HEADER LIGASE/INHIBITOR 21-OCT-22 8EVX TITLE DDLA FROM PSEUDOMONAS AERUGINOSA PAO1 IN COMPLEX WITH ADP AND TITLE 2 PHOSPHORYLATED D-CYCLOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE A,D-ALANYLALANINE SYNTHETASE A; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: DDLA, PA4201; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ATP-GRASP, LIGASE, LIGASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING REVDAT 3 20-DEC-23 8EVX 1 JRNL REVDAT 2 06-SEP-23 8EVX 1 JRNL REVDAT 1 30-AUG-23 8EVX 0 JRNL AUTH J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING JRNL TITL COMPARATIVE FUNCTIONAL AND STRUCTURAL ANALYSIS OF JRNL TITL 2 PSEUDOMONAS AERUGINOSA D-ALANINE-D-ALANINE LIGASE ISOFORMS JRNL TITL 3 AS PROSPECTIVE ANTIBIOTIC TARGETS. JRNL REF FEBS J. V. 290 5536 2023 JRNL REFN ISSN 1742-464X JRNL PMID 37581574 JRNL DOI 10.1111/FEBS.16932 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 84946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 4372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1800 - 4.8100 0.99 2901 174 0.1900 0.1859 REMARK 3 2 4.8100 - 3.8200 0.99 2891 151 0.1663 0.1686 REMARK 3 3 3.8200 - 3.3400 0.86 2475 134 0.1824 0.1909 REMARK 3 4 3.3400 - 3.0300 0.94 2725 151 0.1970 0.2050 REMARK 3 5 3.0300 - 2.8200 0.96 2732 160 0.2040 0.2103 REMARK 3 6 2.8200 - 2.6500 0.97 2821 158 0.2083 0.2317 REMARK 3 7 2.6500 - 2.5200 0.97 2801 134 0.2001 0.2330 REMARK 3 8 2.5200 - 2.4100 0.98 2834 156 0.1980 0.2089 REMARK 3 9 2.4100 - 2.3200 0.96 2777 156 0.1948 0.2234 REMARK 3 10 2.3200 - 2.2400 0.96 2773 138 0.1972 0.2255 REMARK 3 11 2.2400 - 2.1700 0.96 2736 163 0.1979 0.2288 REMARK 3 12 2.1700 - 2.1000 0.95 2777 143 0.1996 0.2092 REMARK 3 13 2.1000 - 2.0500 0.95 2706 154 0.2024 0.2382 REMARK 3 14 2.0500 - 2.0000 0.96 2827 120 0.2006 0.2235 REMARK 3 15 2.0000 - 1.9500 0.94 2694 170 0.2109 0.2714 REMARK 3 16 1.9500 - 1.9100 0.88 2508 154 0.2125 0.2581 REMARK 3 17 1.9100 - 1.8700 0.81 2374 127 0.2122 0.2416 REMARK 3 18 1.8700 - 1.8400 0.90 2571 117 0.2206 0.2507 REMARK 3 19 1.8400 - 1.8000 0.91 2645 139 0.2189 0.2305 REMARK 3 20 1.8000 - 1.7700 0.92 2648 139 0.2089 0.2548 REMARK 3 21 1.7700 - 1.7500 0.92 2587 141 0.2113 0.2519 REMARK 3 22 1.7500 - 1.7200 0.91 2654 144 0.2064 0.2486 REMARK 3 23 1.7200 - 1.6900 0.92 2624 144 0.2110 0.2363 REMARK 3 24 1.6900 - 1.6700 0.91 2647 153 0.2159 0.2501 REMARK 3 25 1.6700 - 1.6500 0.93 2616 148 0.2121 0.2387 REMARK 3 26 1.6500 - 1.6300 0.92 2649 135 0.2291 0.2633 REMARK 3 27 1.6300 - 1.6100 0.92 2661 155 0.2265 0.2593 REMARK 3 28 1.6100 - 1.5900 0.92 2603 119 0.2266 0.2590 REMARK 3 29 1.5900 - 1.5700 0.92 2689 158 0.2383 0.2701 REMARK 3 30 1.5700 - 1.5500 0.92 2628 137 0.2531 0.3134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4748 REMARK 3 ANGLE : 0.829 6454 REMARK 3 CHIRALITY : 0.049 748 REMARK 3 PLANARITY : 0.006 837 REMARK 3 DIHEDRAL : 12.872 697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 39.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 8EVW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.52650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 4 REMARK 465 SER A 78 REMARK 465 GLY A 79 REMARK 465 LYS A 80 REMARK 465 GLN A 81 REMARK 465 SER A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 SER A 85 REMARK 465 ALA A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 ALA A 90 REMARK 465 LYS A 339 REMARK 465 GLY A 340 REMARK 465 ALA A 341 REMARK 465 ARG A 342 REMARK 465 LYS A 343 REMARK 465 ALA A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 ARG B 57 REMARK 465 LEU B 58 REMARK 465 LEU B 59 REMARK 465 ALA B 60 REMARK 465 SER B 61 REMARK 465 LYS B 62 REMARK 465 VAL B 63 REMARK 465 LYS B 64 REMARK 465 GLU B 65 REMARK 465 VAL B 66 REMARK 465 PRO B 67 REMARK 465 PRO B 68 REMARK 465 ASP B 69 REMARK 465 SER B 70 REMARK 465 ASP B 71 REMARK 465 SER B 72 REMARK 465 LEU B 73 REMARK 465 ALA B 74 REMARK 465 ILE B 75 REMARK 465 ILE B 76 REMARK 465 ARG B 77 REMARK 465 SER B 78 REMARK 465 GLY B 79 REMARK 465 LYS B 80 REMARK 465 GLN B 81 REMARK 465 SER B 82 REMARK 465 LEU B 83 REMARK 465 LEU B 84 REMARK 465 SER B 85 REMARK 465 ALA B 86 REMARK 465 LYS B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 ARG B 342 REMARK 465 LYS B 343 REMARK 465 ALA B 344 REMARK 465 ARG B 345 REMARK 465 SER B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 ASP B 4 CG OD1 OD2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ASP B 203 CG OD1 OD2 REMARK 470 ASP B 223 CG OD1 OD2 REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 -89.16 -120.56 REMARK 500 SER B 47 -65.20 -133.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 814 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 7.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 131 O REMARK 620 2 GLU A 299 OE1 128.0 REMARK 620 3 VAL A 300 O 79.2 90.6 REMARK 620 4 ASN A 301 OD1 159.5 55.5 80.7 REMARK 620 5 HOH A 589 O 91.3 135.6 76.0 80.4 REMARK 620 6 HOH A 606 O 149.0 64.6 131.6 50.9 93.2 REMARK 620 7 HOH A 626 O 83.4 87.5 156.2 117.0 120.7 68.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 286 OD2 REMARK 620 2 GLU A 299 OE2 89.8 REMARK 620 3 ADP A 401 O1B 174.0 88.1 REMARK 620 4 ADP A 401 O2A 103.3 89.1 82.4 REMARK 620 5 DS0 A 402 O9 89.8 90.6 84.6 166.9 REMARK 620 6 HOH A 620 O 92.7 177.4 89.3 90.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 299 OE1 REMARK 620 2 GLU A 299 OE2 60.4 REMARK 620 3 ASN A 301 OD1 88.8 98.3 REMARK 620 4 ADP A 401 O3B 86.1 81.4 174.2 REMARK 620 5 DS0 A 402 O10 159.9 99.8 91.0 94.7 REMARK 620 6 HOH A 606 O 97.4 156.9 86.7 91.4 102.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 131 O REMARK 620 2 GLU B 299 OE1 128.5 REMARK 620 3 VAL B 300 O 80.0 87.7 REMARK 620 4 ASN B 301 OD1 157.5 54.8 77.8 REMARK 620 5 HOH B 555 O 89.9 135.3 76.3 80.9 REMARK 620 6 HOH B 593 O 83.6 90.2 157.3 118.8 119.5 REMARK 620 7 HOH B 618 O 149.2 67.6 130.0 52.3 91.4 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 286 OD2 REMARK 620 2 GLU B 299 OE2 89.2 REMARK 620 3 ADP B 401 O1B 173.7 88.6 REMARK 620 4 ADP B 401 O2A 103.8 90.8 82.1 REMARK 620 5 DS0 B 402 O9 90.6 90.2 83.5 165.6 REMARK 620 6 HOH B 617 O 91.5 177.6 90.4 91.3 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 299 OE1 REMARK 620 2 GLU B 299 OE2 58.5 REMARK 620 3 ASN B 301 OD1 84.3 91.6 REMARK 620 4 ADP B 401 O2B 89.6 85.3 173.9 REMARK 620 5 DS0 B 402 O11 156.9 99.3 90.5 95.2 REMARK 620 6 HOH B 618 O 98.4 156.8 88.0 92.8 103.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EVV RELATED DB: PDB REMARK 900 STRUCTURE OF THE APO FORM OF THE SAME PROTEIN REMARK 900 RELATED ID: 8EVW RELATED DB: PDB REMARK 900 STRUCTURE OF THE PRODUCT BOUND FORM OF THE SAME PROTEIN DBREF 8EVX A 1 346 UNP Q9HWI0 DDLA_PSEAE 1 346 DBREF 8EVX B 1 346 UNP Q9HWI0 DDLA_PSEAE 1 346 SEQADV 8EVX SER A 0 UNP Q9HWI0 EXPRESSION TAG SEQADV 8EVX SER B 0 UNP Q9HWI0 EXPRESSION TAG SEQRES 1 A 347 SER MET GLY GLN ASP LYS LEU LYS VAL ALA VAL LEU PHE SEQRES 2 A 347 GLY GLY SER SER GLU GLU ARG ASP VAL SER ILE ALA SER SEQRES 3 A 347 GLY ALA GLN VAL ILE GLN ALA LEU ARG SER ALA GLY HIS SEQRES 4 A 347 GLN VAL LEU ALA VAL ASP THR ALA SER GLY LEU LEU GLY SEQRES 5 A 347 ALA GLU GLU GLU ARG ARG LEU LEU ALA SER LYS VAL LYS SEQRES 6 A 347 GLU VAL PRO PRO ASP SER ASP SER LEU ALA ILE ILE ARG SEQRES 7 A 347 SER GLY LYS GLN SER LEU LEU SER ALA GLY GLU LEU ALA SEQRES 8 A 347 GLY VAL ASP VAL PHE PHE LEU ALA LEU HIS GLY GLY THR SEQRES 9 A 347 GLY GLU ASP GLY THR LEU GLN ALA LEU LEU ASP ALA GLY SEQRES 10 A 347 GLY PHE ALA TYR THR GLY SER GLY HIS LEU ALA SER ALA SEQRES 11 A 347 MET ALA MET ASP LYS ASP VAL ALA LYS ARG LEU PHE LEU SEQRES 12 A 347 ALA ALA GLY VAL GLU THR ALA SER TRP LEU MET ALA PRO SEQRES 13 A 347 ALA SER GLU GLU GLU VAL ARG GLU GLN LEU GLY PHE PRO SEQRES 14 A 347 LEU VAL VAL LYS PRO ASN SER GLN GLY SER THR VAL GLY SEQRES 15 A 347 LEU SER ILE VAL HIS SER GLN ALA GLU LEU GLN PRO ALA SEQRES 16 A 347 ILE GLU LEU ALA GLY ARG TYR GLY ASP GLU VAL MET LEU SEQRES 17 A 347 GLU ARG PHE VAL ALA GLY ARG GLU VAL THR VAL GLY VAL SEQRES 18 A 347 LEU ASP ASP GLN ALA LEU PRO VAL GLY GLU ILE LEU LEU SEQRES 19 A 347 GLY GLY GLN GLU VAL PHE ASP TYR GLU HIS LYS TYR GLN SEQRES 20 A 347 ALA GLY ALA VAL ARG GLU VAL PHE PRO ALA ASP LEU PRO SEQRES 21 A 347 PRO ALA ILE ALA ALA GLU ALA GLN ARG LEU ALA LEU LYS SEQRES 22 A 347 VAL HIS ARG ALA LEU LYS LEU SER GLY TYR SER ARG THR SEQRES 23 A 347 ASP PHE ARG LEU ASP GLU GLN GLY ARG LEU TRP CYS LEU SEQRES 24 A 347 GLU VAL ASN THR LEU PRO GLY MET THR ALA THR SER LEU SEQRES 25 A 347 LEU PRO GLN ALA ALA ALA ALA ALA GLY ILE GLY PHE ALA SEQRES 26 A 347 GLU LEU CYS GLU ARG ILE CYS ARG LEU GLY ILE GLU ARG SEQRES 27 A 347 CYS LYS GLY ALA ARG LYS ALA ARG SER SEQRES 1 B 347 SER MET GLY GLN ASP LYS LEU LYS VAL ALA VAL LEU PHE SEQRES 2 B 347 GLY GLY SER SER GLU GLU ARG ASP VAL SER ILE ALA SER SEQRES 3 B 347 GLY ALA GLN VAL ILE GLN ALA LEU ARG SER ALA GLY HIS SEQRES 4 B 347 GLN VAL LEU ALA VAL ASP THR ALA SER GLY LEU LEU GLY SEQRES 5 B 347 ALA GLU GLU GLU ARG ARG LEU LEU ALA SER LYS VAL LYS SEQRES 6 B 347 GLU VAL PRO PRO ASP SER ASP SER LEU ALA ILE ILE ARG SEQRES 7 B 347 SER GLY LYS GLN SER LEU LEU SER ALA GLY GLU LEU ALA SEQRES 8 B 347 GLY VAL ASP VAL PHE PHE LEU ALA LEU HIS GLY GLY THR SEQRES 9 B 347 GLY GLU ASP GLY THR LEU GLN ALA LEU LEU ASP ALA GLY SEQRES 10 B 347 GLY PHE ALA TYR THR GLY SER GLY HIS LEU ALA SER ALA SEQRES 11 B 347 MET ALA MET ASP LYS ASP VAL ALA LYS ARG LEU PHE LEU SEQRES 12 B 347 ALA ALA GLY VAL GLU THR ALA SER TRP LEU MET ALA PRO SEQRES 13 B 347 ALA SER GLU GLU GLU VAL ARG GLU GLN LEU GLY PHE PRO SEQRES 14 B 347 LEU VAL VAL LYS PRO ASN SER GLN GLY SER THR VAL GLY SEQRES 15 B 347 LEU SER ILE VAL HIS SER GLN ALA GLU LEU GLN PRO ALA SEQRES 16 B 347 ILE GLU LEU ALA GLY ARG TYR GLY ASP GLU VAL MET LEU SEQRES 17 B 347 GLU ARG PHE VAL ALA GLY ARG GLU VAL THR VAL GLY VAL SEQRES 18 B 347 LEU ASP ASP GLN ALA LEU PRO VAL GLY GLU ILE LEU LEU SEQRES 19 B 347 GLY GLY GLN GLU VAL PHE ASP TYR GLU HIS LYS TYR GLN SEQRES 20 B 347 ALA GLY ALA VAL ARG GLU VAL PHE PRO ALA ASP LEU PRO SEQRES 21 B 347 PRO ALA ILE ALA ALA GLU ALA GLN ARG LEU ALA LEU LYS SEQRES 22 B 347 VAL HIS ARG ALA LEU LYS LEU SER GLY TYR SER ARG THR SEQRES 23 B 347 ASP PHE ARG LEU ASP GLU GLN GLY ARG LEU TRP CYS LEU SEQRES 24 B 347 GLU VAL ASN THR LEU PRO GLY MET THR ALA THR SER LEU SEQRES 25 B 347 LEU PRO GLN ALA ALA ALA ALA ALA GLY ILE GLY PHE ALA SEQRES 26 B 347 GLU LEU CYS GLU ARG ILE CYS ARG LEU GLY ILE GLU ARG SEQRES 27 B 347 CYS LYS GLY ALA ARG LYS ALA ARG SER HET ADP A 401 27 HET DS0 A 402 11 HET MG A 403 1 HET MG A 404 1 HET K A 405 1 HET ADP B 401 27 HET DS0 B 402 11 HET MG B 403 1 HET MG B 404 1 HET K B 405 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM DS0 [(4R)-4-AZANYL-4,5-DIHYDRO-1,2-OXAZOL-3-YL] DIHYDROGEN HETNAM 2 DS0 PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 DS0 2(C3 H7 N2 O5 P) FORMUL 5 MG 4(MG 2+) FORMUL 7 K 2(K 1+) FORMUL 13 HOH *642(H2 O) HELIX 1 AA1 GLU A 18 ALA A 36 1 19 HELIX 2 AA2 GLY A 51 ALA A 60 1 10 HELIX 3 AA3 ASP A 69 ARG A 77 1 9 HELIX 4 AA4 GLY A 101 ASP A 106 1 6 HELIX 5 AA5 GLY A 107 GLY A 116 1 10 HELIX 6 AA6 GLY A 124 ASP A 133 1 10 HELIX 7 AA7 ASP A 133 ALA A 144 1 12 HELIX 8 AA8 SER A 157 LEU A 165 1 9 HELIX 9 AA9 SER A 187 ALA A 189 5 3 HELIX 10 AB1 GLU A 190 ARG A 200 1 11 HELIX 11 AB2 ASP A 240 GLN A 246 1 7 HELIX 12 AB3 PRO A 259 LEU A 277 1 19 HELIX 13 AB4 SER A 310 ALA A 319 1 10 HELIX 14 AB5 GLY A 322 CYS A 338 1 17 HELIX 15 AB6 GLU B 18 ALA B 36 1 19 HELIX 16 AB7 GLY B 51 ARG B 56 1 6 HELIX 17 AB8 GLY B 101 ASP B 106 1 6 HELIX 18 AB9 GLY B 107 GLY B 117 1 11 HELIX 19 AC1 GLY B 124 ASP B 133 1 10 HELIX 20 AC2 ASP B 133 ALA B 144 1 12 HELIX 21 AC3 SER B 157 LEU B 165 1 9 HELIX 22 AC4 SER B 187 ALA B 189 5 3 HELIX 23 AC5 GLU B 190 ARG B 200 1 11 HELIX 24 AC6 ASP B 240 GLN B 246 1 7 HELIX 25 AC7 PRO B 259 LEU B 277 1 19 HELIX 26 AC8 SER B 310 ALA B 319 1 10 HELIX 27 AC9 GLY B 322 CYS B 338 1 17 SHEET 1 AA1 3 GLN A 39 ASP A 44 0 SHEET 2 AA1 3 LYS A 7 PHE A 12 1 N VAL A 10 O LEU A 41 SHEET 3 AA1 3 VAL A 94 LEU A 97 1 O PHE A 96 N LEU A 11 SHEET 1 AA2 4 TRP A 151 MET A 153 0 SHEET 2 AA2 4 VAL A 205 ARG A 209 -1 O LEU A 207 N LEU A 152 SHEET 3 AA2 4 LEU A 169 PRO A 173 -1 N VAL A 170 O GLU A 208 SHEET 4 AA2 4 SER A 183 VAL A 185 -1 O VAL A 185 N LEU A 169 SHEET 1 AA3 4 GLN A 224 ALA A 225 0 SHEET 2 AA3 4 ARG A 214 LEU A 221 -1 N LEU A 221 O GLN A 224 SHEET 3 AA3 4 GLY A 229 LEU A 232 -1 O ILE A 231 N GLU A 215 SHEET 4 AA3 4 ARG A 251 VAL A 253 -1 O ARG A 251 N LEU A 232 SHEET 1 AA4 4 GLN A 224 ALA A 225 0 SHEET 2 AA4 4 ARG A 214 LEU A 221 -1 N LEU A 221 O GLN A 224 SHEET 3 AA4 4 TYR A 282 LEU A 289 -1 O PHE A 287 N VAL A 216 SHEET 4 AA4 4 LEU A 295 ASN A 301 -1 O LEU A 298 N ASP A 286 SHEET 1 AA5 4 GLY B 48 LEU B 49 0 SHEET 2 AA5 4 GLN B 39 ASP B 44 -1 N ASP B 44 O GLY B 48 SHEET 3 AA5 4 LYS B 7 PHE B 12 1 N VAL B 8 O GLN B 39 SHEET 4 AA5 4 VAL B 94 LEU B 97 1 O PHE B 96 N LEU B 11 SHEET 1 AA6 4 TRP B 151 MET B 153 0 SHEET 2 AA6 4 VAL B 205 ARG B 209 -1 O LEU B 207 N LEU B 152 SHEET 3 AA6 4 LEU B 169 PRO B 173 -1 N VAL B 170 O GLU B 208 SHEET 4 AA6 4 SER B 183 VAL B 185 -1 O VAL B 185 N LEU B 169 SHEET 1 AA7 4 GLN B 224 ALA B 225 0 SHEET 2 AA7 4 ARG B 214 LEU B 221 -1 N LEU B 221 O GLN B 224 SHEET 3 AA7 4 GLY B 229 LEU B 232 -1 O GLY B 229 N THR B 217 SHEET 4 AA7 4 ARG B 251 VAL B 253 -1 O ARG B 251 N LEU B 232 SHEET 1 AA8 4 GLN B 224 ALA B 225 0 SHEET 2 AA8 4 ARG B 214 LEU B 221 -1 N LEU B 221 O GLN B 224 SHEET 3 AA8 4 TYR B 282 LEU B 289 -1 O PHE B 287 N VAL B 216 SHEET 4 AA8 4 LEU B 295 ASN B 301 -1 O TRP B 296 N ARG B 288 LINK O ALA A 131 K K A 405 1555 1555 2.88 LINK OD2 ASP A 286 MG MG A 404 1555 1555 2.17 LINK OE1 GLU A 299 MG MG A 403 1555 1555 2.19 LINK OE2 GLU A 299 MG MG A 403 1555 1555 2.18 LINK OE2 GLU A 299 MG MG A 404 1555 1555 2.03 LINK OE1 GLU A 299 K K A 405 1555 1555 2.84 LINK O VAL A 300 K K A 405 1555 1555 2.75 LINK OD1 ASN A 301 MG MG A 403 1555 1555 2.06 LINK OD1 ASN A 301 K K A 405 1555 1555 3.43 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.10 LINK O1B ADP A 401 MG MG A 404 1555 1555 2.09 LINK O2A ADP A 401 MG MG A 404 1555 1555 2.00 LINK O10 DS0 A 402 MG MG A 403 1555 1555 1.97 LINK O9 DS0 A 402 MG MG A 404 1555 1555 1.94 LINK MG MG A 403 O HOH A 606 1555 1555 2.08 LINK MG MG A 404 O HOH A 620 1555 1555 2.06 LINK K K A 405 O HOH A 589 1555 1555 2.95 LINK K K A 405 O HOH A 606 1555 1555 3.15 LINK K K A 405 O HOH A 626 1555 1555 2.92 LINK O ALA B 131 K K B 405 1555 1555 2.85 LINK OD2 ASP B 286 MG MG B 404 1555 1555 2.06 LINK OE1 GLU B 299 MG MG B 403 1555 1555 2.28 LINK OE2 GLU B 299 MG MG B 403 1555 1555 2.21 LINK OE2 GLU B 299 MG MG B 404 1555 1555 2.02 LINK OE1 GLU B 299 K K B 405 1555 1555 2.82 LINK O VAL B 300 K K B 405 1555 1555 2.74 LINK OD1 ASN B 301 MG MG B 403 1555 1555 2.11 LINK OD1 ASN B 301 K K B 405 1555 1555 3.47 LINK O2B ADP B 401 MG MG B 403 1555 1555 2.05 LINK O1B ADP B 401 MG MG B 404 1555 1555 2.11 LINK O2A ADP B 401 MG MG B 404 1555 1555 2.03 LINK O11 DS0 B 402 MG MG B 403 1555 1555 1.98 LINK O9 DS0 B 402 MG MG B 404 1555 1555 2.03 LINK MG MG B 403 O HOH B 618 1555 1555 2.11 LINK MG MG B 404 O HOH B 617 1555 1555 2.06 LINK K K B 405 O HOH B 555 1555 1555 2.90 LINK K K B 405 O HOH B 593 1555 1555 2.93 LINK K K B 405 O HOH B 618 1555 1555 3.15 CISPEP 1 ALA A 154 PRO A 155 0 4.07 CISPEP 2 PHE A 167 PRO A 168 0 1.67 CISPEP 3 PHE A 254 PRO A 255 0 -7.04 CISPEP 4 ALA B 154 PRO B 155 0 0.74 CISPEP 5 PHE B 167 PRO B 168 0 -2.39 CISPEP 6 PHE B 254 PRO B 255 0 -5.34 CRYST1 47.467 133.053 53.852 90.00 109.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021067 0.000000 0.007324 0.00000 SCALE2 0.000000 0.007516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019660 0.00000