HEADER RNA BINDING PROTEIN/RNA 26-OCT-22 8EY8 TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH AAAAGA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*AP*AP*AP*GP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 1 01-NOV-23 8EY8 0 JRNL AUTH G.KOZLOV,J.JIANG,K.GEHRING JRNL TITL STRUCTURAL INSIGHTS INTO POLY(A) TAIL STABILIZATION VIA JRNL TITL 2 3'-END GUANYLATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 23885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1900 - 2.6000 0.97 3022 163 0.1802 0.1786 REMARK 3 2 2.6000 - 2.0700 1.00 3015 159 0.1811 0.1967 REMARK 3 3 2.0700 - 1.8000 1.00 2938 169 0.1804 0.1749 REMARK 3 4 1.8000 - 1.6400 1.00 2964 138 0.1803 0.2268 REMARK 3 5 1.6400 - 1.5200 1.00 2932 152 0.1717 0.1929 REMARK 3 6 1.5200 - 1.4300 1.00 2909 159 0.1884 0.2355 REMARK 3 7 1.4300 - 1.3600 0.95 2791 125 0.2192 0.2564 REMARK 3 8 1.3600 - 1.3000 0.73 2135 114 0.2427 0.2789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.131 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.057 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 849 REMARK 3 ANGLE : 1.589 1166 REMARK 3 CHIRALITY : 0.113 133 REMARK 3 PLANARITY : 0.014 137 REMARK 3 DIHEDRAL : 9.839 144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8164 17.5897 32.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1960 REMARK 3 T33: 0.1307 T12: -0.0250 REMARK 3 T13: -0.0059 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.3895 L22: 0.3224 REMARK 3 L33: 0.2940 L12: -0.1294 REMARK 3 L13: 0.1623 L23: 0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.1137 S13: 0.0368 REMARK 3 S21: 0.2402 S22: -0.0879 S23: 0.0739 REMARK 3 S31: -0.1772 S32: 0.0981 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6073 29.5389 23.6106 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1811 REMARK 3 T33: 0.1789 T12: -0.0552 REMARK 3 T13: -0.0316 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.6679 REMARK 3 L33: 0.1753 L12: -0.2128 REMARK 3 L13: -0.0774 L23: 0.0463 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: -0.2697 S13: 0.0076 REMARK 3 S21: 0.1889 S22: -0.3677 S23: -0.1989 REMARK 3 S31: -0.5068 S32: 0.4330 S33: -0.1701 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4426 27.2017 15.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1987 REMARK 3 T33: 0.1684 T12: -0.0192 REMARK 3 T13: 0.0049 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.2829 L22: 0.5199 REMARK 3 L33: 0.1270 L12: -0.2057 REMARK 3 L13: 0.3710 L23: -0.0488 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: 0.1955 S13: -0.0553 REMARK 3 S21: -0.1343 S22: -0.2194 S23: -0.3062 REMARK 3 S31: -0.0233 S32: 0.5184 S33: -0.0194 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7534 25.8646 18.2711 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.1922 REMARK 3 T33: 0.3057 T12: 0.0038 REMARK 3 T13: 0.0048 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 0.1387 L22: 0.0220 REMARK 3 L33: 0.3818 L12: 0.0552 REMARK 3 L13: 0.1698 L23: 0.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.2903 S13: 0.2743 REMARK 3 S21: -0.1319 S22: 0.2938 S23: 0.8190 REMARK 3 S31: 0.1330 S32: -0.4158 S33: 0.0197 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7170 13.1012 23.3987 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1886 REMARK 3 T33: 0.1702 T12: 0.0040 REMARK 3 T13: -0.0014 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.2777 L22: 0.2831 REMARK 3 L33: 0.1571 L12: -0.2537 REMARK 3 L13: 0.2612 L23: -0.1369 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.0673 S13: -0.1276 REMARK 3 S21: -0.0796 S22: -0.0527 S23: -0.0205 REMARK 3 S31: 0.1423 S32: 0.0739 S33: -0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0442 14.4790 30.7722 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1673 REMARK 3 T33: 0.1931 T12: -0.0096 REMARK 3 T13: -0.0086 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1663 L22: 1.0817 REMARK 3 L33: 1.0322 L12: -0.3708 REMARK 3 L13: 0.2596 L23: -0.7852 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -0.1788 S13: 0.1720 REMARK 3 S21: -0.3062 S22: 0.0378 S23: 0.4474 REMARK 3 S31: 0.1773 S32: -0.1543 S33: 0.0468 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 386 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2687 24.2402 30.9545 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.3086 REMARK 3 T33: 0.2740 T12: -0.0380 REMARK 3 T13: 0.0377 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0714 L22: 0.0423 REMARK 3 L33: 0.0772 L12: -0.0113 REMARK 3 L13: -0.0592 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.3919 S12: -0.9499 S13: -0.3061 REMARK 3 S21: 0.7905 S22: -0.1702 S23: 0.4273 REMARK 3 S31: 0.0424 S32: -0.4997 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5651 23.4729 24.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.1826 REMARK 3 T33: 0.2522 T12: -0.0089 REMARK 3 T13: 0.0157 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.2130 L22: 0.0242 REMARK 3 L33: 0.4185 L12: -0.0380 REMARK 3 L13: -0.2863 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: -0.0361 S13: 0.3031 REMARK 3 S21: 0.1100 S22: -0.0498 S23: 0.6104 REMARK 3 S31: -0.3059 S32: -0.5566 S33: 0.0387 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8717 32.5476 19.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.1109 REMARK 3 T33: 0.2273 T12: 0.0523 REMARK 3 T13: 0.0581 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.1956 L22: 0.4572 REMARK 3 L33: 2.5193 L12: -0.0771 REMARK 3 L13: -1.3785 L23: 0.5253 REMARK 3 S TENSOR REMARK 3 S11: 0.1751 S12: 0.3032 S13: 0.2062 REMARK 3 S21: 0.1505 S22: -0.0723 S23: 0.5639 REMARK 3 S31: -0.2399 S32: -0.9376 S33: 0.1583 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1204 20.1370 18.4163 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.4048 REMARK 3 T33: 0.2671 T12: 0.0341 REMARK 3 T13: 0.0412 T23: 0.1342 REMARK 3 L TENSOR REMARK 3 L11: 0.0459 L22: 2.5414 REMARK 3 L33: 0.1387 L12: -0.2899 REMARK 3 L13: 0.0564 L23: -0.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: 0.4580 S13: 0.0042 REMARK 3 S21: -0.7845 S22: -0.5625 S23: -0.7436 REMARK 3 S31: -0.0742 S32: 0.5685 S33: -0.6275 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 6.5, 25% (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.34150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.43050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.93950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.43050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.34150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.93950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 SER A 322 REMARK 465 A B -6 REMARK 465 A B -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 388 CD CE NZ REMARK 470 LYS A 396 CE NZ REMARK 470 LYS A 405 CE NZ REMARK 470 A B -4 P OP1 OP2 REMARK 470 A B -3 C8 N7 C5 C6 N6 N1 C2 REMARK 470 A B -3 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B -1 N3 A B -1 C4 -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B -1 C4 - N9 - C1' ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -116.21 50.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOW RELATED DB: PDB DBREF1 8EY8 A 323 410 UNP LARP1-3_HUMAN DBREF2 8EY8 A Q6PKG0-3 323 410 DBREF 8EY8 B -6 -1 PDB 8EY8 8EY8 -6 -1 SEQADV 8EY8 MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 8EY8 GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 8EY8 SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 6 A A A A G A FORMUL 3 HOH *62(H2 O) HELIX 1 AA1 GLN A 323 PHE A 338 1 16 HELIX 2 AA2 SER A 339 GLU A 344 1 6 HELIX 3 AA3 ASP A 346 LYS A 352 1 7 HELIX 4 AA4 ILE A 361 SER A 366 1 6 HELIX 5 AA5 PHE A 367 THR A 374 1 8 HELIX 6 AA6 ASP A 376 ASP A 386 1 11 HELIX 7 AA7 GLU A 402 TRP A 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N GLU A 391 O ARG A 398 CRYST1 36.683 45.879 58.861 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016989 0.00000