HEADER HYDROLASE 11-OCT-22 8ER5 TITLE CRYSTAL STRUCTURE OF NLPC/P60 DOMAIN FROM CLOSTRIDIUM INNOCUUM TITLE 2 NLPC/P60 DOMAIN-CONTAINING PROTEIN CI_01448. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLPC/P60 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [CLOSTRIDIUM] INNOCUUM 2959; SOURCE 3 ORGANISM_TAXID: 999413; SOURCE 4 GENE: HMPREF1094_01267; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS NLPC/P60 DOMAIN, PEPTIDOGLYCAN HYDROLASE, CSGID, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,G.WIERSUM,K.J.F.SATCHELL,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 15-NOV-23 8ER5 1 REMARK REVDAT 1 18-OCT-23 8ER5 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,G.WIERSUM,K.J.F.SATCHELL JRNL TITL CRYSTAL STRUCTURE OF NLPC/P60 DOMAIN FROM CLOSTRIDIUM JRNL TITL 2 INNOCUUM NLPC/P60 DOMAIN-CONTAINING PROTEIN CI_01448. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1852 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1597 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2536 ; 1.311 ; 1.621 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3682 ; 0.338 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 3.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;30.972 ;22.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ; 8.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.612 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2205 ; 0.055 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 423 ; 0.050 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7798 0.6752 13.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1484 REMARK 3 T33: 0.0862 T12: 0.0653 REMARK 3 T13: -0.0005 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.3034 L22: 0.6029 REMARK 3 L33: 1.7719 L12: -1.0204 REMARK 3 L13: -0.3377 L23: 0.2435 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: -0.0998 S13: 0.2626 REMARK 3 S21: -0.0922 S22: 0.0033 S23: -0.1190 REMARK 3 S31: -0.0512 S32: 0.3196 S33: 0.1258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8694 -4.8659 8.3772 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0821 REMARK 3 T33: 0.0615 T12: 0.0691 REMARK 3 T13: 0.0150 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.5285 L22: 1.5698 REMARK 3 L33: 2.4275 L12: 0.3622 REMARK 3 L13: -0.7166 L23: -0.3452 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: 0.0241 S13: -0.0258 REMARK 3 S21: 0.0017 S22: 0.0430 S23: 0.0830 REMARK 3 S31: 0.2150 S32: 0.0787 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9780 4.8362 17.0437 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.1014 REMARK 3 T33: 0.0602 T12: 0.0104 REMARK 3 T13: -0.0090 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.1437 L22: 1.9498 REMARK 3 L33: 4.3978 L12: -1.1796 REMARK 3 L13: -0.5757 L23: 0.0770 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0359 S13: 0.1693 REMARK 3 S21: 0.0780 S22: -0.0969 S23: -0.0951 REMARK 3 S31: -0.2356 S32: 0.3598 S33: 0.1525 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 364 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2511 -5.9213 16.9281 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.1178 REMARK 3 T33: 0.0874 T12: 0.0709 REMARK 3 T13: 0.0652 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.2678 L22: 6.0041 REMARK 3 L33: 0.8497 L12: -2.0774 REMARK 3 L13: 0.5634 L23: 0.6705 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.1116 S13: -0.1886 REMARK 3 S21: 0.1795 S22: 0.0022 S23: 0.0858 REMARK 3 S31: 0.2032 S32: 0.1804 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 376 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5189 -5.2938 22.5156 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0673 REMARK 3 T33: 0.0631 T12: 0.0729 REMARK 3 T13: 0.0340 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.6266 L22: 3.2579 REMARK 3 L33: 1.7069 L12: 2.8531 REMARK 3 L13: 0.3328 L23: 0.7493 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: -0.2015 S13: -0.0259 REMARK 3 S21: 0.0893 S22: -0.1483 S23: 0.0513 REMARK 3 S31: 0.1722 S32: 0.1058 S33: 0.1645 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 398 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4782 -4.1491 21.8639 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.1362 REMARK 3 T33: 0.0653 T12: 0.0566 REMARK 3 T13: 0.0013 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.8880 L22: 2.5174 REMARK 3 L33: 4.6712 L12: 0.7915 REMARK 3 L13: -1.6506 L23: -1.5726 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.2713 S13: -0.1790 REMARK 3 S21: 0.0192 S22: -0.2290 S23: -0.1362 REMARK 3 S31: 0.1118 S32: 0.6322 S33: 0.2379 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 290 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5219 1.9877 4.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0578 REMARK 3 T33: 0.0682 T12: 0.0261 REMARK 3 T13: 0.0059 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 9.8060 L22: 0.6848 REMARK 3 L33: 2.0675 L12: 2.3490 REMARK 3 L13: 2.9438 L23: 0.4529 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: 0.3500 S13: -0.3159 REMARK 3 S21: -0.0422 S22: 0.1166 S23: -0.0415 REMARK 3 S31: 0.0212 S32: -0.0159 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 302 B 318 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9140 16.6917 16.6134 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: 0.0653 REMARK 3 T33: 0.0484 T12: 0.0432 REMARK 3 T13: 0.0077 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.4621 L22: 6.1140 REMARK 3 L33: 2.2179 L12: -0.7808 REMARK 3 L13: 0.3121 L23: 0.4786 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.0906 S13: -0.0393 REMARK 3 S21: -0.0693 S22: -0.0735 S23: -0.0603 REMARK 3 S31: -0.1692 S32: 0.0455 S33: 0.0602 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 319 B 337 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4882 15.6570 10.8717 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0401 REMARK 3 T33: 0.0370 T12: 0.0250 REMARK 3 T13: -0.0063 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0322 L22: 3.2241 REMARK 3 L33: 4.9251 L12: -0.6293 REMARK 3 L13: -0.2865 L23: 2.0580 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0952 S13: 0.0486 REMARK 3 S21: -0.0171 S22: 0.0371 S23: -0.0723 REMARK 3 S31: -0.1875 S32: 0.1775 S33: -0.0905 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 338 B 365 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6041 10.8485 6.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.1766 REMARK 3 T33: 0.1125 T12: 0.0585 REMARK 3 T13: 0.0032 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 3.1617 L22: 0.6026 REMARK 3 L33: 2.8540 L12: 0.9732 REMARK 3 L13: -0.1409 L23: -0.9358 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: 0.1839 S13: -0.0396 REMARK 3 S21: -0.0060 S22: 0.0557 S23: 0.0044 REMARK 3 S31: -0.0840 S32: -0.1953 S33: 0.0278 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 366 B 393 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4142 14.6574 17.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.1144 REMARK 3 T33: 0.1062 T12: 0.0521 REMARK 3 T13: -0.0089 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.0450 L22: 0.6420 REMARK 3 L33: 2.2334 L12: 0.7426 REMARK 3 L13: 0.4000 L23: 0.7270 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0382 S13: -0.0544 REMARK 3 S21: 0.0716 S22: -0.0638 S23: 0.0223 REMARK 3 S31: -0.1221 S32: -0.0987 S33: 0.0506 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 394 B 414 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2125 12.1360 15.1135 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0672 REMARK 3 T33: 0.0422 T12: 0.0147 REMARK 3 T13: -0.0052 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.7059 L22: 1.2408 REMARK 3 L33: 4.8050 L12: -0.8592 REMARK 3 L13: -1.1436 L23: 0.6730 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.1976 S13: -0.0887 REMARK 3 S21: 0.0586 S22: -0.1098 S23: 0.0608 REMARK 3 S31: -0.1052 S32: -0.4844 S33: 0.1300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8ER5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.13700 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.85600 REMARK 200 R SYM FOR SHELL (I) : 0.85600 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10.0 MG/ML, 0.25M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS PH 8.3; SCREEN: AMSO4 (G4), 1.0M AMMONIUM REMARK 280 SULFATE, 0.1M HEPES SODIUM SALT PH 5.6, 2% (W/V) PEG 400; CRYO: REMARK 280 2M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.48000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.96000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.96000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 318 32.48 -143.04 REMARK 500 THR A 386 -76.81 -86.21 REMARK 500 SER B 318 34.77 -144.18 REMARK 500 THR B 386 -78.60 -90.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP98324.401 RELATED DB: TARGETTRACK DBREF 8ER5 A 289 414 UNP N9VDX5 N9VDX5_CLOIN 289 414 DBREF 8ER5 B 289 414 UNP N9VDX5 N9VDX5_CLOIN 289 414 SEQRES 1 A 126 ASN LEU ASN PRO ALA GLY SER GLY SER ASN SER SER ALA SEQRES 2 A 126 ALA GLY ILE ALA ALA SER MSE VAL GLY SER PRO TYR VAL SEQRES 3 A 126 TRP GLY GLY SER SER PRO ALA GLY PHE ASP CYS SER GLY SEQRES 4 A 126 LEU THR SER TYR ALA TYR ALA GLN ALA GLY ILE SER ILE SEQRES 5 A 126 PRO ARG THR ALA GLY GLY GLN ALA SER VAL GLY SER ALA SEQRES 6 A 126 VAL SER TYR GLY ASN MSE GLN PRO GLY ASP LEU ILE VAL SEQRES 7 A 126 TRP SER GLY GLY ALA HIS VAL SER ILE TYR VAL GLY GLY SEQRES 8 A 126 GLY GLN MSE VAL HIS ALA THR ASN PRO SER THR GLY VAL SEQRES 9 A 126 ILE THR SER SER VAL SER PHE TRP SER ASN ASN SER GLY SEQRES 10 A 126 GLN SER ILE THR ALA ILE ARG ARG PRO SEQRES 1 B 126 ASN LEU ASN PRO ALA GLY SER GLY SER ASN SER SER ALA SEQRES 2 B 126 ALA GLY ILE ALA ALA SER MSE VAL GLY SER PRO TYR VAL SEQRES 3 B 126 TRP GLY GLY SER SER PRO ALA GLY PHE ASP CYS SER GLY SEQRES 4 B 126 LEU THR SER TYR ALA TYR ALA GLN ALA GLY ILE SER ILE SEQRES 5 B 126 PRO ARG THR ALA GLY GLY GLN ALA SER VAL GLY SER ALA SEQRES 6 B 126 VAL SER TYR GLY ASN MSE GLN PRO GLY ASP LEU ILE VAL SEQRES 7 B 126 TRP SER GLY GLY ALA HIS VAL SER ILE TYR VAL GLY GLY SEQRES 8 B 126 GLY GLN MSE VAL HIS ALA THR ASN PRO SER THR GLY VAL SEQRES 9 B 126 ILE THR SER SER VAL SER PHE TRP SER ASN ASN SER GLY SEQRES 10 B 126 GLN SER ILE THR ALA ILE ARG ARG PRO MODRES 8ER5 MSE A 308 MET MODIFIED RESIDUE MODRES 8ER5 MSE A 359 MET MODIFIED RESIDUE MODRES 8ER5 MSE A 382 MET MODIFIED RESIDUE MODRES 8ER5 MSE B 308 MET MODIFIED RESIDUE MODRES 8ER5 MSE B 359 MET MODIFIED RESIDUE MODRES 8ER5 MSE B 382 MET MODIFIED RESIDUE HET MSE A 308 8 HET MSE A 359 8 HET MSE A 382 8 HET MSE B 308 8 HET MSE B 359 8 HET MSE B 382 8 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET EDO A 507 4 HET GOL B 501 6 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 10(O4 S 2-) FORMUL 9 EDO C2 H6 O2 FORMUL 10 GOL C3 H8 O3 FORMUL 15 HOH *280(H2 O) HELIX 1 AA1 SER A 295 MSE A 308 1 14 HELIX 2 AA2 ASP A 324 ALA A 336 1 13 HELIX 3 AA3 THR A 343 ALA A 348 1 6 HELIX 4 AA4 SER A 355 MSE A 359 5 5 HELIX 5 AA5 VAL A 397 SER A 404 1 8 HELIX 6 AA6 SER B 295 MSE B 308 1 14 HELIX 7 AA7 ASP B 324 ALA B 336 1 13 HELIX 8 AA8 THR B 343 ALA B 348 1 6 HELIX 9 AA9 SER B 355 MSE B 359 5 5 HELIX 10 AB1 GLY B 369 ALA B 371 5 3 HELIX 11 AB2 VAL B 397 SER B 404 1 8 SHEET 1 AA1 2 SER A 318 SER A 319 0 SHEET 2 AA1 2 GLY A 322 PHE A 323 -1 O GLY A 322 N SER A 319 SHEET 1 AA2 6 SER A 352 ALA A 353 0 SHEET 2 AA2 6 ILE A 408 ARG A 413 -1 O ARG A 413 N SER A 352 SHEET 3 AA2 6 LEU A 364 TRP A 367 -1 N VAL A 366 O ALA A 410 SHEET 4 AA2 6 VAL A 373 GLY A 378 -1 O SER A 374 N ILE A 365 SHEET 5 AA2 6 GLN A 381 ALA A 385 -1 O VAL A 383 N ILE A 375 SHEET 6 AA2 6 VAL A 392 SER A 396 -1 O SER A 395 N MSE A 382 SHEET 1 AA3 2 SER B 318 SER B 319 0 SHEET 2 AA3 2 GLY B 322 PHE B 323 -1 O GLY B 322 N SER B 319 SHEET 1 AA4 6 SER B 352 ALA B 353 0 SHEET 2 AA4 6 ILE B 408 ARG B 413 -1 O ARG B 413 N SER B 352 SHEET 3 AA4 6 LEU B 364 TRP B 367 -1 N LEU B 364 O ARG B 412 SHEET 4 AA4 6 VAL B 373 GLY B 378 -1 O SER B 374 N ILE B 365 SHEET 5 AA4 6 GLN B 381 ALA B 385 -1 O VAL B 383 N ILE B 375 SHEET 6 AA4 6 VAL B 392 SER B 396 -1 O SER B 395 N MSE B 382 LINK C SER A 307 N MSE A 308 1555 1555 1.34 LINK C MSE A 308 N VAL A 309 1555 1555 1.34 LINK C ASN A 358 N MSE A 359 1555 1555 1.34 LINK C MSE A 359 N GLN A 360 1555 1555 1.34 LINK C GLN A 381 N MSE A 382 1555 1555 1.33 LINK C MSE A 382 N VAL A 383 1555 1555 1.34 LINK C SER B 307 N MSE B 308 1555 1555 1.34 LINK C MSE B 308 N VAL B 309 1555 1555 1.34 LINK C ASN B 358 N MSE B 359 1555 1555 1.33 LINK C MSE B 359 N GLN B 360 1555 1555 1.34 LINK C GLN B 381 N MSE B 382 1555 1555 1.34 LINK C MSE B 382 N VAL B 383 1555 1555 1.33 CRYST1 51.954 51.954 157.440 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019248 0.011113 0.000000 0.00000 SCALE2 0.000000 0.022225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006352 0.00000