HEADER VIRUS/DNA 11-OCT-22 8ER8 TITLE ACHETA DOMESTICUS SEGMENTED DENSOVIRUS, MATURE VIRION CAPSID STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACHETA DOMESTICUS SEGMENTED DENSOVIRUS MAJOR CAPSID COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*AP*AP*TP*AP*A)-3'); COMPND 7 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCLASSIFIED DENSOVIRINAE; SOURCE 3 ORGANISM_TAXID: 185880; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: UNCLASSIFIED DENSOVIRINAE; SOURCE 6 ORGANISM_TAXID: 185880 KEYWDS PARVOVIRUS, DENSOVIRUS, VIRUS CAPSID, VIRION, INSECT VIRUS, CAPSID, KEYWDS 2 INVERTEBRATE, VIRUS-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.PENZES,R.MCKENNA,P.TIJSSEN REVDAT 2 21-FEB-24 8ER8 1 JRNL REMARK REVDAT 1 09-NOV-22 8ER8 0 JRNL AUTH J.J.PENZES,H.T.PHAM,P.CHIPMAN,E.W.SMITH,R.MCKENNA,P.TIJSSEN JRNL TITL BIPARTITE GENOME AND STRUCTURAL ORGANIZATION OF THE JRNL TITL 2 PARVOVIRUS ACHETA DOMESTICUS SEGMENTED DENSOVIRUS. JRNL REF NAT COMMUN V. 14 3515 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37316488 JRNL DOI 10.1038/S41467-023-38875-X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CISTEM, CTFFIND, UCSF CHIMERA, CISTEM, REMARK 3 CISTEM, CISTEM, COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3UX1 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.300 REMARK 3 NUMBER OF PARTICLES : 150469 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ER8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000268836. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : UNCLASSIFIED DENSOVIRINAE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1411 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 650.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : OTHER REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 7 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 9 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 9 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 14 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 15 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 18 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 20 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 21 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 21 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 26 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 26 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 26 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 28 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 28 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 29 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 34 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 36 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 38 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 41 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 41 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 44 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 44 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 45 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 47 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 47 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 48 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 51 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 51 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 51 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 52 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 52 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 53 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 53 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 54 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 54 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 54 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 56 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 56 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 60 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 60 0.809017 0.500000 -0.309017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 N B 608 REMARK 465 N B 609 REMARK 465 N B 610 REMARK 465 N B 611 REMARK 465 N B 612 REMARK 465 N B 613 REMARK 465 N B 614 REMARK 465 N B 615 REMARK 465 N B 616 REMARK 465 N B 617 REMARK 465 N B 618 REMARK 465 N B 619 REMARK 465 N B 620 REMARK 465 N B 621 REMARK 465 N B 622 REMARK 465 N B 623 REMARK 465 N B 624 REMARK 465 N B 625 REMARK 465 N B 626 REMARK 465 N B 627 REMARK 465 N B 628 REMARK 465 N B 629 REMARK 465 N B 630 REMARK 465 N B 631 REMARK 465 N B 632 REMARK 465 N B 633 REMARK 465 N B 634 REMARK 465 N B 635 REMARK 465 N B 636 REMARK 465 N B 637 REMARK 465 N B 638 REMARK 465 N B 639 REMARK 465 N B 640 REMARK 465 N B 641 REMARK 465 N B 642 REMARK 465 N B 643 REMARK 465 N B 644 REMARK 465 N B 645 REMARK 465 N B 646 REMARK 465 N B 647 REMARK 465 N B 648 REMARK 465 N B 649 REMARK 465 N B 650 REMARK 465 N B 651 REMARK 465 N B 652 REMARK 465 N B 653 REMARK 465 N B 654 REMARK 465 N B 655 REMARK 465 N B 656 REMARK 465 N B 657 REMARK 465 N B 658 REMARK 465 N B 659 REMARK 465 N B 660 REMARK 465 N B 661 REMARK 465 N B 662 REMARK 465 N B 663 REMARK 465 N B 664 REMARK 465 N B 665 REMARK 465 N B 666 REMARK 465 N B 667 REMARK 465 N B 668 REMARK 465 N B 669 REMARK 465 N B 670 REMARK 465 N B 671 REMARK 465 N B 672 REMARK 465 N B 673 REMARK 465 N B 674 REMARK 465 N B 675 REMARK 465 N B 676 REMARK 465 N B 677 REMARK 465 N B 678 REMARK 465 N B 679 REMARK 465 N B 680 REMARK 465 N B 681 REMARK 465 N B 682 REMARK 465 N B 683 REMARK 465 N B 684 REMARK 465 N B 685 REMARK 465 N B 686 REMARK 465 N B 687 REMARK 465 N B 688 REMARK 465 N B 689 REMARK 465 N B 690 REMARK 465 N B 691 REMARK 465 N B 692 REMARK 465 N B 693 REMARK 465 N B 694 REMARK 465 N B 695 REMARK 465 N B 696 REMARK 465 N B 697 REMARK 465 N B 698 REMARK 465 N B 699 REMARK 465 N B 700 REMARK 465 N B 701 REMARK 465 N B 702 REMARK 465 N B 703 REMARK 465 N B 704 REMARK 465 N B 705 REMARK 465 N B 706 REMARK 465 N B 707 REMARK 465 N B 708 REMARK 465 N B 709 REMARK 465 N B 710 REMARK 465 N B 711 REMARK 465 N B 712 REMARK 465 N B 713 REMARK 465 N B 714 REMARK 465 N B 715 REMARK 465 N B 716 REMARK 465 N B 717 REMARK 465 N B 718 REMARK 465 N B 719 REMARK 465 N B 720 REMARK 465 N B 721 REMARK 465 N B 722 REMARK 465 N B 723 REMARK 465 N B 724 REMARK 465 N B 725 REMARK 465 N B 726 REMARK 465 N B 727 REMARK 465 N B 728 REMARK 465 N B 729 REMARK 465 N B 730 REMARK 465 N B 731 REMARK 465 N B 732 REMARK 465 N B 733 REMARK 465 N B 734 REMARK 465 N B 735 REMARK 465 N B 736 REMARK 465 N B 737 REMARK 465 N B 738 REMARK 465 N B 739 REMARK 465 N B 740 REMARK 465 N B 741 REMARK 465 N B 742 REMARK 465 N B 743 REMARK 465 N B 744 REMARK 465 N B 745 REMARK 465 N B 746 REMARK 465 N B 747 REMARK 465 N B 748 REMARK 465 N B 749 REMARK 465 N B 750 REMARK 465 N B 751 REMARK 465 N B 752 REMARK 465 N B 753 REMARK 465 N B 754 REMARK 465 N B 755 REMARK 465 N B 756 REMARK 465 N B 757 REMARK 465 N B 758 REMARK 465 N B 759 REMARK 465 N B 760 REMARK 465 N B 761 REMARK 465 N B 762 REMARK 465 N B 763 REMARK 465 N B 764 REMARK 465 N B 765 REMARK 465 N B 766 REMARK 465 N B 767 REMARK 465 N B 768 REMARK 465 N B 769 REMARK 465 N B 770 REMARK 465 N B 771 REMARK 465 N B 772 REMARK 465 N B 773 REMARK 465 N B 774 REMARK 465 N B 775 REMARK 465 N B 776 REMARK 465 N B 777 REMARK 465 N B 778 REMARK 465 N B 779 REMARK 465 N B 780 REMARK 465 N B 781 REMARK 465 N B 782 REMARK 465 N B 783 REMARK 465 N B 784 REMARK 465 N B 785 REMARK 465 N B 786 REMARK 465 N B 787 REMARK 465 N B 788 REMARK 465 N B 789 REMARK 465 N B 790 REMARK 465 N B 791 REMARK 465 N B 792 REMARK 465 N B 793 REMARK 465 N B 794 REMARK 465 N B 795 REMARK 465 N B 796 REMARK 465 N B 797 REMARK 465 N B 798 REMARK 465 N B 799 REMARK 465 DG B 800 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 226 HH12 ARG A 290 1.42 REMARK 500 O LYS A 76 HD22 ASN A 116 1.52 REMARK 500 H GLU A 237 O LEU A 341 1.53 REMARK 500 O LYS A 97 H LEU A 297 1.53 REMARK 500 HE21 GLN A 266 O ILE A 268 1.55 REMARK 500 HE21 GLN A 102 O PRO A 293 1.56 REMARK 500 O ILE A 128 H LYS A 328 1.57 REMARK 500 H VAL A 132 O TRP A 236 1.57 REMARK 500 H ASP A 304 O ASP A 307 1.59 REMARK 500 O LYS A 76 ND2 ASN A 116 1.98 REMARK 500 NE2 GLN A 102 O PRO A 293 2.05 REMARK 500 O VAL A 197 OG1 THR A 200 2.05 REMARK 500 OE2 GLU A 237 NZ LYS A 273 2.08 REMARK 500 NH2 ARG A 133 OD2 ASP A 228 2.10 REMARK 500 O GLY A 91 NZ LYS A 97 2.12 REMARK 500 OD1 ASP A 84 OG1 THR A 86 2.16 REMARK 500 O ASP A 226 NH1 ARG A 290 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 606 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 606 C5' - C4' - O4' ANGL. DEV. = 11.4 DEGREES REMARK 500 DG B 606 C1' - O4' - C4' ANGL. DEV. = -13.9 DEGREES REMARK 500 DG B 606 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 90 -116.26 51.17 REMARK 500 THR A 93 -178.83 -171.11 REMARK 500 THR A 185 -62.29 -128.33 REMARK 500 ASN A 206 -72.92 -121.86 REMARK 500 PRO A 293 -176.02 -61.99 REMARK 500 ASP A 307 -144.54 51.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 229 LEU A 230 -146.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28550 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-28553 RELATED DB: EMDB DBREF 8ER8 A 47 376 PDB 8ER8 8ER8 47 376 DBREF 8ER8 B 606 805 PDB 8ER8 8ER8 606 805 SEQRES 1 A 330 THR LYS GLU GLY TYR GLY LYS HIS ILE THR SER MET HIS SEQRES 2 A 330 VAL ARG ASN ILE PHE ASN GLN GLY ASN GLN VAL ILE ARG SEQRES 3 A 330 ASN ILE VAL LYS GLN GLN ARG TYR GLU LEU LEU ASP PHE SEQRES 4 A 330 THR GLY THR GLU ALA GLY THR THR ASN LEU PRO LYS ILE SEQRES 5 A 330 ILE PRO TYR GLN CYS ILE TRP TRP ARG GLY LEU GLN ASN SEQRES 6 A 330 ALA ALA ASN VAL ASN GLN THR ILE ASN ASN MET ILE ALA SEQRES 7 A 330 LEU ASN THR ILE SER TYR GLY VAL ARG PHE LEU LYS ALA SEQRES 8 A 330 LYS LEU CYS ILE GLU VAL TYR ALA VAL THR ARG LYS ARG SEQRES 9 A 330 LEU ILE GLN THR GLY ALA THR SER TYR TYR THR ASP ASP SEQRES 10 A 330 PHE GLU GLN GLY GLN ASN LEU PHE ILE GLY TRP ALA ASP SEQRES 11 A 330 ARG LYS ALA GLU SER ILE PRO ILE THR THR PRO ALA ASP SEQRES 12 A 330 LEU ASP GLU THR LYS LEU THR VAL ALA ASN THR THR LEU SEQRES 13 A 330 PHE ASP ALA ASN ASN ASP ASN ILE THR LYS GLU GLU VAL SEQRES 14 A 330 PRO THR ARG GLU LYS TRP CYS HIS THR TRP ASP LEU ASP SEQRES 15 A 330 VAL LEU ASN HIS ASN TYR LEU TRP GLU PRO ASN ASN LEU SEQRES 16 A 330 ASP SER GLN TRP THR LEU ILE PRO GLY ALA GLN ALA VAL SEQRES 17 A 330 GLN PRO THR ALA THR PRO ILE GLY PRO THR TYR GLN GLU SEQRES 18 A 330 ILE VAL ILE ALA THR LYS ALA ILE GLY ALA ASN GLU SER SEQRES 19 A 330 ALA LEU VAL THR THR ILE GLN ASP ARG ARG SER TYR PRO SEQRES 20 A 330 ARG LEU MET LEU SER GLN PRO GLN ILE LYS ASP GLU THR SEQRES 21 A 330 ASP THR MET LYS PHE LYS TYR GLN ILE ARG ILE SER THR SEQRES 22 A 330 GLU LEU GLU MET GLU HIS HIS ILE LYS PRO ASP ILE ALA SEQRES 23 A 330 ASN PRO TRP LEU THR ARG GLN THR LEU PRO LEU PRO ALA SEQRES 24 A 330 LEU SER GLY ASP GLY THR THR ARG TYR VAL PRO CYS VAL SEQRES 25 A 330 PRO TYR GLU THR HIS VAL SER GLN ARG ASN TRP ASN HIS SEQRES 26 A 330 VAL GLY GLU TYR LEU SEQRES 1 B 199 DG N N N N N N N N N N N N SEQRES 2 B 199 N N N N N N N N N N N N N SEQRES 3 B 199 N N N N N N N N N N N N N SEQRES 4 B 199 N N N N N N N N N N N N N SEQRES 5 B 199 N N N N N N N N N N N N N SEQRES 6 B 199 N N N N N N N N N N N N N SEQRES 7 B 199 N N N N N N N N N N N N N SEQRES 8 B 199 N N N N N N N N N N N N N SEQRES 9 B 199 N N N N N N N N N N N N N SEQRES 10 B 199 N N N N N N N N N N N N N SEQRES 11 B 199 N N N N N N N N N N N N N SEQRES 12 B 199 N N N N N N N N N N N N N SEQRES 13 B 199 N N N N N N N N N N N N N SEQRES 14 B 199 N N N N N N N N N N N N N SEQRES 15 B 199 N N N N N N N N N N N DG DA SEQRES 16 B 199 DA DT DA DA HELIX 1 AA1 ASN A 116 ILE A 128 1 13 HELIX 2 AA2 GLY A 262 GLN A 266 5 5 HELIX 3 AA3 ASN A 333 ARG A 338 5 6 SHEET 1 AA1 4 ILE A 71 ASP A 84 0 SHEET 2 AA1 4 LYS A 310 ILE A 327 -1 O HIS A 325 N ILE A 71 SHEET 3 AA1 4 SER A 129 THR A 154 -1 N CYS A 140 O SER A 318 SHEET 4 AA1 4 THR A 157 PHE A 164 -1 O TYR A 159 N ILE A 152 SHEET 1 AA2 4 ILE A 71 ASP A 84 0 SHEET 2 AA2 4 LYS A 310 ILE A 327 -1 O HIS A 325 N ILE A 71 SHEET 3 AA2 4 SER A 129 THR A 154 -1 N CYS A 140 O SER A 318 SHEET 4 AA2 4 LYS A 220 TRP A 225 -1 O TRP A 225 N ALA A 137 SHEET 1 AA3 4 LYS A 97 ILE A 99 0 SHEET 2 AA3 4 ARG A 294 SER A 298 -1 O LEU A 297 N LYS A 97 SHEET 3 AA3 4 LEU A 170 ALA A 175 -1 N PHE A 171 O SER A 298 SHEET 4 AA3 4 ILE A 210 VAL A 215 -1 O GLU A 213 N ILE A 172 SHEET 1 AA4 2 GLU A 180 ILE A 184 0 SHEET 2 AA4 2 ARG A 353 CYS A 357 -1 O ARG A 353 N ILE A 184 SHEET 1 AA5 2 LEU A 235 TRP A 236 0 SHEET 2 AA5 2 THR A 340 LEU A 341 1 O LEU A 341 N LEU A 235 SHEET 1 AA6 2 ILE A 268 ILE A 270 0 SHEET 2 AA6 2 THR A 284 ILE A 286 -1 O THR A 285 N VAL A 269 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000