HEADER DNA BINDING PROTEIN/DNA 18-OCT-22 8EUE TITLE CLASS1 OF THE INO80-NUCLEOSOME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A TYPE 1; COMPND 11 CHAIN: C, G; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HISTONE H2B 1.1; COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: DNA (147-MER); COMPND 19 CHAIN: I; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: DNA (147-MER); COMPND 23 CHAIN: J; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS; SOURCE 3 ORGANISM_TAXID: 8353; SOURCE 4 GENE: LOC121398065, LOC108703785, LOC121398067, XELAEV_18002543MG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: XENOPUS; SOURCE 9 ORGANISM_TAXID: 8353; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: XENOPUS; SOURCE 14 ORGANISM_TAXID: 8353; SOURCE 15 GENE: LOC494591, H2AC14.L, HIST1H2AJ, HIST1H2AJ.L, SOURCE 16 XELAEV_18003602MG; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: XENOPUS; SOURCE 21 ORGANISM_TAXID: 8353; SOURCE 22 GENE: XENTR_V90029538MG; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630; SOURCE 29 MOL_ID: 6; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 32 ORGANISM_TAXID: 32630 KEYWDS CHROMATIN REMODELER, HEXASOME, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR H.WU,E.MUNOZ,M.GOURDET,G.NARLIKAR,Y.F.CHENG REVDAT 3 03-APR-24 8EUE 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV SEQRES HELIX SHEET REVDAT 3 3 1 ATOM REVDAT 2 02-AUG-23 8EUE 1 JRNL REVDAT 1 12-JUL-23 8EUE 0 JRNL AUTH H.WU,E.N.MUNOZ,L.J.HSIEH,U.S.CHIO,M.A.GOURDET,G.J.NARLIKAR, JRNL AUTH 2 Y.CHENG JRNL TITL REORIENTATION OF INO80 ON HEXASOMES REVEALS BASIS FOR JRNL TITL 2 MECHANISTIC VERSATILITY. JRNL REF SCIENCE V. 381 319 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 37384669 JRNL DOI 10.1126/SCIENCE.ADF4197 REMARK 2 REMARK 2 RESOLUTION. 3.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.480 REMARK 3 NUMBER OF PARTICLES : 22054 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8EUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269425. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : CELL REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CLASS1 NUCLEOSOME OF THE INO80 REMARK 245 -NUCLEOSOME COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : -1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : -2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4300.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, H, I, J, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 PRO A 39 REMARK 465 HIS A 40 REMARK 465 ARG A 41 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 LYS B 17 REMARK 465 ARG B 18 REMARK 465 HIS B 19 REMARK 465 ARG B 20 REMARK 465 LYS B 21 REMARK 465 VAL B 22 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 GLY C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 LYS C 10 REMARK 465 THR C 11 REMARK 465 ARG C 12 REMARK 465 ALA C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 GLU C 122 REMARK 465 SER C 123 REMARK 465 SER C 124 REMARK 465 LYS C 125 REMARK 465 SER C 126 REMARK 465 ALA C 127 REMARK 465 LYS C 128 REMARK 465 SER C 129 REMARK 465 LYS C 130 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 ALA D 5 REMARK 465 PRO D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 LYS D 9 REMARK 465 LYS D 10 REMARK 465 GLY D 11 REMARK 465 SER D 12 REMARK 465 LYS D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 VAL D 16 REMARK 465 THR D 17 REMARK 465 LYS D 18 REMARK 465 THR D 19 REMARK 465 GLN D 20 REMARK 465 LYS D 21 REMARK 465 LYS D 22 REMARK 465 ASP D 23 REMARK 465 GLY D 24 REMARK 465 LYS D 25 REMARK 465 LYS D 26 REMARK 465 ARG D 27 REMARK 465 ARG D 28 REMARK 465 LYS D 29 REMARK 465 THR D 30 REMARK 465 ARG D 31 REMARK 465 LYS D 123 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ARG E 3 REMARK 465 THR E 4 REMARK 465 LYS E 5 REMARK 465 GLN E 6 REMARK 465 THR E 7 REMARK 465 ALA E 8 REMARK 465 ARG E 9 REMARK 465 LYS E 10 REMARK 465 SER E 11 REMARK 465 THR E 12 REMARK 465 GLY E 13 REMARK 465 GLY E 14 REMARK 465 LYS E 15 REMARK 465 ALA E 16 REMARK 465 PRO E 17 REMARK 465 ARG E 18 REMARK 465 LYS E 19 REMARK 465 GLN E 20 REMARK 465 LEU E 21 REMARK 465 ALA E 22 REMARK 465 THR E 23 REMARK 465 LYS E 24 REMARK 465 ALA E 25 REMARK 465 ALA E 26 REMARK 465 ARG E 27 REMARK 465 LYS E 28 REMARK 465 SER E 29 REMARK 465 ALA E 30 REMARK 465 PRO E 31 REMARK 465 ALA E 32 REMARK 465 THR E 33 REMARK 465 GLY E 34 REMARK 465 GLY E 35 REMARK 465 VAL E 36 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLY F 3 REMARK 465 ARG F 4 REMARK 465 GLY F 5 REMARK 465 LYS F 6 REMARK 465 GLY F 7 REMARK 465 GLY F 8 REMARK 465 LYS F 9 REMARK 465 GLY F 10 REMARK 465 LEU F 11 REMARK 465 GLY F 12 REMARK 465 LYS F 13 REMARK 465 GLY F 14 REMARK 465 GLY F 15 REMARK 465 ALA F 16 REMARK 465 LYS F 17 REMARK 465 ARG F 18 REMARK 465 HIS F 19 REMARK 465 ARG F 20 REMARK 465 LYS F 21 REMARK 465 VAL F 22 REMARK 465 LEU F 23 REMARK 465 ARG F 24 REMARK 465 MET H 1 REMARK 465 ALA H 2 REMARK 465 LYS H 3 REMARK 465 SER H 4 REMARK 465 ALA H 5 REMARK 465 PRO H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 LYS H 9 REMARK 465 LYS H 10 REMARK 465 GLY H 11 REMARK 465 SER H 12 REMARK 465 LYS H 13 REMARK 465 LYS H 14 REMARK 465 ALA H 15 REMARK 465 VAL H 16 REMARK 465 THR H 17 REMARK 465 LYS H 18 REMARK 465 THR H 19 REMARK 465 GLN H 20 REMARK 465 LYS H 21 REMARK 465 LYS H 22 REMARK 465 ASP H 23 REMARK 465 GLY H 24 REMARK 465 LYS H 25 REMARK 465 LYS H 26 REMARK 465 ARG H 27 REMARK 465 ARG H 28 REMARK 465 DC I -73 REMARK 465 DT I 73 REMARK 465 DG I 74 REMARK 465 DC I 75 REMARK 465 DA I 76 REMARK 465 DT I 77 REMARK 465 DG I 78 REMARK 465 DT I 79 REMARK 465 DA I 80 REMARK 465 DT I 81 REMARK 465 DT I 82 REMARK 465 DG I 83 REMARK 465 DA I 84 REMARK 465 DA I 85 REMARK 465 DC I 86 REMARK 465 DA I 87 REMARK 465 DG I 88 REMARK 465 DC I 89 REMARK 465 DG I 90 REMARK 465 DA I 91 REMARK 465 DC I 92 REMARK 465 DC I 93 REMARK 465 DT I 94 REMARK 465 DT I 95 REMARK 465 DG I 96 REMARK 465 DC I 97 REMARK 465 DC I 98 REMARK 465 DG I 99 REMARK 465 DG I 100 REMARK 465 DT I 101 REMARK 465 DG I 102 REMARK 465 DC I 103 REMARK 465 DC I 104 REMARK 465 DA I 105 REMARK 465 DG I 106 REMARK 465 DT I 107 REMARK 465 DC I 108 REMARK 465 DG I 109 REMARK 465 DG I 110 REMARK 465 DA I 111 REMARK 465 DT I 112 REMARK 465 DA I 113 REMARK 465 DG I 114 REMARK 465 DT I 115 REMARK 465 DG I 116 REMARK 465 DT I 117 REMARK 465 DT I 118 REMARK 465 DC I 119 REMARK 465 DC I 120 REMARK 465 DG I 121 REMARK 465 DA I 122 REMARK 465 DG I 123 REMARK 465 DC I 124 REMARK 465 DT I 125 REMARK 465 DC I 126 REMARK 465 DC I 127 REMARK 465 DC I 128 REMARK 465 DA I 129 REMARK 465 DC I 130 REMARK 465 DT I 131 REMARK 465 DC I 132 REMARK 465 DT I 133 REMARK 465 DA I 134 REMARK 465 DG I 135 REMARK 465 DA I 136 REMARK 465 DG I 137 REMARK 465 DG I 138 REMARK 465 DA I 139 REMARK 465 DT I 140 REMARK 465 DC I 141 REMARK 465 DC I 142 REMARK 465 DC I 143 REMARK 465 DC I 144 REMARK 465 DG I 145 REMARK 465 DG I 146 REMARK 465 DG I 147 REMARK 465 DT I 148 REMARK 465 DA I 149 REMARK 465 DC I 150 REMARK 465 DC I 151 REMARK 465 DG I 152 REMARK 465 DA I 153 REMARK 465 DT J -153 REMARK 465 DC J -152 REMARK 465 DG J -151 REMARK 465 DG J -150 REMARK 465 DT J -149 REMARK 465 DA J -148 REMARK 465 DC J -147 REMARK 465 DC J -146 REMARK 465 DC J -145 REMARK 465 DG J -144 REMARK 465 DG J -143 REMARK 465 DG J -142 REMARK 465 DG J -141 REMARK 465 DA J -140 REMARK 465 DT J -139 REMARK 465 DC J -138 REMARK 465 DC J -137 REMARK 465 DT J -136 REMARK 465 DC J -135 REMARK 465 DT J -134 REMARK 465 DA J -133 REMARK 465 DG J -132 REMARK 465 DA J -131 REMARK 465 DG J -130 REMARK 465 DT J -129 REMARK 465 DG J -128 REMARK 465 DG J -127 REMARK 465 DG J -126 REMARK 465 DA J -125 REMARK 465 DG J -124 REMARK 465 DC J -123 REMARK 465 DT J -122 REMARK 465 DC J -121 REMARK 465 DG J -120 REMARK 465 DG J -119 REMARK 465 DA J -118 REMARK 465 DA J -117 REMARK 465 DC J -116 REMARK 465 DA J -115 REMARK 465 DC J -114 REMARK 465 DT J -113 REMARK 465 DA J -112 REMARK 465 DT J -111 REMARK 465 DC J -110 REMARK 465 DC J -109 REMARK 465 DG J -108 REMARK 465 DA J -107 REMARK 465 DC J -106 REMARK 465 DT J -105 REMARK 465 DG J -104 REMARK 465 DG J -103 REMARK 465 DC J -102 REMARK 465 DA J -101 REMARK 465 DC J -100 REMARK 465 DC J -99 REMARK 465 DG J -98 REMARK 465 DG J -97 REMARK 465 DC J -96 REMARK 465 DA J -95 REMARK 465 DA J -94 REMARK 465 DG J -93 REMARK 465 DG J -92 REMARK 465 DT J -91 REMARK 465 DC J -90 REMARK 465 DG J -89 REMARK 465 DC J -88 REMARK 465 DT J -87 REMARK 465 DG J -86 REMARK 465 DT J -85 REMARK 465 DT J -84 REMARK 465 DC J -83 REMARK 465 DA J -82 REMARK 465 DA J -81 REMARK 465 DT J -80 REMARK 465 DA J -79 REMARK 465 DC J -78 REMARK 465 DA J -77 REMARK 465 DT J -76 REMARK 465 DG J -75 REMARK 465 DC J -74 REMARK 465 DA J -73 REMARK 465 DG J 73 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 GLY G 3 REMARK 465 ARG G 4 REMARK 465 GLY G 5 REMARK 465 LYS G 6 REMARK 465 GLN G 7 REMARK 465 GLY G 8 REMARK 465 GLY G 9 REMARK 465 LYS G 10 REMARK 465 THR G 11 REMARK 465 ARG G 12 REMARK 465 ALA G 13 REMARK 465 LYS G 14 REMARK 465 ALA G 15 REMARK 465 LYS G 120 REMARK 465 THR G 121 REMARK 465 GLU G 122 REMARK 465 SER G 123 REMARK 465 SER G 124 REMARK 465 LYS G 125 REMARK 465 SER G 126 REMARK 465 ALA G 127 REMARK 465 LYS G 128 REMARK 465 SER G 129 REMARK 465 LYS G 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ILE B 47 CG1 CG2 CD1 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 TYR B 52 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 ILE B 67 CG1 CG2 CD1 REMARK 470 TYR B 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 55 CG CD CE NZ REMARK 470 GLN E 69 CG CD OE1 NE2 REMARK 470 GLN E 86 CG CD OE1 NE2 REMARK 470 ILE E 131 CG1 CG2 CD1 REMARK 470 DT I -72 P OP1 OP2 REMARK 470 DC J -72 P OP1 OP2 REMARK 470 LEU G 52 CG CD1 CD2 REMARK 470 LEU G 116 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 DG I 72 N3 DA J -71 2.14 REMARK 500 N2 DG I 72 C4 DA J -71 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 71 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 83 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP C 91 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU C 98 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 ASP D 66 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU E 60 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU E 71 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU E 93 CA - CB - CG ANGL. DEV. = 22.3 DEGREES REMARK 500 LEU F 63 CA - CB - CG ANGL. DEV. = 22.3 DEGREES REMARK 500 ASP H 66 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 DA I -5 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA I 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT I 38 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT J -61 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA J -34 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J -25 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J -16 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG J 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT J 25 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC J 68 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 122 -9.75 -55.97 REMARK 500 ASN B 26 -62.44 61.80 REMARK 500 ASN C 39 45.40 33.82 REMARK 500 GLN C 105 54.14 33.15 REMARK 500 LYS H 83 55.89 38.30 REMARK 500 THR H 88 -158.48 -151.51 REMARK 500 ASN G 39 42.94 37.74 REMARK 500 LEU G 98 33.61 -98.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28612 RELATED DB: EMDB REMARK 900 CLASS1 OF THE INO80-NUCLEOSOME COMPLEX DBREF1 8EUE A 1 136 UNP A0A310TTQ1_XENLA DBREF2 8EUE A A0A310TTQ1 1 136 DBREF 8EUE B 1 103 UNP P62798 H4_XENBO 1 103 DBREF 8EUE C 1 130 UNP Q6AZJ8 Q6AZJ8_XENLA 1 130 DBREF1 8EUE D 2 123 UNP A0A1B8Y854_XENTR DBREF2 8EUE D A0A1B8Y854 5 126 DBREF1 8EUE E 1 136 UNP A0A310TTQ1_XENLA DBREF2 8EUE E A0A310TTQ1 1 136 DBREF 8EUE F 1 103 UNP P62798 H4_XENBO 1 103 DBREF1 8EUE H 2 123 UNP A0A1B8Y854_XENTR DBREF2 8EUE H A0A1B8Y854 5 126 DBREF 8EUE I -73 153 PDB 8EUE 8EUE -73 153 DBREF 8EUE J -153 73 PDB 8EUE 8EUE -153 73 DBREF 8EUE G 1 130 UNP Q6AZJ8 Q6AZJ8_XENLA 1 130 SEQADV 8EUE ALA A 111 UNP A0A310TTQ CYS 111 CONFLICT SEQADV 8EUE MET D 1 UNP A0A1B8Y85 INITIATING METHIONINE SEQADV 8EUE ALA E 111 UNP A0A310TTQ CYS 111 CONFLICT SEQADV 8EUE MET H 1 UNP A0A1B8Y85 INITIATING METHIONINE SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA SEQRES 2 C 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 C 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 D 123 MET ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SER LYS SEQRES 2 D 123 LYS ALA VAL THR LYS THR GLN LYS LYS ASP GLY LYS LYS SEQRES 3 D 123 ARG ARG LYS THR ARG LYS GLU SER TYR ALA ILE TYR VAL SEQRES 4 D 123 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 5 D 123 SER SER LYS ALA MET SER ILE MET ASN SER PHE VAL ASN SEQRES 6 D 123 ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU SEQRES 7 D 123 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 8 D 123 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 9 D 123 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 10 D 123 LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 H 123 MET ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SER LYS SEQRES 2 H 123 LYS ALA VAL THR LYS THR GLN LYS LYS ASP GLY LYS LYS SEQRES 3 H 123 ARG ARG LYS THR ARG LYS GLU SER TYR ALA ILE TYR VAL SEQRES 4 H 123 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 5 H 123 SER SER LYS ALA MET SER ILE MET ASN SER PHE VAL ASN SEQRES 6 H 123 ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU SEQRES 7 H 123 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 8 H 123 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 9 H 123 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 10 H 123 LYS TYR THR SER ALA LYS SEQRES 1 I 227 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 I 227 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 I 227 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 I 227 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 I 227 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 I 227 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 I 227 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 I 227 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 I 227 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 I 227 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 I 227 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 I 227 DC DT DG DT DG DC DA DT DG DT DA DT DT SEQRES 13 I 227 DG DA DA DC DA DG DC DG DA DC DC DT DT SEQRES 14 I 227 DG DC DC DG DG DT DG DC DC DA DG DT DC SEQRES 15 I 227 DG DG DA DT DA DG DT DG DT DT DC DC DG SEQRES 16 I 227 DA DG DC DT DC DC DC DA DC DT DC DT DA SEQRES 17 I 227 DG DA DG DG DA DT DC DC DC DC DG DG DG SEQRES 18 I 227 DT DA DC DC DG DA SEQRES 1 J 227 DT DC DG DG DT DA DC DC DC DG DG DG DG SEQRES 2 J 227 DA DT DC DC DT DC DT DA DG DA DG DT DG SEQRES 3 J 227 DG DG DA DG DC DT DC DG DG DA DA DC DA SEQRES 4 J 227 DC DT DA DT DC DC DG DA DC DT DG DG DC SEQRES 5 J 227 DA DC DC DG DG DC DA DA DG DG DT DC DG SEQRES 6 J 227 DC DT DG DT DT DC DA DA DT DA DC DA DT SEQRES 7 J 227 DG DC DA DC DA DG DG DA DT DG DT DA DT SEQRES 8 J 227 DA DT DA DT DC DT DG DA DC DA DC DG DT SEQRES 9 J 227 DG DC DC DT DG DG DA DG DA DC DT DA DG SEQRES 10 J 227 DG DG DA DG DT DA DA DT DC DC DC DC DT SEQRES 11 J 227 DT DG DG DC DG DG DT DT DA DA DA DA DC SEQRES 12 J 227 DG DC DG DG DG DG DG DA DC DA DG DC DG SEQRES 13 J 227 DC DG DT DA DC DG DT DG DC DG DT DT DT SEQRES 14 J 227 DA DA DG DC DG DG DT DG DC DT DA DG DA SEQRES 15 J 227 DG DC DT DG DT DC DT DA DC DG DA DC DC SEQRES 16 J 227 DA DA DT DT DG DA DG DC DG DG DC DC DT SEQRES 17 J 227 DC DG DG DC DA DC DC DG DG DG DA DT DT SEQRES 18 J 227 DC DT DC DC DA DG SEQRES 1 G 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA SEQRES 2 G 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 G 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 G 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 G 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 G 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 G 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP SEQRES 8 G 130 GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA SEQRES 9 G 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU SEQRES 10 G 130 PRO LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS HELIX 1 AA1 GLY A 45 SER A 58 1 14 HELIX 2 AA2 ARG A 64 LYS A 80 1 17 HELIX 3 AA3 GLN A 86 ALA A 115 1 30 HELIX 4 AA4 MET A 121 ARG A 132 1 12 HELIX 5 AA5 ASN B 26 ILE B 30 5 5 HELIX 6 AA6 THR B 31 GLY B 43 1 13 HELIX 7 AA7 LEU B 50 ALA B 77 1 28 HELIX 8 AA8 THR B 83 GLN B 94 1 12 HELIX 9 AA9 THR C 17 ALA C 22 1 6 HELIX 10 AB1 PRO C 27 LYS C 37 1 11 HELIX 11 AB2 GLY C 47 ASP C 73 1 27 HELIX 12 AB3 ILE C 80 ARG C 89 1 10 HELIX 13 AB4 ASP C 91 GLY C 99 1 9 HELIX 14 AB5 ALA D 36 HIS D 47 1 12 HELIX 15 AB6 SER D 53 ASN D 82 1 30 HELIX 16 AB7 THR D 88 LEU D 100 1 13 HELIX 17 AB8 PRO D 101 ALA D 122 1 22 HELIX 18 AB9 GLY E 45 SER E 58 1 14 HELIX 19 AC1 ARG E 64 LYS E 80 1 17 HELIX 20 AC2 GLN E 86 ALA E 115 1 30 HELIX 21 AC3 MET E 121 ARG E 132 1 12 HELIX 22 AC4 ASP F 25 ILE F 30 5 6 HELIX 23 AC5 THR F 31 GLY F 43 1 13 HELIX 24 AC6 LEU F 50 ALA F 77 1 28 HELIX 25 AC7 THR F 83 GLN F 94 1 12 HELIX 26 AC8 TYR H 35 HIS H 47 1 13 HELIX 27 AC9 SER H 53 ASN H 82 1 30 HELIX 28 AD1 THR H 88 LEU H 99 1 12 HELIX 29 AD2 PRO H 101 SER H 121 1 21 HELIX 30 AD3 THR G 17 GLY G 23 1 7 HELIX 31 AD4 PRO G 27 GLY G 38 1 12 HELIX 32 AD5 ALA G 46 ASP G 73 1 28 HELIX 33 AD6 ILE G 80 ASN G 90 1 11 HELIX 34 AD7 ASP G 91 LEU G 98 1 8 SHEET 1 AA1 2 THR A 119 ILE A 120 0 SHEET 2 AA1 2 ARG B 46 ILE B 47 1 O ARG B 46 N ILE A 120 SHEET 1 AA2 2 THR B 97 LEU B 98 0 SHEET 2 AA2 2 VAL G 101 THR G 102 1 O THR G 102 N THR B 97 SHEET 1 AA3 2 ARG C 43 VAL C 44 0 SHEET 2 AA3 2 THR D 86 ILE D 87 1 O ILE D 87 N ARG C 43 SHEET 1 AA4 2 ARG C 78 ILE C 79 0 SHEET 2 AA4 2 GLY D 51 ILE D 52 1 O GLY D 51 N ILE C 79 SHEET 1 AA5 2 ARG E 84 PHE E 85 0 SHEET 2 AA5 2 THR F 81 VAL F 82 1 O VAL F 82 N ARG E 84 SHEET 1 AA6 2 THR H 86 ILE H 87 0 SHEET 2 AA6 2 ARG G 43 VAL G 44 1 O ARG G 43 N ILE H 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000