data_8EU6 # _entry.id 8EU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8EU6 pdb_00008eu6 10.2210/pdb8eu6/pdb WWPDB D_1000269205 ? ? EMDB EMD-28605 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-09 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation 5 3 'Structure model' citation_author 6 3 'Structure model' pdbx_struct_assembly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 2 2 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_DOI' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation.year' 14 3 'Structure model' '_citation_author.identifier_ORCID' 15 3 'Structure model' '_citation_author.name' 16 3 'Structure model' '_pdbx_struct_assembly.details' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8EU6 _pdbx_database_status.recvd_initial_deposition_date 2022-10-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Acheta domesticus segmented densovirus high buoyancy fraction 1 (HB1) empty capsid structure' _pdbx_database_related.db_id EMD-28605 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 tijssenpc@gmail.com Peter Tijssen ? 'principal investigator/group leader' 0000-0001-8947-3215 3 rmckenna@ufl.edu Robert McKenna ? 'principal investigator/group leader' 0000-0003-2375-3550 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Penzes, J.J.' 1 0000-0002-0366-9004 'McKenna, R.' 2 ? 'Tijssen, P.' 3 0000-0001-8947-3215 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 3515 _citation.page_last 3515 _citation.title 'Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-38875-x _citation.pdbx_database_id_PubMed 37316488 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Penzes, J.J.' 1 0000-0002-0366-9004 primary 'Pham, H.T.' 2 ? primary 'Chipman, P.' 3 0000-0003-3652-4087 primary 'Smith, E.W.' 4 ? primary 'McKenna, R.' 5 ? primary 'Tijssen, P.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Capsid protein' _entity.formula_weight 36291.906 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EGYGKHITSMHVRNIFNQGNQVIRNIVKQQRYELLDFTGTEAGTTNLPKIIPYQCIWWRGLQNAANVNQTINNMIALNTI SYGVRFLKAKLCIEVYAVTRKRLIQTGATSYYTDDFEQGQNLFIGWADRKAESIPITTPADLDETKLTVANTTLFDANND NITKEEVPTREKWCHTWDLDVLNHNYLWEPNNLDSQWTLIPGAQAVQPTATPIGPTYQEIVIATKAIGANESALVTTIQD RRSYPRLMLSQPQIKDETDTMKFKYQIRISTELEMEHHIKPDIANPWLTRQTLPLPALSGDGTTRYVPCVPYETHVSQ ; _entity_poly.pdbx_seq_one_letter_code_can ;EGYGKHITSMHVRNIFNQGNQVIRNIVKQQRYELLDFTGTEAGTTNLPKIIPYQCIWWRGLQNAANVNQTINNMIALNTI SYGVRFLKAKLCIEVYAVTRKRLIQTGATSYYTDDFEQGQNLFIGWADRKAESIPITTPADLDETKLTVANTTLFDANND NITKEEVPTREKWCHTWDLDVLNHNYLWEPNNLDSQWTLIPGAQAVQPTATPIGPTYQEIVIATKAIGANESALVTTIQD RRSYPRLMLSQPQIKDETDTMKFKYQIRISTELEMEHHIKPDIANPWLTRQTLPLPALSGDGTTRYVPCVPYETHVSQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLY n 1 3 TYR n 1 4 GLY n 1 5 LYS n 1 6 HIS n 1 7 ILE n 1 8 THR n 1 9 SER n 1 10 MET n 1 11 HIS n 1 12 VAL n 1 13 ARG n 1 14 ASN n 1 15 ILE n 1 16 PHE n 1 17 ASN n 1 18 GLN n 1 19 GLY n 1 20 ASN n 1 21 GLN n 1 22 VAL n 1 23 ILE n 1 24 ARG n 1 25 ASN n 1 26 ILE n 1 27 VAL n 1 28 LYS n 1 29 GLN n 1 30 GLN n 1 31 ARG n 1 32 TYR n 1 33 GLU n 1 34 LEU n 1 35 LEU n 1 36 ASP n 1 37 PHE n 1 38 THR n 1 39 GLY n 1 40 THR n 1 41 GLU n 1 42 ALA n 1 43 GLY n 1 44 THR n 1 45 THR n 1 46 ASN n 1 47 LEU n 1 48 PRO n 1 49 LYS n 1 50 ILE n 1 51 ILE n 1 52 PRO n 1 53 TYR n 1 54 GLN n 1 55 CYS n 1 56 ILE n 1 57 TRP n 1 58 TRP n 1 59 ARG n 1 60 GLY n 1 61 LEU n 1 62 GLN n 1 63 ASN n 1 64 ALA n 1 65 ALA n 1 66 ASN n 1 67 VAL n 1 68 ASN n 1 69 GLN n 1 70 THR n 1 71 ILE n 1 72 ASN n 1 73 ASN n 1 74 MET n 1 75 ILE n 1 76 ALA n 1 77 LEU n 1 78 ASN n 1 79 THR n 1 80 ILE n 1 81 SER n 1 82 TYR n 1 83 GLY n 1 84 VAL n 1 85 ARG n 1 86 PHE n 1 87 LEU n 1 88 LYS n 1 89 ALA n 1 90 LYS n 1 91 LEU n 1 92 CYS n 1 93 ILE n 1 94 GLU n 1 95 VAL n 1 96 TYR n 1 97 ALA n 1 98 VAL n 1 99 THR n 1 100 ARG n 1 101 LYS n 1 102 ARG n 1 103 LEU n 1 104 ILE n 1 105 GLN n 1 106 THR n 1 107 GLY n 1 108 ALA n 1 109 THR n 1 110 SER n 1 111 TYR n 1 112 TYR n 1 113 THR n 1 114 ASP n 1 115 ASP n 1 116 PHE n 1 117 GLU n 1 118 GLN n 1 119 GLY n 1 120 GLN n 1 121 ASN n 1 122 LEU n 1 123 PHE n 1 124 ILE n 1 125 GLY n 1 126 TRP n 1 127 ALA n 1 128 ASP n 1 129 ARG n 1 130 LYS n 1 131 ALA n 1 132 GLU n 1 133 SER n 1 134 ILE n 1 135 PRO n 1 136 ILE n 1 137 THR n 1 138 THR n 1 139 PRO n 1 140 ALA n 1 141 ASP n 1 142 LEU n 1 143 ASP n 1 144 GLU n 1 145 THR n 1 146 LYS n 1 147 LEU n 1 148 THR n 1 149 VAL n 1 150 ALA n 1 151 ASN n 1 152 THR n 1 153 THR n 1 154 LEU n 1 155 PHE n 1 156 ASP n 1 157 ALA n 1 158 ASN n 1 159 ASN n 1 160 ASP n 1 161 ASN n 1 162 ILE n 1 163 THR n 1 164 LYS n 1 165 GLU n 1 166 GLU n 1 167 VAL n 1 168 PRO n 1 169 THR n 1 170 ARG n 1 171 GLU n 1 172 LYS n 1 173 TRP n 1 174 CYS n 1 175 HIS n 1 176 THR n 1 177 TRP n 1 178 ASP n 1 179 LEU n 1 180 ASP n 1 181 VAL n 1 182 LEU n 1 183 ASN n 1 184 HIS n 1 185 ASN n 1 186 TYR n 1 187 LEU n 1 188 TRP n 1 189 GLU n 1 190 PRO n 1 191 ASN n 1 192 ASN n 1 193 LEU n 1 194 ASP n 1 195 SER n 1 196 GLN n 1 197 TRP n 1 198 THR n 1 199 LEU n 1 200 ILE n 1 201 PRO n 1 202 GLY n 1 203 ALA n 1 204 GLN n 1 205 ALA n 1 206 VAL n 1 207 GLN n 1 208 PRO n 1 209 THR n 1 210 ALA n 1 211 THR n 1 212 PRO n 1 213 ILE n 1 214 GLY n 1 215 PRO n 1 216 THR n 1 217 TYR n 1 218 GLN n 1 219 GLU n 1 220 ILE n 1 221 VAL n 1 222 ILE n 1 223 ALA n 1 224 THR n 1 225 LYS n 1 226 ALA n 1 227 ILE n 1 228 GLY n 1 229 ALA n 1 230 ASN n 1 231 GLU n 1 232 SER n 1 233 ALA n 1 234 LEU n 1 235 VAL n 1 236 THR n 1 237 THR n 1 238 ILE n 1 239 GLN n 1 240 ASP n 1 241 ARG n 1 242 ARG n 1 243 SER n 1 244 TYR n 1 245 PRO n 1 246 ARG n 1 247 LEU n 1 248 MET n 1 249 LEU n 1 250 SER n 1 251 GLN n 1 252 PRO n 1 253 GLN n 1 254 ILE n 1 255 LYS n 1 256 ASP n 1 257 GLU n 1 258 THR n 1 259 ASP n 1 260 THR n 1 261 MET n 1 262 LYS n 1 263 PHE n 1 264 LYS n 1 265 TYR n 1 266 GLN n 1 267 ILE n 1 268 ARG n 1 269 ILE n 1 270 SER n 1 271 THR n 1 272 GLU n 1 273 LEU n 1 274 GLU n 1 275 MET n 1 276 GLU n 1 277 HIS n 1 278 HIS n 1 279 ILE n 1 280 LYS n 1 281 PRO n 1 282 ASP n 1 283 ILE n 1 284 ALA n 1 285 ASN n 1 286 PRO n 1 287 TRP n 1 288 LEU n 1 289 THR n 1 290 ARG n 1 291 GLN n 1 292 THR n 1 293 LEU n 1 294 PRO n 1 295 LEU n 1 296 PRO n 1 297 ALA n 1 298 LEU n 1 299 SER n 1 300 GLY n 1 301 ASP n 1 302 GLY n 1 303 THR n 1 304 THR n 1 305 ARG n 1 306 TYR n 1 307 VAL n 1 308 PRO n 1 309 CYS n 1 310 VAL n 1 311 PRO n 1 312 TYR n 1 313 GLU n 1 314 THR n 1 315 HIS n 1 316 VAL n 1 317 SER n 1 318 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 318 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Solenopsis invicta-associated densovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2810814 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'house cricket' _entity_src_gen.pdbx_host_org_scientific_name 'Acheta domesticus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 6997 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 49 49 GLU GLU A . n A 1 2 GLY 2 50 50 GLY GLY A . n A 1 3 TYR 3 51 51 TYR TYR A . n A 1 4 GLY 4 52 52 GLY GLY A . n A 1 5 LYS 5 53 53 LYS LYS A . n A 1 6 HIS 6 54 54 HIS HIS A . n A 1 7 ILE 7 55 55 ILE ILE A . n A 1 8 THR 8 56 56 THR THR A . n A 1 9 SER 9 57 57 SER SER A . n A 1 10 MET 10 58 58 MET MET A . n A 1 11 HIS 11 59 59 HIS HIS A . n A 1 12 VAL 12 60 60 VAL VAL A . n A 1 13 ARG 13 61 61 ARG ARG A . n A 1 14 ASN 14 62 62 ASN ASN A . n A 1 15 ILE 15 63 63 ILE ILE A . n A 1 16 PHE 16 64 64 PHE PHE A . n A 1 17 ASN 17 65 65 ASN ASN A . n A 1 18 GLN 18 66 66 GLN GLN A . n A 1 19 GLY 19 67 67 GLY GLY A . n A 1 20 ASN 20 68 68 ASN ASN A . n A 1 21 GLN 21 69 69 GLN GLN A . n A 1 22 VAL 22 70 70 VAL VAL A . n A 1 23 ILE 23 71 71 ILE ILE A . n A 1 24 ARG 24 72 72 ARG ARG A . n A 1 25 ASN 25 73 73 ASN ASN A . n A 1 26 ILE 26 74 74 ILE ILE A . n A 1 27 VAL 27 75 75 VAL VAL A . n A 1 28 LYS 28 76 76 LYS LYS A . n A 1 29 GLN 29 77 77 GLN GLN A . n A 1 30 GLN 30 78 78 GLN GLN A . n A 1 31 ARG 31 79 79 ARG ARG A . n A 1 32 TYR 32 80 80 TYR TYR A . n A 1 33 GLU 33 81 81 GLU GLU A . n A 1 34 LEU 34 82 82 LEU LEU A . n A 1 35 LEU 35 83 83 LEU LEU A . n A 1 36 ASP 36 84 84 ASP ASP A . n A 1 37 PHE 37 85 85 PHE PHE A . n A 1 38 THR 38 86 86 THR THR A . n A 1 39 GLY 39 87 87 GLY GLY A . n A 1 40 THR 40 88 88 THR THR A . n A 1 41 GLU 41 89 89 GLU GLU A . n A 1 42 ALA 42 90 90 ALA ALA A . n A 1 43 GLY 43 91 91 GLY GLY A . n A 1 44 THR 44 92 92 THR THR A . n A 1 45 THR 45 93 93 THR THR A . n A 1 46 ASN 46 94 94 ASN ASN A . n A 1 47 LEU 47 95 95 LEU LEU A . n A 1 48 PRO 48 96 96 PRO PRO A . n A 1 49 LYS 49 97 97 LYS LYS A . n A 1 50 ILE 50 98 98 ILE ILE A . n A 1 51 ILE 51 99 99 ILE ILE A . n A 1 52 PRO 52 100 100 PRO PRO A . n A 1 53 TYR 53 101 101 TYR TYR A . n A 1 54 GLN 54 102 102 GLN GLN A . n A 1 55 CYS 55 103 103 CYS CYS A . n A 1 56 ILE 56 104 104 ILE ILE A . n A 1 57 TRP 57 105 105 TRP TRP A . n A 1 58 TRP 58 106 106 TRP TRP A . n A 1 59 ARG 59 107 107 ARG ARG A . n A 1 60 GLY 60 108 108 GLY GLY A . n A 1 61 LEU 61 109 109 LEU LEU A . n A 1 62 GLN 62 110 110 GLN GLN A . n A 1 63 ASN 63 111 111 ASN ASN A . n A 1 64 ALA 64 112 112 ALA ALA A . n A 1 65 ALA 65 113 113 ALA ALA A . n A 1 66 ASN 66 114 114 ASN ASN A . n A 1 67 VAL 67 115 115 VAL VAL A . n A 1 68 ASN 68 116 116 ASN ASN A . n A 1 69 GLN 69 117 117 GLN GLN A . n A 1 70 THR 70 118 118 THR THR A . n A 1 71 ILE 71 119 119 ILE ILE A . n A 1 72 ASN 72 120 120 ASN ASN A . n A 1 73 ASN 73 121 121 ASN ASN A . n A 1 74 MET 74 122 122 MET MET A . n A 1 75 ILE 75 123 123 ILE ILE A . n A 1 76 ALA 76 124 124 ALA ALA A . n A 1 77 LEU 77 125 125 LEU LEU A . n A 1 78 ASN 78 126 126 ASN ASN A . n A 1 79 THR 79 127 127 THR THR A . n A 1 80 ILE 80 128 128 ILE ILE A . n A 1 81 SER 81 129 129 SER SER A . n A 1 82 TYR 82 130 130 TYR TYR A . n A 1 83 GLY 83 131 131 GLY GLY A . n A 1 84 VAL 84 132 132 VAL VAL A . n A 1 85 ARG 85 133 133 ARG ARG A . n A 1 86 PHE 86 134 134 PHE PHE A . n A 1 87 LEU 87 135 135 LEU LEU A . n A 1 88 LYS 88 136 136 LYS LYS A . n A 1 89 ALA 89 137 137 ALA ALA A . n A 1 90 LYS 90 138 138 LYS LYS A . n A 1 91 LEU 91 139 139 LEU LEU A . n A 1 92 CYS 92 140 140 CYS CYS A . n A 1 93 ILE 93 141 141 ILE ILE A . n A 1 94 GLU 94 142 142 GLU GLU A . n A 1 95 VAL 95 143 143 VAL VAL A . n A 1 96 TYR 96 144 144 TYR TYR A . n A 1 97 ALA 97 145 145 ALA ALA A . n A 1 98 VAL 98 146 146 VAL VAL A . n A 1 99 THR 99 147 147 THR THR A . n A 1 100 ARG 100 148 148 ARG ARG A . n A 1 101 LYS 101 149 149 LYS LYS A . n A 1 102 ARG 102 150 150 ARG ARG A . n A 1 103 LEU 103 151 151 LEU LEU A . n A 1 104 ILE 104 152 152 ILE ILE A . n A 1 105 GLN 105 153 153 GLN GLN A . n A 1 106 THR 106 154 154 THR THR A . n A 1 107 GLY 107 155 155 GLY GLY A . n A 1 108 ALA 108 156 156 ALA ALA A . n A 1 109 THR 109 157 157 THR THR A . n A 1 110 SER 110 158 158 SER SER A . n A 1 111 TYR 111 159 159 TYR TYR A . n A 1 112 TYR 112 160 160 TYR TYR A . n A 1 113 THR 113 161 161 THR THR A . n A 1 114 ASP 114 162 162 ASP ASP A . n A 1 115 ASP 115 163 163 ASP ASP A . n A 1 116 PHE 116 164 164 PHE PHE A . n A 1 117 GLU 117 165 165 GLU GLU A . n A 1 118 GLN 118 166 166 GLN GLN A . n A 1 119 GLY 119 167 167 GLY GLY A . n A 1 120 GLN 120 168 168 GLN GLN A . n A 1 121 ASN 121 169 169 ASN ASN A . n A 1 122 LEU 122 170 170 LEU LEU A . n A 1 123 PHE 123 171 171 PHE PHE A . n A 1 124 ILE 124 172 172 ILE ILE A . n A 1 125 GLY 125 173 173 GLY GLY A . n A 1 126 TRP 126 174 174 TRP TRP A . n A 1 127 ALA 127 175 175 ALA ALA A . n A 1 128 ASP 128 176 176 ASP ASP A . n A 1 129 ARG 129 177 177 ARG ARG A . n A 1 130 LYS 130 178 178 LYS LYS A . n A 1 131 ALA 131 179 179 ALA ALA A . n A 1 132 GLU 132 180 180 GLU GLU A . n A 1 133 SER 133 181 181 SER SER A . n A 1 134 ILE 134 182 182 ILE ILE A . n A 1 135 PRO 135 183 183 PRO PRO A . n A 1 136 ILE 136 184 184 ILE ILE A . n A 1 137 THR 137 185 185 THR THR A . n A 1 138 THR 138 186 186 THR THR A . n A 1 139 PRO 139 187 187 PRO PRO A . n A 1 140 ALA 140 188 188 ALA ALA A . n A 1 141 ASP 141 189 189 ASP ASP A . n A 1 142 LEU 142 190 190 LEU LEU A . n A 1 143 ASP 143 191 191 ASP ASP A . n A 1 144 GLU 144 192 192 GLU GLU A . n A 1 145 THR 145 193 193 THR THR A . n A 1 146 LYS 146 194 194 LYS LYS A . n A 1 147 LEU 147 195 195 LEU LEU A . n A 1 148 THR 148 196 196 THR THR A . n A 1 149 VAL 149 197 197 VAL VAL A . n A 1 150 ALA 150 198 198 ALA ALA A . n A 1 151 ASN 151 199 199 ASN ASN A . n A 1 152 THR 152 200 200 THR THR A . n A 1 153 THR 153 201 201 THR THR A . n A 1 154 LEU 154 202 202 LEU LEU A . n A 1 155 PHE 155 203 203 PHE PHE A . n A 1 156 ASP 156 204 204 ASP ASP A . n A 1 157 ALA 157 205 205 ALA ALA A . n A 1 158 ASN 158 206 206 ASN ASN A . n A 1 159 ASN 159 207 207 ASN ASN A . n A 1 160 ASP 160 208 208 ASP ASP A . n A 1 161 ASN 161 209 209 ASN ASN A . n A 1 162 ILE 162 210 210 ILE ILE A . n A 1 163 THR 163 211 211 THR THR A . n A 1 164 LYS 164 212 212 LYS LYS A . n A 1 165 GLU 165 213 213 GLU GLU A . n A 1 166 GLU 166 214 214 GLU GLU A . n A 1 167 VAL 167 215 215 VAL VAL A . n A 1 168 PRO 168 216 216 PRO PRO A . n A 1 169 THR 169 217 217 THR THR A . n A 1 170 ARG 170 218 218 ARG ARG A . n A 1 171 GLU 171 219 219 GLU GLU A . n A 1 172 LYS 172 220 220 LYS LYS A . n A 1 173 TRP 173 221 221 TRP TRP A . n A 1 174 CYS 174 222 222 CYS CYS A . n A 1 175 HIS 175 223 223 HIS HIS A . n A 1 176 THR 176 224 224 THR THR A . n A 1 177 TRP 177 225 225 TRP TRP A . n A 1 178 ASP 178 226 226 ASP ASP A . n A 1 179 LEU 179 227 227 LEU LEU A . n A 1 180 ASP 180 228 228 ASP ASP A . n A 1 181 VAL 181 229 229 VAL VAL A . n A 1 182 LEU 182 230 230 LEU LEU A . n A 1 183 ASN 183 231 231 ASN ASN A . n A 1 184 HIS 184 232 232 HIS HIS A . n A 1 185 ASN 185 233 233 ASN ASN A . n A 1 186 TYR 186 234 234 TYR TYR A . n A 1 187 LEU 187 235 235 LEU LEU A . n A 1 188 TRP 188 236 236 TRP TRP A . n A 1 189 GLU 189 237 237 GLU GLU A . n A 1 190 PRO 190 238 238 PRO PRO A . n A 1 191 ASN 191 239 239 ASN ASN A . n A 1 192 ASN 192 240 240 ASN ASN A . n A 1 193 LEU 193 241 241 LEU LEU A . n A 1 194 ASP 194 242 242 ASP ASP A . n A 1 195 SER 195 243 243 SER SER A . n A 1 196 GLN 196 244 244 GLN GLN A . n A 1 197 TRP 197 245 245 TRP TRP A . n A 1 198 THR 198 246 246 THR THR A . n A 1 199 LEU 199 247 247 LEU LEU A . n A 1 200 ILE 200 248 248 ILE ILE A . n A 1 201 PRO 201 249 249 PRO PRO A . n A 1 202 GLY 202 250 250 GLY GLY A . n A 1 203 ALA 203 251 251 ALA ALA A . n A 1 204 GLN 204 252 252 GLN GLN A . n A 1 205 ALA 205 253 253 ALA ALA A . n A 1 206 VAL 206 254 254 VAL VAL A . n A 1 207 GLN 207 255 255 GLN GLN A . n A 1 208 PRO 208 256 256 PRO PRO A . n A 1 209 THR 209 257 257 THR THR A . n A 1 210 ALA 210 258 258 ALA ALA A . n A 1 211 THR 211 259 259 THR THR A . n A 1 212 PRO 212 260 260 PRO PRO A . n A 1 213 ILE 213 261 261 ILE ILE A . n A 1 214 GLY 214 262 262 GLY GLY A . n A 1 215 PRO 215 263 263 PRO PRO A . n A 1 216 THR 216 264 264 THR THR A . n A 1 217 TYR 217 265 265 TYR TYR A . n A 1 218 GLN 218 266 266 GLN GLN A . n A 1 219 GLU 219 267 267 GLU GLU A . n A 1 220 ILE 220 268 268 ILE ILE A . n A 1 221 VAL 221 269 269 VAL VAL A . n A 1 222 ILE 222 270 270 ILE ILE A . n A 1 223 ALA 223 271 271 ALA ALA A . n A 1 224 THR 224 272 272 THR THR A . n A 1 225 LYS 225 273 273 LYS LYS A . n A 1 226 ALA 226 274 274 ALA ALA A . n A 1 227 ILE 227 275 275 ILE ILE A . n A 1 228 GLY 228 276 276 GLY GLY A . n A 1 229 ALA 229 277 277 ALA ALA A . n A 1 230 ASN 230 278 278 ASN ASN A . n A 1 231 GLU 231 279 279 GLU GLU A . n A 1 232 SER 232 280 280 SER SER A . n A 1 233 ALA 233 281 281 ALA ALA A . n A 1 234 LEU 234 282 282 LEU LEU A . n A 1 235 VAL 235 283 283 VAL VAL A . n A 1 236 THR 236 284 284 THR THR A . n A 1 237 THR 237 285 285 THR THR A . n A 1 238 ILE 238 286 286 ILE ILE A . n A 1 239 GLN 239 287 287 GLN GLN A . n A 1 240 ASP 240 288 288 ASP ASP A . n A 1 241 ARG 241 289 289 ARG ARG A . n A 1 242 ARG 242 290 290 ARG ARG A . n A 1 243 SER 243 291 291 SER SER A . n A 1 244 TYR 244 292 292 TYR TYR A . n A 1 245 PRO 245 293 293 PRO PRO A . n A 1 246 ARG 246 294 294 ARG ARG A . n A 1 247 LEU 247 295 295 LEU LEU A . n A 1 248 MET 248 296 296 MET MET A . n A 1 249 LEU 249 297 297 LEU LEU A . n A 1 250 SER 250 298 298 SER SER A . n A 1 251 GLN 251 299 299 GLN GLN A . n A 1 252 PRO 252 300 300 PRO PRO A . n A 1 253 GLN 253 301 301 GLN GLN A . n A 1 254 ILE 254 302 302 ILE ILE A . n A 1 255 LYS 255 303 303 LYS LYS A . n A 1 256 ASP 256 304 304 ASP ASP A . n A 1 257 GLU 257 305 305 GLU GLU A . n A 1 258 THR 258 306 306 THR THR A . n A 1 259 ASP 259 307 307 ASP ASP A . n A 1 260 THR 260 308 308 THR THR A . n A 1 261 MET 261 309 309 MET MET A . n A 1 262 LYS 262 310 310 LYS LYS A . n A 1 263 PHE 263 311 311 PHE PHE A . n A 1 264 LYS 264 312 312 LYS LYS A . n A 1 265 TYR 265 313 313 TYR TYR A . n A 1 266 GLN 266 314 314 GLN GLN A . n A 1 267 ILE 267 315 315 ILE ILE A . n A 1 268 ARG 268 316 316 ARG ARG A . n A 1 269 ILE 269 317 317 ILE ILE A . n A 1 270 SER 270 318 318 SER SER A . n A 1 271 THR 271 319 319 THR THR A . n A 1 272 GLU 272 320 320 GLU GLU A . n A 1 273 LEU 273 321 321 LEU LEU A . n A 1 274 GLU 274 322 322 GLU GLU A . n A 1 275 MET 275 323 323 MET MET A . n A 1 276 GLU 276 324 324 GLU ALA A . n A 1 277 HIS 277 325 325 HIS HIS A . n A 1 278 HIS 278 326 326 HIS HIS A . n A 1 279 ILE 279 327 327 ILE ILE A . n A 1 280 LYS 280 328 328 LYS LYS A . n A 1 281 PRO 281 329 329 PRO PRO A . n A 1 282 ASP 282 330 330 ASP ASP A . n A 1 283 ILE 283 331 331 ILE ILE A . n A 1 284 ALA 284 332 332 ALA ALA A . n A 1 285 ASN 285 333 333 ASN ASN A . n A 1 286 PRO 286 334 334 PRO PRO A . n A 1 287 TRP 287 335 335 TRP TRP A . n A 1 288 LEU 288 336 336 LEU LEU A . n A 1 289 THR 289 337 337 THR THR A . n A 1 290 ARG 290 338 338 ARG ARG A . n A 1 291 GLN 291 339 339 GLN GLN A . n A 1 292 THR 292 340 340 THR THR A . n A 1 293 LEU 293 341 341 LEU LEU A . n A 1 294 PRO 294 342 342 PRO PRO A . n A 1 295 LEU 295 343 343 LEU LEU A . n A 1 296 PRO 296 344 344 PRO PRO A . n A 1 297 ALA 297 345 345 ALA ALA A . n A 1 298 LEU 298 346 346 LEU LEU A . n A 1 299 SER 299 347 347 SER SER A . n A 1 300 GLY 300 348 348 GLY GLY A . n A 1 301 ASP 301 349 349 ASP ASP A . n A 1 302 GLY 302 350 350 GLY GLY A . n A 1 303 THR 303 351 351 THR THR A . n A 1 304 THR 304 352 352 THR THR A . n A 1 305 ARG 305 353 353 ARG ARG A . n A 1 306 TYR 306 354 354 TYR TYR A . n A 1 307 VAL 307 355 355 VAL VAL A . n A 1 308 PRO 308 356 356 PRO PRO A . n A 1 309 CYS 309 357 357 CYS CYS A . n A 1 310 VAL 310 358 358 VAL VAL A . n A 1 311 PRO 311 359 359 PRO PRO A . n A 1 312 TYR 312 360 360 TYR TYR A . n A 1 313 GLU 313 361 361 GLU GLU A . n A 1 314 THR 314 362 362 THR THR A . n A 1 315 HIS 315 363 363 HIS HIS A . n A 1 316 VAL 316 364 364 VAL VAL A . n A 1 317 SER 317 365 365 SER SER A . n A 1 318 GLN 318 366 366 GLN GLN A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 324 ? CG ? A GLU 276 CG 2 1 Y 1 A GLU 324 ? CD ? A GLU 276 CD 3 1 Y 1 A GLU 324 ? OE1 ? A GLU 276 OE1 4 1 Y 1 A GLU 324 ? OE2 ? A GLU 276 OE2 # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.10-2155_2155: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8EU6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8EU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8EU6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8EU6 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 ? 307498 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.670 ? 555778 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.661 ? 159118 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.052 ? 24360 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 48000 ? f_plane_restr ? ? # _struct.entry_id 8EU6 _struct.title 'Acheta domesticus segmented densovirus high buoyancy fraction 1 (HB1) empty capsid structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8EU6 _struct_keywords.text 'parvovirus, densovirus, virus capsid, virion, insect virus, capsid, invertebrate, virus, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A891H5C3_9VIRU _struct_ref.pdbx_db_accession A0A891H5C3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGYGKHITSMHVRNIFNQGNQVIRNIVKQQRYELLDFTGTEAGTTNLPKIIPYQCIGWWRGLQNAANVNQTINNMIALNT ISYGVRFLKAKLCIEVYAVTRKRLIQTGATSYYTDDFEQGQNLFIGWADRKAESIPITTPADLDETKLTVANTTLFDANN DNITKEEVPTREKWCHTWDFDVLNHNYLWEPNNLDSQWTLIPGAQAVQPTATPIGPTYQEIVIATKAIGANESALVTTIQ DRRSYPRLMLSQPQIKDETDTMKFKYQIRISTELEMEHHIKPDIANPWLTRQTLPLPALSGDGTTRYVP ; _struct_ref.pdbx_align_begin 49 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8EU6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 308 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A891H5C3 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 357 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 356 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8EU6 ? A ? ? UNP A0A891H5C3 GLY 105 deletion ? 1 1 8EU6 LEU A 179 ? UNP A0A891H5C3 PHE 228 conflict 227 2 1 8EU6 CYS A 309 ? UNP A0A891H5C3 ? ? 'expression tag' 357 3 1 8EU6 VAL A 310 ? UNP A0A891H5C3 ? ? 'expression tag' 358 4 1 8EU6 PRO A 311 ? UNP A0A891H5C3 ? ? 'expression tag' 359 5 1 8EU6 TYR A 312 ? UNP A0A891H5C3 ? ? 'expression tag' 360 6 1 8EU6 GLU A 313 ? UNP A0A891H5C3 ? ? 'expression tag' 361 7 1 8EU6 THR A 314 ? UNP A0A891H5C3 ? ? 'expression tag' 362 8 1 8EU6 HIS A 315 ? UNP A0A891H5C3 ? ? 'expression tag' 363 9 1 8EU6 VAL A 316 ? UNP A0A891H5C3 ? ? 'expression tag' 364 10 1 8EU6 SER A 317 ? UNP A0A891H5C3 ? ? 'expression tag' 365 11 1 8EU6 GLN A 318 ? UNP A0A891H5C3 ? ? 'expression tag' 366 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.15_b42258.' _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? -0.809017 -0.500000 0.309017 0.00000 -0.500000 0.309017 -0.809017 0.00000 0.309017 -0.809017 -0.500000 0.00000 3 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 0.00000 -1.000000 0.000000 0.000000 0.00000 4 'point symmetry operation' ? ? 0.809017 -0.500000 -0.309017 0.00000 -0.500000 -0.309017 -0.809017 0.00000 0.309017 0.809017 -0.500000 0.00000 5 'point symmetry operation' ? ? 0.500000 0.309017 -0.809017 0.00000 -0.309017 -0.809017 -0.500000 0.00000 -0.809017 0.500000 -0.309017 0.00000 6 'point symmetry operation' ? ? -0.309017 -0.809017 -0.500000 0.00000 -0.809017 0.500000 -0.309017 0.00000 0.500000 0.309017 -0.809017 0.00000 7 'point symmetry operation' ? ? -0.809017 0.500000 -0.309017 0.00000 0.500000 0.309017 -0.809017 0.00000 -0.309017 -0.809017 -0.500000 0.00000 8 'point symmetry operation' ? ? -0.809017 -0.500000 -0.309017 0.00000 0.500000 -0.309017 -0.809017 0.00000 0.309017 -0.809017 0.500000 0.00000 9 'point symmetry operation' ? ? -0.309017 0.809017 -0.500000 0.00000 -0.809017 -0.500000 -0.309017 0.00000 -0.500000 0.309017 0.809017 0.00000 10 'point symmetry operation' ? ? 0.500000 -0.309017 -0.809017 0.00000 -0.309017 0.809017 -0.500000 0.00000 0.809017 0.500000 0.309017 0.00000 11 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 0.00000 -1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 12 'point symmetry operation' ? ? -0.500000 -0.309017 -0.809017 0.00000 0.309017 0.809017 -0.500000 0.00000 0.809017 -0.500000 -0.309017 0.00000 13 'point symmetry operation' ? ? -0.500000 0.309017 -0.809017 0.00000 0.309017 -0.809017 -0.500000 0.00000 -0.809017 -0.500000 0.309017 0.00000 14 'point symmetry operation' ? ? -0.309017 -0.809017 -0.500000 0.00000 0.809017 -0.500000 0.309017 0.00000 -0.500000 -0.309017 0.809017 0.00000 15 'point symmetry operation' ? ? -0.809017 0.500000 -0.309017 0.00000 -0.500000 -0.309017 0.809017 0.00000 0.309017 0.809017 0.500000 0.00000 16 'point symmetry operation' ? ? 0.500000 0.309017 -0.809017 0.00000 0.309017 0.809017 0.500000 0.00000 0.809017 -0.500000 0.309017 0.00000 17 'point symmetry operation' ? ? -0.500000 0.309017 -0.809017 0.00000 -0.309017 0.809017 0.500000 0.00000 0.809017 0.500000 -0.309017 0.00000 18 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 0.00000 19 'point symmetry operation' ? ? -0.500000 -0.309017 -0.809017 0.00000 -0.309017 -0.809017 0.500000 0.00000 -0.809017 0.500000 0.309017 0.00000 20 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 0.00000 21 'point symmetry operation' ? ? -0.809017 0.500000 0.309017 0.00000 0.500000 0.309017 0.809017 0.00000 0.309017 0.809017 -0.500000 0.00000 22 'point symmetry operation' ? ? 0.809017 0.500000 -0.309017 0.00000 0.500000 -0.309017 0.809017 0.00000 0.309017 -0.809017 -0.500000 0.00000 23 'point symmetry operation' ? ? -0.309017 0.809017 -0.500000 0.00000 0.809017 0.500000 0.309017 0.00000 0.500000 -0.309017 -0.809017 0.00000 24 'point symmetry operation' ? ? 0.500000 -0.309017 -0.809017 0.00000 0.309017 -0.809017 0.500000 0.00000 -0.809017 -0.500000 -0.309017 0.00000 25 'point symmetry operation' ? ? -0.809017 -0.500000 -0.309017 0.00000 -0.500000 0.309017 0.809017 0.00000 -0.309017 0.809017 -0.500000 0.00000 26 'point symmetry operation' ? ? -0.309017 -0.809017 0.500000 0.00000 -0.809017 0.500000 0.309017 0.00000 -0.500000 -0.309017 -0.809017 0.00000 27 'point symmetry operation' ? ? -0.309017 0.809017 0.500000 0.00000 0.809017 0.500000 -0.309017 0.00000 -0.500000 0.309017 -0.809017 0.00000 28 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 0.00000 29 'point symmetry operation' ? ? 0.309017 0.809017 -0.500000 0.00000 0.809017 -0.500000 -0.309017 0.00000 -0.500000 -0.309017 -0.809017 0.00000 30 'point symmetry operation' ? ? 0.309017 -0.809017 -0.500000 0.00000 -0.809017 -0.500000 0.309017 0.00000 -0.500000 0.309017 -0.809017 0.00000 31 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 0.00000 32 'point symmetry operation' ? ? 0.809017 0.500000 -0.309017 0.00000 -0.500000 0.309017 -0.809017 0.00000 -0.309017 0.809017 0.500000 0.00000 33 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 34 'point symmetry operation' ? ? -0.809017 0.500000 0.309017 0.00000 -0.500000 -0.309017 -0.809017 0.00000 -0.309017 -0.809017 0.500000 0.00000 35 'point symmetry operation' ? ? -0.500000 -0.309017 0.809017 0.00000 -0.309017 -0.809017 -0.500000 0.00000 0.809017 -0.500000 0.309017 0.00000 36 'point symmetry operation' ? ? 0.309017 0.809017 0.500000 0.00000 -0.809017 0.500000 -0.309017 0.00000 -0.500000 -0.309017 0.809017 0.00000 37 'point symmetry operation' ? ? 0.809017 -0.500000 0.309017 0.00000 0.500000 0.309017 -0.809017 0.00000 0.309017 0.809017 0.500000 0.00000 38 'point symmetry operation' ? ? 0.809017 0.500000 0.309017 0.00000 0.500000 -0.309017 -0.809017 0.00000 -0.309017 0.809017 -0.500000 0.00000 39 'point symmetry operation' ? ? 0.309017 -0.809017 0.500000 0.00000 -0.809017 -0.500000 -0.309017 0.00000 0.500000 -0.309017 -0.809017 0.00000 40 'point symmetry operation' ? ? -0.500000 0.309017 0.809017 0.00000 -0.309017 0.809017 -0.500000 0.00000 -0.809017 -0.500000 -0.309017 0.00000 41 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 0.00000 42 'point symmetry operation' ? ? 0.500000 0.309017 0.809017 0.00000 0.309017 0.809017 -0.500000 0.00000 -0.809017 0.500000 0.309017 0.00000 43 'point symmetry operation' ? ? 0.500000 -0.309017 0.809017 0.00000 0.309017 -0.809017 -0.500000 0.00000 0.809017 0.500000 -0.309017 0.00000 44 'point symmetry operation' ? ? 0.309017 0.809017 0.500000 0.00000 0.809017 -0.500000 0.309017 0.00000 0.500000 0.309017 -0.809017 0.00000 45 'point symmetry operation' ? ? 0.809017 -0.500000 0.309017 0.00000 -0.500000 -0.309017 0.809017 0.00000 -0.309017 -0.809017 -0.500000 0.00000 46 'point symmetry operation' ? ? -0.500000 -0.309017 0.809017 0.00000 0.309017 0.809017 0.500000 0.00000 -0.809017 0.500000 -0.309017 0.00000 47 'point symmetry operation' ? ? 0.500000 -0.309017 0.809017 0.00000 -0.309017 0.809017 0.500000 0.00000 -0.809017 -0.500000 0.309017 0.00000 48 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 49 'point symmetry operation' ? ? 0.500000 0.309017 0.809017 0.00000 -0.309017 -0.809017 0.500000 0.00000 0.809017 -0.500000 -0.309017 0.00000 50 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 51 'point symmetry operation' ? ? 0.809017 -0.500000 -0.309017 0.00000 0.500000 0.309017 0.809017 0.00000 -0.309017 -0.809017 0.500000 0.00000 52 'point symmetry operation' ? ? -0.809017 -0.500000 0.309017 0.00000 0.500000 -0.309017 0.809017 0.00000 -0.309017 0.809017 0.500000 0.00000 53 'point symmetry operation' ? ? 0.309017 -0.809017 0.500000 0.00000 0.809017 0.500000 0.309017 0.00000 -0.500000 0.309017 0.809017 0.00000 54 'point symmetry operation' ? ? -0.500000 0.309017 0.809017 0.00000 0.309017 -0.809017 0.500000 0.00000 0.809017 0.500000 0.309017 0.00000 55 'point symmetry operation' ? ? 0.809017 0.500000 0.309017 0.00000 -0.500000 0.309017 0.809017 0.00000 0.309017 -0.809017 0.500000 0.00000 56 'point symmetry operation' ? ? 0.309017 0.809017 -0.500000 0.00000 -0.809017 0.500000 0.309017 0.00000 0.500000 0.309017 0.809017 0.00000 57 'point symmetry operation' ? ? 0.309017 -0.809017 -0.500000 0.00000 0.809017 0.500000 -0.309017 0.00000 0.500000 -0.309017 0.809017 0.00000 58 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 59 'point symmetry operation' ? ? -0.309017 -0.809017 0.500000 0.00000 0.809017 -0.500000 -0.309017 0.00000 0.500000 0.309017 0.809017 0.00000 60 'point symmetry operation' ? ? -0.309017 0.809017 0.500000 0.00000 -0.809017 -0.500000 0.309017 0.00000 0.500000 -0.309017 0.809017 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 68 ? ILE A 80 ? ASN A 116 ILE A 128 1 ? 13 HELX_P HELX_P2 AA2 THR A 138 ? ASP A 143 ? THR A 186 ASP A 191 5 ? 6 HELX_P HELX_P3 AA3 GLY A 214 ? GLN A 218 ? GLY A 262 GLN A 266 5 ? 5 HELX_P HELX_P4 AA4 ASN A 285 ? ARG A 290 ? ASN A 333 ARG A 338 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 174 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 140 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 222 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 22 ? ASP A 36 ? VAL A 70 ASP A 84 AA1 2 LYS A 262 ? ILE A 279 ? LYS A 310 ILE A 327 AA1 3 SER A 81 ? GLN A 105 ? SER A 129 GLN A 153 AA1 4 SER A 110 ? PHE A 116 ? SER A 158 PHE A 164 AA2 1 VAL A 22 ? ASP A 36 ? VAL A 70 ASP A 84 AA2 2 LYS A 262 ? ILE A 279 ? LYS A 310 ILE A 327 AA2 3 SER A 81 ? GLN A 105 ? SER A 129 GLN A 153 AA2 4 LYS A 172 ? TRP A 177 ? LYS A 220 TRP A 225 AA3 1 LYS A 49 ? ILE A 51 ? LYS A 97 ILE A 99 AA3 2 LEU A 247 ? SER A 250 ? LEU A 295 SER A 298 AA3 3 LEU A 122 ? GLY A 125 ? LEU A 170 GLY A 173 AA3 4 LYS A 164 ? VAL A 167 ? LYS A 212 VAL A 215 AA4 1 ILE A 134 ? ILE A 136 ? ILE A 182 ILE A 184 AA4 2 ARG A 305 ? VAL A 307 ? ARG A 353 VAL A 355 AA5 1 LEU A 187 ? TRP A 188 ? LEU A 235 TRP A 236 AA5 2 THR A 292 ? LEU A 293 ? THR A 340 LEU A 341 AA6 1 ILE A 220 ? ALA A 226 ? ILE A 268 ALA A 274 AA6 2 SER A 232 ? ILE A 238 ? SER A 280 ILE A 286 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 23 ? N ILE A 71 O HIS A 277 ? O HIS A 325 AA1 2 3 O SER A 270 ? O SER A 318 N CYS A 92 ? N CYS A 140 AA1 3 4 N ARG A 102 ? N ARG A 150 O THR A 113 ? O THR A 161 AA2 1 2 N ILE A 23 ? N ILE A 71 O HIS A 277 ? O HIS A 325 AA2 2 3 O SER A 270 ? O SER A 318 N CYS A 92 ? N CYS A 140 AA2 3 4 N ILE A 93 ? N ILE A 141 O TRP A 173 ? O TRP A 221 AA3 1 2 N LYS A 49 ? N LYS A 97 O LEU A 249 ? O LEU A 297 AA3 2 3 O MET A 248 ? O MET A 296 N GLY A 125 ? N GLY A 173 AA3 3 4 N LEU A 122 ? N LEU A 170 O VAL A 167 ? O VAL A 215 AA4 1 2 N ILE A 136 ? N ILE A 184 O ARG A 305 ? O ARG A 353 AA5 1 2 N LEU A 187 ? N LEU A 235 O LEU A 293 ? O LEU A 341 AA6 1 2 N LYS A 225 ? N LYS A 273 O ALA A 233 ? O ALA A 281 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG A CYS 140 ? ? HG A CYS 222 ? ? 1.47 2 1 O A ILE 128 ? ? H A LYS 328 ? ? 1.50 3 1 O A LYS 97 ? ? H A LEU 297 ? ? 1.57 4 1 O A LEU 170 ? ? H A VAL 215 ? ? 1.58 5 1 OG A SER 291 ? ? OE1 A GLU 361 ? ? 1.93 6 1 O A LYS 76 ? ? ND2 A ASN 116 ? ? 1.95 7 1 O A GLY 348 ? ? NH2 A ARG 353 ? ? 2.11 8 1 OD1 A ASP 84 ? ? OG1 A THR 86 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 217 ? ? -50.64 -73.41 2 1 TYR A 292 ? ? 61.24 64.73 3 1 ASP A 304 ? ? 40.84 -133.17 4 1 THR A 306 ? ? 63.09 -130.76 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8EU6 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8EU6 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 30065 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 5 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'unclassified Densovirinae' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8EU6 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 810 _em_imaging.nominal_defocus_max 4000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source OTHER _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 8EU6 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8EU6 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8EU6 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 1 _em_buffer_component.concentration_units x _em_buffer_component.formula ? _em_buffer_component.id 1 _em_buffer_component.name 'Phosphate buffered saline' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 185880 _em_entity_assembly_naturalsource.organism 'unclassified Densovirinae' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 970 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 46082 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cisTEM 1.0.0 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cisTEM 1.0.0 CLASSIFICATION ? 12 1 ? ? cisTEM 1.0.0 RECONSTRUCTION ? 13 1 ? ? cisTEM 1.0.0 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 1 _em_specimen.details 'Deceased common house crickets, previously showing signs of paralysis, inability to jump, and inability to control movement' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 6997 _em_virus_natural_host.organism 'Acheta domesticus' _em_virus_natural_host.strain ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8EU6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_