.0471 REMARK 3 T13: 0.0024 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.5932 L22: 3.3345 REMARK 3 L33: 4.1124 L12: 0.5858 REMARK 3 L13: -1.2434 L23: 1.0742 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.1700 S13: -0.1042 REMARK 3 S21: -0.5320 S22: 0.1414 S23: -0.0720 REMARK 3 S31: -0.1501 S32: 0.1630 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2948 -14.2636 -4.6809 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.3700 REMARK 3 T33: 0.3255 T12: -0.0753 REMARK 3 T13: 0.0091 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 0.1028 L22: 3.0236 REMARK 3 L33: 3.8414 L12: -0.4200 REMARK 3 L13: 0.4003 L23: -3.3636 REMARK 3 S TENSOR REMARK 3 S11: -0.2568 S12: 0.2611 S13: 0.1576 REMARK 3 S21: -0.0225 S22: 0.1808 S23: 0.9714 REMARK 3 S31: 0.2545 S32: -0.7642 S33: -0.0955 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7549 -18.3830 -4.9838 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.2046 REMARK 3 T33: 0.2082 T12: -0.0136 REMARK 3 T13: 0.0185 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 3.6895 L22: 3.5392 REMARK 3 L33: 3.7667 L12: -0.5814 REMARK 3 L13: -1.5948 L23: 1.3450 REMARK 3 S TENSOR REMARK 3 S11: -0.4655 S12: -0.0375 S13: -0.3480 REMARK 3 S21: 0.0406 S22: 0.0806 S23: 0.1596 REMARK 3 S31: 0.7049 S32: 0.0214 S33: 0.2123 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1738 -10.2537 8.6888 REMARK 3 T TENSOR REMARK 3 T11: 0.7215 T22: 0.5005 REMARK 3 T33: 0.8594 T12: -0.1407 REMARK 3 T13: 0.2347 T23: -0.2682 REMARK 3 L TENSOR REMARK 3 L11: 2.0004 L22: 2.0276 REMARK 3 L33: 1.9964 L12: 0.1440 REMARK 3 L13: -0.4832 L23: -1.1918 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.2257 S13: 0.1759 REMARK 3 S21: -0.0151 S22: -0.0638 S23: -0.0487 REMARK 3 S31: -0.0326 S32: 0.0650 S33: 0.0199 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0502 9.2539 20.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.2788 REMARK 3 T33: 0.3294 T12: 0.0877 REMARK 3 T13: -0.0525 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.7670 L22: 2.5199 REMARK 3 L33: 3.0944 L12: 1.8123 REMARK 3 L13: 0.4527 L23: 0.7542 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: 0.4143 S13: 0.2295 REMARK 3 S21: -0.4119 S22: 0.0106 S23: 0.5889 REMARK 3 S31: -0.6333 S32: -0.4239 S33: 0.2612 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2784 -7.6052 21.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1910 REMARK 3 T33: 0.2264 T12: -0.0225 REMARK 3 T13: 0.0140 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.1238 L22: 2.3716 REMARK 3 L33: 1.9546 L12: -0.0879 REMARK 3 L13: 0.0599 L23: 1.3341 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0381 S13: -0.0099 REMARK 3 S21: 0.0053 S22: -0.0195 S23: 0.2567 REMARK 3 S31: 0.0115 S32: -0.1891 S33: 0.0683 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7053 -20.8928 14.3658 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1590 REMARK 3 T33: 0.1733 T12: -0.0342 REMARK 3 T13: -0.0047 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.7322 L22: 2.9442 REMARK 3 L33: 1.6642 L12: 1.0137 REMARK 3 L13: -0.6158 L23: 0.4518 REMARK 3 S TENSOR REMARK 3 S11: -0.1512 S12: 0.0732 S13: -0.1847 REMARK 3 S21: -0.2240 S22: 0.0939 S23: -0.1774 REMARK 3 S31: 0.0951 S32: 0.0104 S33: 0.0527 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2852 -27.6190 11.7505 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.2762 REMARK 3 T33: 0.2060 T12: -0.0961 REMARK 3 T13: 0.0154 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.7740 L22: 2.3390 REMARK 3 L33: 4.5366 L12: 0.4855 REMARK 3 L13: 1.4922 L23: 0.0091 REMARK 3 S TENSOR REMARK 3 S11: -0.1992 S12: 0.2019 S13: -0.2937 REMARK 3 S21: -0.4110 S22: 0.2212 S23: 0.0860 REMARK 3 S31: 0.2799 S32: -0.3113 S33: 0.1179 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6867 -10.0174 8.5493 REMARK 3 T TENSOR REMARK 3 T11: 0.2542 T22: 0.3548 REMARK 3 T33: 0.2565 T12: 0.0062 REMARK 3 T13: -0.1636 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.3447 L22: 6.0417 REMARK 3 L33: 2.4819 L12: 1.8075 REMARK 3 L13: -0.7621 L23: -0.2652 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.2535 S13: 0.3560 REMARK 3 S21: -0.5598 S22: 0.1438 S23: 0.6452 REMARK 3 S31: -0.2740 S32: -0.4417 S33: 0.1870 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9755 3.4692 19.9785 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.1734 REMARK 3 T33: 0.2552 T12: -0.0105 REMARK 3 T13: 0.0164 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.8638 L22: 2.9213 REMARK 3 L33: 3.6052 L12: 0.3014 REMARK 3 L13: -0.1110 L23: 1.4576 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0428 S13: 0.2908 REMARK 3 S21: -0.4579 S22: 0.0027 S23: 0.0612 REMARK 3 S31: -0.6053 S32: -0.0532 S33: -0.0524 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5470 3.3230 30.1965 REMARK 3 T TENSOR REMARK 3 T11: 0.2160 T22: 0.1461 REMARK 3 T33: 0.2667 T12: -0.0002 REMARK 3 T13: 0.0669 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.1479 L22: 3.1414 REMARK 3 L33: 5.1897 L12: 1.0452 REMARK 3 L13: 0.2676 L23: 0.4207 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: -0.1085 S13: 0.3213 REMARK 3 S21: 0.0932 S22: 0.0016 S23: 0.4261 REMARK 3 S31: -0.0079 S32: -0.2555 S33: -0.0054 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7915 -11.8842 21.3062 REMARK 3 T TENSOR REMARK 3 T11: 0.4214 T22: 0.6138 REMARK 3 T33: 0.6594 T12: 0.1911 REMARK 3 T13: -0.1304 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: -9.5747 REMARK 3 L13: 2.0000 L23: -6.8198 REMARK 3 S TENSOR REMARK 3 S11: -0.5607 S12: 2.4825 S13: -3.7407 REMARK 3 S21: -1.5027 S22: 0.1575 S23: -0.5986 REMARK 3 S31: 0.8666 S32: 1.0494 S33: 0.3747 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 COPPER(II) CHLORIDE, 100 MM SODIUM CACODYLATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.81750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.81750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 452 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 7 CG CD CE NZ REMARK 480 GLU A 13 CG CD OE1 OE2 REMARK 480 LYS A 55 CG CD CE NZ REMARK 480 GLU A 120 CG CD OE1 OE2 REMARK 480 ARG A 148 NE CZ NH1 NH2 REMARK 480 GLN A 164 CG CD OE1 NE2 REMARK 480 GLU B 13 CG CD OE1 OE2 REMARK 480 LYS B 14 CG CD CE NZ REMARK 480 GLU B 52 CG CD OE1 OE2 REMARK 480 LYS B 55 CG CD CE NZ REMARK 480 LYS B 70 CG CD CE NZ REMARK 480 LYS B 132 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -85.91 -99.28 REMARK 500 LYS A 98 -62.22 -91.25 REMARK 500 LYS B 7 -87.62 -98.78 REMARK 500 LYS B 98 -69.16 -99.94 REMARK 500 ASN B 170 112.77 -161.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 541 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 85.1 REMARK 620 3 GLU B 4 OE2 170.3 97.3 REMARK 620 4 ASP B 44 OD1 107.5 22.5 74.9 REMARK 620 5 ASP B 44 OD2 105.6 21.3 76.2 4.3 REMARK 620 6 HOH B 477 O 102.2 86.7 87.3 84.2 88.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EOC RELATED DB: PDB DBREF 8EQO A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 8EQO B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQADV 8EQO ALA A 58 UNP P0AEG4 LYS 77 ENGINEERED MUTATION SEQADV 8EQO ALA B 58 UNP P0AEG4 LYS 77 ENGINEERED MUTATION SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR ALA TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR ALA TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET GOL A 201 14 HET GOL B 201 14 HET CU B 202 1 HETNAM GOL GLYCEROL HETNAM CU COPPER (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CU CU 2+ FORMUL 6 HOH *465(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 LYS A 188 1 19 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 66 GLY B 83 1 18 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.10 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.10 LINK N ALA B 1 CU CU B 202 1555 1555 2.07 LINK O ALA B 1 CU CU B 202 1555 1555 2.07 LINK OE2 GLU B 4 CU CU B 202 1555 1555 1.98 LINK OD1 ASP B 44 CU CU B 202 1555 4546 2.60 LINK OD2 ASP B 44 CU CU B 202 1555 4546 2.19 LINK CU CU B 202 O HOH B 477 1555 1555 2.70 CISPEP 1 VAL A 150 PRO A 151 0 -7.34 CISPEP 2 VAL B 150 PRO B 151 0 -7.18 CRYST1 117.635 63.090 74.408 90.00 126.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008501 0.000000 0.006325 0.00000 SCALE2 0.000000 0.015850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016751 0.00000