HEADER ANTIMICROBIAL PROTEIN 12-OCT-22 8ERU TITLE SOLUTION NMR STRUCTURE OF A COMPUTATIONALLY DESIGNED MASTOPARAN-LIKE TITLE 2 PEPTIDE, MASTOPARAN-R4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MASTOPARAN-R4 PEPTIDE; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: VESPULA LEWISII; SOURCE 4 ORGANISM_COMMON: KOREAN YELLOW-JACKET WASP; SOURCE 5 ORGANISM_TAXID: 7452 KEYWDS ANTIMICROBIAL PEPTIDE, AMPS, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.D.P.FREITAS,K.G.N.OSHIRO,M.L.R.MACEDO,M.H.CARDOSO,O.L.FRANCO, AUTHOR 2 L.M.LIAO REVDAT 1 18-OCT-23 8ERU 0 JRNL AUTH C.D.P.FREITAS,K.G.N.OSHIRO,M.L.R.MACEDO,M.H.CARDOSO, JRNL AUTH 2 O.L.FRANCO,L.M.LIAO JRNL TITL SOLUTION NMR STRUCTURE OF A COMPUTACIONALLY DESIGNED JRNL TITL 2 MASTOPARAN-LIKE PEPTIDE, MASTOPARAN-R4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ERU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269192. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.98 REMARK 210 IONIC STRENGTH : ACID REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM MASTOPARAN-R4 PEPTIDE, 75 REMARK 210 MG/L [U-98% 2H] SDS-D25, 0.05 % REMARK 210 [U-98% 2H] DSS-D6, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.5.2, ARIA REMARK 210 2.3.2, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31047 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF A COMPUTACIONALLY DESIGNED MASTOPARAN- REMARK 900 LIKE PEPTIDE, MASTOPARAN-R4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE MASTOPARAN-R4 PEPTIDE IS AN ANALOG DERIVED FROM THE MASTOPARAN- REMARK 999 L BY THE JOKER ALGORITHM. THE PRIMARY SEQUENCE OF THE PARENTAL REMARK 999 PEPTIDE WAS USED AS TEMPLATE FOR RATIONAL DESIGN, USING THE AMINO REMARK 999 ACID RESIDUES FOR MODIFICATION OF CHARGE AND HYDROPHOBICITY. DBREF 8ERU B 1 14 UNP P01514 MAST_VESLE 1 13 SEQADV 8ERU LYS B 5 UNP P01514 ALA 5 ENGINEERED MUTATION SEQADV 8ERU ARG B 9 UNP P01514 INSERTION SEQADV 8ERU ILE B 10 UNP P01514 LEU 9 ENGINEERED MUTATION SEQADV 8ERU LYS B 11 UNP P01514 ALA 10 ENGINEERED MUTATION SEQADV 8ERU NH2 B 15 UNP P01514 AMIDATION SEQRES 1 B 15 ILE ASN LEU LYS LYS LEU ALA ALA ARG ILE LYS LYS LYS SEQRES 2 B 15 ILE NH2 HET NH2 B 15 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 AA1 ASN B 2 ILE B 14 1 13 LINK C ILE B 14 N NH2 B 15 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1