HEADER VIRAL PROTEIN 11-OCT-22 8ERI TITLE HTLV-1 CAPSID PROTEIN FULL-LENGTH CAVEAT 8ERI THE DISTANCE BETWEEN RESIDUE B GLY 7 AND RESIDUE B PRO 9 IS CAVEAT 2 8ERI 8.58 ANGSTROM. BUT THERE IS ONLY 1 RESIDUE (NOT ENOUGH CAVEAT 3 8ERI SEQUENCE) TO COVER THE GAP REGION. THE DISTANCE BETWEEN CAVEAT 4 8ERI RESIDUE C HIS 6 AND RESIDUE C VAL 8 IS 8.17 ANGSTROM. BUT CAVEAT 5 8ERI THERE IS ONLY 1 RESIDUE (NOT ENOUGH SEQUENCE) TO COVER THE CAVEAT 6 8ERI GAP REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HTLV-1 SUBTYPE C; SOURCE 3 ORGANISM_TAXID: 402044; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-30A(+) KEYWDS CAPSID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.J.YU,N.LI,D.A.JACQUES REVDAT 1 18-OCT-23 8ERI 0 JRNL AUTH R.J.YU,N.LI,D.A.JACQUES JRNL TITL HTLV-1 CAPSID PROTEIN FULL-LENGTH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6300 - 5.2900 1.00 2601 139 0.2501 0.2894 REMARK 3 2 5.2900 - 4.2000 1.00 2538 139 0.2207 0.2835 REMARK 3 3 4.2000 - 3.6700 1.00 2494 131 0.2330 0.2498 REMARK 3 4 3.6700 - 3.3300 1.00 2461 143 0.2351 0.2976 REMARK 3 5 3.3300 - 3.0900 1.00 2462 138 0.2479 0.2781 REMARK 3 6 3.0900 - 2.9100 1.00 2489 132 0.2757 0.2976 REMARK 3 7 2.9100 - 2.7600 1.00 2439 151 0.2421 0.2543 REMARK 3 8 2.7600 - 2.6400 1.00 2445 129 0.2470 0.2626 REMARK 3 9 2.6400 - 2.5400 1.00 2462 145 0.2748 0.3142 REMARK 3 10 2.5400 - 2.4500 1.00 2452 126 0.3076 0.2849 REMARK 3 11 2.4500 - 2.3800 1.00 2423 136 0.3122 0.3553 REMARK 3 12 2.3800 - 2.3100 1.00 2454 127 0.3153 0.3805 REMARK 3 13 2.3100 - 2.2500 0.91 2207 135 0.3491 0.3994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 118.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8075 -21.4129 52.7582 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.3787 REMARK 3 T33: 0.7307 T12: 0.0098 REMARK 3 T13: 0.0829 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 3.8895 L22: 5.9664 REMARK 3 L33: 3.6454 L12: 0.1023 REMARK 3 L13: 2.8291 L23: -0.9625 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.3591 S13: -0.6414 REMARK 3 S21: 0.0458 S22: 0.0655 S23: 0.3515 REMARK 3 S31: 1.2708 S32: -1.0417 S33: -0.1115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6382 -11.1824 54.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2642 REMARK 3 T33: 0.6433 T12: 0.0127 REMARK 3 T13: 0.0336 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.5085 L22: 3.0773 REMARK 3 L33: 5.3739 L12: 0.5757 REMARK 3 L13: 1.9341 L23: 0.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.2067 S12: 0.0473 S13: 0.5660 REMARK 3 S21: -0.1179 S22: -0.0800 S23: -0.0694 REMARK 3 S31: -0.2970 S32: 0.2380 S33: 0.2499 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3163 -6.6530 25.1013 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: -0.0175 REMARK 3 T33: -0.1236 T12: 0.0689 REMARK 3 T13: -0.2206 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 5.1029 L22: 2.4946 REMARK 3 L33: 3.9710 L12: 0.9827 REMARK 3 L13: -0.4571 L23: -0.2602 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.4699 S13: -1.3712 REMARK 3 S21: 0.0931 S22: -0.2687 S23: 0.2687 REMARK 3 S31: 0.6615 S32: 0.0603 S33: 0.1754 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7435 -0.4258 12.6767 REMARK 3 T TENSOR REMARK 3 T11: 2.6406 T22: 1.7739 REMARK 3 T33: 1.6610 T12: -0.2075 REMARK 3 T13: -0.5431 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.3994 L22: 9.0116 REMARK 3 L33: 6.5285 L12: 2.8243 REMARK 3 L13: 1.2153 L23: -4.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.5733 S12: 0.6563 S13: 0.2431 REMARK 3 S21: 0.3175 S22: 1.2261 S23: 0.8792 REMARK 3 S31: -2.3268 S32: 1.3520 S33: -0.9324 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5018 -5.9466 54.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2726 REMARK 3 T33: 0.6629 T12: -0.0088 REMARK 3 T13: -0.0178 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 2.6129 L22: 2.8981 REMARK 3 L33: 5.0045 L12: -0.1464 REMARK 3 L13: 0.5209 L23: 1.7112 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0588 S13: 0.0705 REMARK 3 S21: -0.0518 S22: -0.0633 S23: 0.1665 REMARK 3 S31: -0.1421 S32: -0.0484 S33: 0.1014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3064 -7.8614 19.9647 REMARK 3 T TENSOR REMARK 3 T11: 1.0888 T22: 1.4759 REMARK 3 T33: 0.5694 T12: 0.1441 REMARK 3 T13: -0.0482 T23: -0.3390 REMARK 3 L TENSOR REMARK 3 L11: 0.6367 L22: 1.8109 REMARK 3 L33: 8.5254 L12: -0.6649 REMARK 3 L13: 0.3443 L23: -0.6822 REMARK 3 S TENSOR REMARK 3 S11: 0.3104 S12: 0.9707 S13: -0.6619 REMARK 3 S21: -0.7659 S22: -0.1205 S23: -0.2294 REMARK 3 S31: 0.4610 S32: -0.3273 S33: -0.2001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0943 -24.2129 54.3851 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2117 REMARK 3 T33: 0.6132 T12: -0.0169 REMARK 3 T13: -0.0408 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.0016 L22: 2.5479 REMARK 3 L33: 5.7143 L12: -0.7605 REMARK 3 L13: -1.4873 L23: 1.5187 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: 0.0916 S13: -0.3222 REMARK 3 S21: 0.0092 S22: 0.0182 S23: 0.1463 REMARK 3 S31: 0.0673 S32: -0.1664 S33: 0.1203 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 124 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1339 -36.0053 20.2216 REMARK 3 T TENSOR REMARK 3 T11: 1.1357 T22: 1.2694 REMARK 3 T33: 0.8752 T12: -0.2848 REMARK 3 T13: 0.1922 T23: -0.1565 REMARK 3 L TENSOR REMARK 3 L11: 6.9044 L22: 7.9281 REMARK 3 L33: 8.3070 L12: 0.0150 REMARK 3 L13: 3.1897 L23: 1.9512 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: 1.6606 S13: -0.4460 REMARK 3 S21: -1.4152 S22: 0.4711 S23: -2.1220 REMARK 3 S31: 0.5743 S32: 0.4519 S33: -0.0483 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ERI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000268570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 48.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: ALPHAFOLD2 PREDICTION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, PH 6.0 8% 2-PROPANOL REMARK 280 23% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.33150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 148.67000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.33150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 148.67000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.33150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 148.67000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.33150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 148.67000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 148.67000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 148.67000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 148.67000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 148.67000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.33150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.33150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 64.33150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 37.03950 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 64.33150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 8 REMARK 465 LYS A 208 REMARK 465 ASP A 209 REMARK 465 LYS A 210 REMARK 465 THR A 211 REMARK 465 LYS A 212 REMARK 465 VAL A 213 REMARK 465 LEU A 214 REMARK 465 VAL B 8 REMARK 465 LYS B 208 REMARK 465 ASP B 209 REMARK 465 LYS B 210 REMARK 465 THR B 211 REMARK 465 LYS B 212 REMARK 465 VAL B 213 REMARK 465 LEU B 214 REMARK 465 GLY C 7 REMARK 465 LYS C 208 REMARK 465 ASP C 209 REMARK 465 LYS C 210 REMARK 465 THR C 211 REMARK 465 LYS C 212 REMARK 465 VAL C 213 REMARK 465 LEU C 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 165 H LEU C 169 1.49 REMARK 500 OE2 GLU B 26 HH TYR C 61 1.54 REMARK 500 O ASN B 178 H GLN B 182 1.54 REMARK 500 O MET B 198 H ALA B 201 1.56 REMARK 500 O PRO C 194 H ASP C 197 1.59 REMARK 500 OE1 GLN A 16 NZ LYS A 18 2.16 REMARK 500 O LEU A 185 NH1 ARG A 188 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 -130.96 55.60 REMARK 500 TYR A 174 -63.46 -105.45 REMARK 500 LEU A 184 33.08 -95.93 REMARK 500 THR A 191 -159.80 -134.55 REMARK 500 SER B 28 -122.95 56.98 REMARK 500 LEU B 140 -107.72 50.15 REMARK 500 ASN B 192 -72.89 -117.95 REMARK 500 PRO B 194 -6.63 -57.51 REMARK 500 LEU B 199 -39.45 -38.90 REMARK 500 SER C 28 -117.77 55.08 REMARK 500 GLN C 106 62.83 -102.28 REMARK 500 LEU C 140 139.18 -172.87 REMARK 500 ALA C 187 68.48 69.55 REMARK 500 LEU C 195 -38.82 -37.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 335 DISTANCE = 6.32 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ERE RELATED DB: PDB REMARK 900 8ERE IS THE TRICLINIC CRYSTAL FORM OF HTLV-1 CAPSID PROTEIN N- REMARK 900 TERMINAL DOMAIN. REMARK 900 RELATED ID: 8ERF RELATED DB: PDB REMARK 900 8ERF IS THE ORTHORHOMBIC CRYSTAL FORM OF HTLV-1 CAPSID PROTEIN N- REMARK 900 TERMINAL DOMAIN. REMARK 900 RELATED ID: 8ERG RELATED DB: PDB REMARK 900 8ERG IS THE HEXAGONAL CRYSTAL FORM OF HTLV-1 CAPSID PROTEIN N- REMARK 900 TERMINAL DOMAIN. REMARK 900 RELATED ID: 8ERH RELATED DB: PDB REMARK 900 8ERH IS THE C-TERMINAL DOMAIN OF HTLV-1 CAPSID PROTEIN. DBREF 8ERI A 1 214 UNP U3RC60 U3RC60_9DELA 131 344 DBREF 8ERI B 1 214 UNP U3RC60 U3RC60_9DELA 131 344 DBREF 8ERI C 1 214 UNP U3RC60 U3RC60_9DELA 131 344 SEQRES 1 A 214 PRO VAL MET HIS PRO HIS GLY VAL PRO PRO SER HIS ARG SEQRES 2 A 214 PRO TRP GLN MET LYS ASP LEU GLN ALA ILE LYS GLN GLU SEQRES 3 A 214 VAL SER GLN ALA ALA PRO GLY SER PRO GLN PHE MET GLN SEQRES 4 A 214 THR ILE ARG LEU ALA VAL GLN GLN PHE ASP PRO THR ALA SEQRES 5 A 214 LYS ASP LEU GLN ASP LEU LEU GLN TYR LEU CYS SER SER SEQRES 6 A 214 LEU VAL ALA SER LEU HIS HIS GLN GLN LEU ASP SER LEU SEQRES 7 A 214 ILE SER GLU ALA GLU THR ARG GLY ILE THR GLY TYR ASN SEQRES 8 A 214 PRO LEU ALA GLY PRO LEU ARG VAL GLN ALA ASN ASN PRO SEQRES 9 A 214 GLN GLN GLN GLY LEU ARG ARG GLU TYR GLN GLN LEU TRP SEQRES 10 A 214 LEU THR ALA PHE ALA ALA LEU PRO GLY SER ALA LYS ASP SEQRES 11 A 214 PRO SER TRP ALA SER ILE LEU GLN GLY LEU GLU GLU PRO SEQRES 12 A 214 TYR HIS THR PHE VAL GLU ARG LEU ASN VAL ALA LEU ASP SEQRES 13 A 214 ASN GLY LEU PRO GLU GLY THR PRO LYS ASP PRO ILE LEU SEQRES 14 A 214 ARG SER LEU ALA TYR SER ASN ALA ASN LYS GLU CYS GLN SEQRES 15 A 214 LYS LEU LEU GLN ALA ARG GLY HIS THR ASN SER PRO LEU SEQRES 16 A 214 GLY ASP MET LEU ARG ALA CYS GLN ALA TRP THR PRO LYS SEQRES 17 A 214 ASP LYS THR LYS VAL LEU SEQRES 1 B 214 PRO VAL MET HIS PRO HIS GLY VAL PRO PRO SER HIS ARG SEQRES 2 B 214 PRO TRP GLN MET LYS ASP LEU GLN ALA ILE LYS GLN GLU SEQRES 3 B 214 VAL SER GLN ALA ALA PRO GLY SER PRO GLN PHE MET GLN SEQRES 4 B 214 THR ILE ARG LEU ALA VAL GLN GLN PHE ASP PRO THR ALA SEQRES 5 B 214 LYS ASP LEU GLN ASP LEU LEU GLN TYR LEU CYS SER SER SEQRES 6 B 214 LEU VAL ALA SER LEU HIS HIS GLN GLN LEU ASP SER LEU SEQRES 7 B 214 ILE SER GLU ALA GLU THR ARG GLY ILE THR GLY TYR ASN SEQRES 8 B 214 PRO LEU ALA GLY PRO LEU ARG VAL GLN ALA ASN ASN PRO SEQRES 9 B 214 GLN GLN GLN GLY LEU ARG ARG GLU TYR GLN GLN LEU TRP SEQRES 10 B 214 LEU THR ALA PHE ALA ALA LEU PRO GLY SER ALA LYS ASP SEQRES 11 B 214 PRO SER TRP ALA SER ILE LEU GLN GLY LEU GLU GLU PRO SEQRES 12 B 214 TYR HIS THR PHE VAL GLU ARG LEU ASN VAL ALA LEU ASP SEQRES 13 B 214 ASN GLY LEU PRO GLU GLY THR PRO LYS ASP PRO ILE LEU SEQRES 14 B 214 ARG SER LEU ALA TYR SER ASN ALA ASN LYS GLU CYS GLN SEQRES 15 B 214 LYS LEU LEU GLN ALA ARG GLY HIS THR ASN SER PRO LEU SEQRES 16 B 214 GLY ASP MET LEU ARG ALA CYS GLN ALA TRP THR PRO LYS SEQRES 17 B 214 ASP LYS THR LYS VAL LEU SEQRES 1 C 214 PRO VAL MET HIS PRO HIS GLY VAL PRO PRO SER HIS ARG SEQRES 2 C 214 PRO TRP GLN MET LYS ASP LEU GLN ALA ILE LYS GLN GLU SEQRES 3 C 214 VAL SER GLN ALA ALA PRO GLY SER PRO GLN PHE MET GLN SEQRES 4 C 214 THR ILE ARG LEU ALA VAL GLN GLN PHE ASP PRO THR ALA SEQRES 5 C 214 LYS ASP LEU GLN ASP LEU LEU GLN TYR LEU CYS SER SER SEQRES 6 C 214 LEU VAL ALA SER LEU HIS HIS GLN GLN LEU ASP SER LEU SEQRES 7 C 214 ILE SER GLU ALA GLU THR ARG GLY ILE THR GLY TYR ASN SEQRES 8 C 214 PRO LEU ALA GLY PRO LEU ARG VAL GLN ALA ASN ASN PRO SEQRES 9 C 214 GLN GLN GLN GLY LEU ARG ARG GLU TYR GLN GLN LEU TRP SEQRES 10 C 214 LEU THR ALA PHE ALA ALA LEU PRO GLY SER ALA LYS ASP SEQRES 11 C 214 PRO SER TRP ALA SER ILE LEU GLN GLY LEU GLU GLU PRO SEQRES 12 C 214 TYR HIS THR PHE VAL GLU ARG LEU ASN VAL ALA LEU ASP SEQRES 13 C 214 ASN GLY LEU PRO GLU GLY THR PRO LYS ASP PRO ILE LEU SEQRES 14 C 214 ARG SER LEU ALA TYR SER ASN ALA ASN LYS GLU CYS GLN SEQRES 15 C 214 LYS LEU LEU GLN ALA ARG GLY HIS THR ASN SER PRO LEU SEQRES 16 C 214 GLY ASP MET LEU ARG ALA CYS GLN ALA TRP THR PRO LYS SEQRES 17 C 214 ASP LYS THR LYS VAL LEU FORMUL 4 HOH *97(H2 O) HELIX 1 AA1 GLN A 16 SER A 28 1 13 HELIX 2 AA2 SER A 34 ASP A 49 1 16 HELIX 3 AA3 THR A 51 CYS A 63 1 13 HELIX 4 AA4 SER A 64 GLY A 86 1 23 HELIX 5 AA5 PRO A 96 ASN A 102 1 7 HELIX 6 AA6 GLN A 106 ALA A 120 1 15 HELIX 7 AA7 PHE A 121 LEU A 124 5 4 HELIX 8 AA8 PRO A 131 SER A 135 5 5 HELIX 9 AA9 PRO A 143 LEU A 159 1 17 HELIX 10 AB1 LYS A 165 ASN A 176 1 12 HELIX 11 AB2 GLU A 180 LEU A 184 5 5 HELIX 12 AB3 PRO A 194 GLN A 203 1 10 HELIX 13 AB4 GLN B 16 SER B 28 1 13 HELIX 14 AB5 SER B 34 ASP B 49 1 16 HELIX 15 AB6 THR B 51 CYS B 63 1 13 HELIX 16 AB7 SER B 64 GLY B 86 1 23 HELIX 17 AB8 PRO B 96 ASN B 102 1 7 HELIX 18 AB9 GLN B 106 PHE B 121 1 16 HELIX 19 AC1 ALA B 122 LEU B 124 5 3 HELIX 20 AC2 PRO B 131 ILE B 136 1 6 HELIX 21 AC3 PRO B 143 LEU B 159 1 17 HELIX 22 AC4 LYS B 165 ASN B 176 1 12 HELIX 23 AC5 ASN B 178 LEU B 185 1 8 HELIX 24 AC6 ASP B 197 ALA B 201 5 5 HELIX 25 AC7 GLN C 16 SER C 28 1 13 HELIX 26 AC8 SER C 34 ASP C 49 1 16 HELIX 27 AC9 THR C 51 CYS C 63 1 13 HELIX 28 AD1 SER C 64 GLY C 86 1 23 HELIX 29 AD2 PRO C 96 ALA C 101 1 6 HELIX 30 AD3 GLN C 106 ALA C 120 1 15 HELIX 31 AD4 PHE C 121 LEU C 124 5 4 HELIX 32 AD5 PRO C 131 SER C 135 5 5 HELIX 33 AD6 TYR C 144 ASN C 157 1 14 HELIX 34 AD7 LYS C 165 TYR C 174 1 10 HELIX 35 AD8 SER C 175 ALA C 177 5 3 HELIX 36 AD9 ASN C 178 LYS C 183 1 6 HELIX 37 AE1 PRO C 194 ARG C 200 1 7 SHEET 1 AA1 2 VAL A 2 MET A 3 0 SHEET 2 AA1 2 SER A 11 HIS A 12 -1 O SER A 11 N MET A 3 SHEET 1 AA2 2 VAL B 2 MET B 3 0 SHEET 2 AA2 2 SER B 11 HIS B 12 -1 O SER B 11 N MET B 3 SHEET 1 AA3 2 VAL C 2 MET C 3 0 SHEET 2 AA3 2 SER C 11 HIS C 12 -1 O SER C 11 N MET C 3 CRYST1 74.079 128.663 297.340 90.00 90.00 90.00 F 2 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003363 0.00000