HEADER HYDROLASE/HYDROLASE INHIBITOR 26-OCT-22 8EYF TITLE PLASMODIUM FALCIPARUM M1 IN COMPLEX WITH INHIBITOR 15AA COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PFA-M1; COMPND 5 EC: 3.4.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MALARIA, METALLOAMINOPEPTIDASE, INHIBITOR COMPLEX, HYDROLASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.P.S.CALIC,S.MCGOWAN,C.T.WEBB REVDAT 3 25-OCT-23 8EYF 1 REMARK REVDAT 2 25-JAN-23 8EYF 1 JRNL REVDAT 1 18-JAN-23 8EYF 0 JRNL AUTH P.P.S.CALIC,N.B.VINH,C.T.WEBB,T.R.MALCOLM,A.NGO,K.LOWES, JRNL AUTH 2 N.DRINKWATER,S.MCGOWAN,P.J.SCAMMELLS JRNL TITL STRUCTURE-BASED DEVELOPMENT OF POTENT PLASMODIUM FALCIPARUM JRNL TITL 2 M1 AND M17 AMINOPEPTIDASE SELECTIVE AND DUAL INHIBITORS VIA JRNL TITL 3 S1'-REGION OPTIMISATION. JRNL REF EUR.J.MED.CHEM. V. 248 15051 2022 JRNL REFN ISSN 0223-5234 JRNL PMID 36634455 JRNL DOI 10.1016/J.EJMECH.2022.115051 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 149371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 7575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6400 - 5.9000 1.00 4709 291 0.1887 0.2080 REMARK 3 2 5.9000 - 4.6800 1.00 4734 254 0.1613 0.1798 REMARK 3 3 4.6800 - 4.0900 1.00 4779 225 0.1459 0.2132 REMARK 3 4 4.0900 - 3.7200 1.00 4729 250 0.1528 0.1824 REMARK 3 5 3.7200 - 3.4500 1.00 4758 258 0.1505 0.1814 REMARK 3 6 3.4500 - 3.2500 1.00 4770 224 0.1581 0.2159 REMARK 3 7 3.2500 - 3.0900 1.00 4776 230 0.1748 0.2083 REMARK 3 8 3.0900 - 2.9500 1.00 4705 274 0.1752 0.2165 REMARK 3 9 2.9500 - 2.8400 1.00 4755 252 0.1806 0.2555 REMARK 3 10 2.8400 - 2.7400 1.00 4705 258 0.1795 0.2425 REMARK 3 11 2.7400 - 2.6500 1.00 4781 250 0.1877 0.2417 REMARK 3 12 2.6500 - 2.5800 1.00 4744 250 0.1882 0.2068 REMARK 3 13 2.5800 - 2.5100 1.00 4671 278 0.1820 0.2495 REMARK 3 14 2.5100 - 2.4500 1.00 4783 265 0.1982 0.2702 REMARK 3 15 2.4500 - 2.3900 1.00 4805 228 0.1951 0.2382 REMARK 3 16 2.3900 - 2.3400 1.00 4675 254 0.2076 0.2609 REMARK 3 17 2.3400 - 2.3000 1.00 4794 235 0.2089 0.2955 REMARK 3 18 2.3000 - 2.2500 1.00 4729 252 0.2218 0.2644 REMARK 3 19 2.2500 - 2.2100 1.00 4772 215 0.2317 0.3246 REMARK 3 20 2.2100 - 2.1700 0.99 4680 278 0.2284 0.2763 REMARK 3 21 2.1700 - 2.1400 0.99 4744 247 0.2384 0.3169 REMARK 3 22 2.1400 - 2.1100 0.99 4642 289 0.2439 0.2931 REMARK 3 23 2.1100 - 2.0800 0.99 4730 263 0.2482 0.2846 REMARK 3 24 2.0800 - 2.0500 0.99 4629 274 0.2579 0.3079 REMARK 3 25 2.0500 - 2.0200 0.99 4746 249 0.2604 0.3045 REMARK 3 26 2.0200 - 1.9900 0.99 4695 237 0.2672 0.3105 REMARK 3 27 1.9900 - 1.9700 0.99 4712 253 0.2892 0.3442 REMARK 3 28 1.9700 - 1.9400 0.99 4668 246 0.2989 0.3493 REMARK 3 29 1.9400 - 1.9200 0.99 4678 275 0.3406 0.3711 REMARK 3 30 1.9200 - 1.9000 0.99 4698 221 0.3591 0.3917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7400 REMARK 3 ANGLE : 0.977 10020 REMARK 3 CHIRALITY : 0.056 1105 REMARK 3 PLANARITY : 0.007 1281 REMARK 3 DIHEDRAL : 8.705 1005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.5690 3.9660 10.0267 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1396 REMARK 3 T33: 0.1347 T12: 0.0123 REMARK 3 T13: -0.0045 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.5913 L22: 1.1148 REMARK 3 L33: 0.6122 L12: -0.2872 REMARK 3 L13: -0.0167 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: -0.0679 S13: 0.0381 REMARK 3 S21: 0.1169 S22: 0.0812 S23: -0.0097 REMARK 3 S31: -0.0774 S32: -0.0215 S33: 0.0189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% POLY(ETHYLENE GLYCOL) REMARK 280 (PEG)8000, 0.1 M TRIS PH 7.5-8.5, 0.2 M MGCL2, 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.19850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.77600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.19850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.77600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 194 REMARK 465 GLU A 195 REMARK 465 PRO A 196 REMARK 465 LEU A 1085 REMARK 465 HIS A 1086 REMARK 465 HIS A 1087 REMARK 465 HIS A 1088 REMARK 465 HIS A 1089 REMARK 465 HIS A 1090 REMARK 465 HIS A 1091 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 197 NZ REMARK 470 ILE A 198 CG1 CG2 CD1 REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 PRO A 206 CG CD REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 237 NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 LYS A 261 NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 VAL A 264 CB CG1 CG2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 THR A 270 OG1 CG2 REMARK 470 SER A 280 OG REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 SER A 286 CB OG REMARK 470 LYS A 287 CB CG CD CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 LYS A 349 CE NZ REMARK 470 PRO A 366 CB CG CD REMARK 470 LYS A 405 NZ REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 LYS A 431 NZ REMARK 470 LYS A 480 CE NZ REMARK 470 LEU A 546 CD1 REMARK 470 VAL A 569 CG1 CG2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 TYR A 598 OH REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 MET A 630 CE REMARK 470 ALA A 633 CB REMARK 470 ASN A 638 ND2 REMARK 470 ASN A 640 ND2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 LYS A 702 CG CD CE NZ REMARK 470 LYS A 727 NZ REMARK 470 GLN A 745 NE2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 PRO A 814 CG CD REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 834 CD1 REMARK 470 SER A 838 OG REMARK 470 LYS A 866 CE NZ REMARK 470 GLU A 872 OE1 REMARK 470 LYS A 874 NZ REMARK 470 LYS A 951 CG CD CE NZ REMARK 470 ARG A 969 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 LYS A 981 CE NZ REMARK 470 ASP A 989 CG OD1 OD2 REMARK 470 LYS A1016 NZ REMARK 470 LYS A1019 CD CE NZ REMARK 470 LYS A1027 CD CE NZ REMARK 470 MET A1034 CE REMARK 470 LYS A1048 CD CE NZ REMARK 470 THR A1051 CG2 REMARK 470 LYS A1052 CD CE NZ REMARK 470 GLN A1069 NE2 REMARK 470 ASN A1072 ND2 REMARK 470 LYS A1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1835 O HOH A 1930 2.02 REMARK 500 O HOH A 1712 O HOH A 1846 2.06 REMARK 500 O HOH A 1629 O HOH A 1967 2.09 REMARK 500 O HOH A 1270 O HOH A 1953 2.11 REMARK 500 O HOH A 1305 O HOH A 1645 2.15 REMARK 500 O HOH A 1255 O HOH A 1802 2.17 REMARK 500 O HOH A 1580 O HOH A 1698 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 723 OE1 GLU A 792 4445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 255 144.78 -176.86 REMARK 500 GLU A 274 -39.18 -138.40 REMARK 500 LYS A 311 -100.91 62.95 REMARK 500 VAL A 459 -149.11 -131.63 REMARK 500 GLU A 463 35.54 -89.37 REMARK 500 LEU A 475 -30.89 -130.58 REMARK 500 PHE A 736 70.23 53.40 REMARK 500 ASP A 974 31.12 -90.13 REMARK 500 VAL A 986 -57.40 -128.59 REMARK 500 LYS A 988 -133.74 45.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2043 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A2044 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2046 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2047 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2048 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2049 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2050 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2054 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A2055 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A2056 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A2058 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2059 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A2063 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A2065 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 9.74 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 10.06 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 10.14 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 10.63 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 10.98 ANGSTROMS REMARK 525 HOH A2074 DISTANCE = 11.41 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 11.93 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 12.01 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 15.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1112 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 98.6 REMARK 620 3 GLU A 519 OE1 103.5 89.9 REMARK 620 4 X4T A1102 O09 94.3 95.6 160.3 REMARK 620 5 X4T A1102 O10 105.4 155.6 88.6 78.6 REMARK 620 N 1 2 3 4 DBREF 8EYF A 195 1085 UNP O96935 AMP1_PLAFQ 195 1085 SEQADV 8EYF MET A 194 UNP O96935 INITIATING METHIONINE SEQADV 8EYF GLN A 213 UNP O96935 ASN 213 CONFLICT SEQADV 8EYF GLN A 223 UNP O96935 ASN 223 CONFLICT SEQADV 8EYF PRO A 378 UNP O96935 HIS 378 CONFLICT SEQADV 8EYF GLN A 501 UNP O96935 ASN 501 CONFLICT SEQADV 8EYF GLN A 745 UNP O96935 ASN 745 CONFLICT SEQADV 8EYF GLN A 795 UNP O96935 ASN 795 CONFLICT SEQADV 8EYF GLN A 1069 UNP O96935 ASN 1069 CONFLICT SEQADV 8EYF HIS A 1086 UNP O96935 EXPRESSION TAG SEQADV 8EYF HIS A 1087 UNP O96935 EXPRESSION TAG SEQADV 8EYF HIS A 1088 UNP O96935 EXPRESSION TAG SEQADV 8EYF HIS A 1089 UNP O96935 EXPRESSION TAG SEQADV 8EYF HIS A 1090 UNP O96935 EXPRESSION TAG SEQADV 8EYF HIS A 1091 UNP O96935 EXPRESSION TAG SEQRES 1 A 898 MET GLU PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SEQRES 2 A 898 SER GLY PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN SEQRES 3 A 898 ILE HIS ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP SEQRES 4 A 898 MET ASP ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL SEQRES 5 A 898 PHE ASP GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE SEQRES 6 A 898 ASN ASN LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR SEQRES 7 A 898 ASP ASN GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO SEQRES 8 A 898 LYS SER LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS SEQRES 9 A 898 PRO GLU THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER SEQRES 10 A 898 LYS ASN ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE SEQRES 11 A 898 ARG ARG ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET SEQRES 12 A 898 ALA LYS TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS SEQRES 13 A 898 TYR PRO VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU SEQRES 14 A 898 PHE GLU ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN SEQRES 15 A 898 ASP PRO PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL SEQRES 16 A 898 ALA GLY ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR SEQRES 17 A 898 LYS TYR THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER SEQRES 18 A 898 GLU GLU LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU SEQRES 19 A 898 CYS LEU LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE SEQRES 20 A 898 GLY LEU GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA SEQRES 21 A 898 VAL SER ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY SEQRES 22 A 898 LEU ASN ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS SEQRES 23 A 898 LYS ASN SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR SEQRES 24 A 898 VAL VAL GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN SEQRES 25 A 898 ARG VAL THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS SEQRES 26 A 898 GLU GLY LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU SEQRES 27 A 898 GLU MET THR LYS THR VAL THR THR ARG LEU SER HIS VAL SEQRES 28 A 898 ASP LEU LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER SEQRES 29 A 898 PRO LEU SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER SEQRES 30 A 898 MET GLU ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SEQRES 31 A 898 SER GLU VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU SEQRES 32 A 898 GLU TYR TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS SEQRES 33 A 898 ASN ASP GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR SEQRES 34 A 898 ALA MET GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SEQRES 35 A 898 SER ALA ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SEQRES 36 A 898 SER GLY THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP SEQRES 37 A 898 ALA GLU LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR SEQRES 38 A 898 THR LYS PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU SEQRES 39 A 898 PHE ILE PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN SEQRES 40 A 898 GLY LYS GLU MET ILE SER GLN THR THR LEU GLU LEU THR SEQRES 41 A 898 LYS GLU SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL SEQRES 42 A 898 LYS PRO ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO SEQRES 43 A 898 VAL TYR ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE SEQRES 44 A 898 LEU LEU LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR SEQRES 45 A 898 ASN SER CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET SEQRES 46 A 898 ASN TYR ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU SEQRES 47 A 898 GLU SER PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE SEQRES 48 A 898 ASP ALA ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP SEQRES 49 A 898 ALA GLY PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP SEQRES 50 A 898 ARG TYR ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP SEQRES 51 A 898 VAL LEU ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE SEQRES 52 A 898 GLY ASP LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SEQRES 53 A 898 SER LEU GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN SEQRES 54 A 898 ASP GLU SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG SEQRES 55 A 898 THR LEU ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA SEQRES 56 A 898 GLN TYR PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER SEQRES 57 A 898 LYS SER PRO TYR PRO SER ASN TRP LEU THR SER LEU SER SEQRES 58 A 898 VAL SER ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP SEQRES 59 A 898 LYS THR TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU SEQRES 60 A 898 GLN GLU TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS SEQRES 61 A 898 ASP ILE TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL SEQRES 62 A 898 LEU LYS ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL SEQRES 63 A 898 TYR LEU PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP SEQRES 64 A 898 ILE SER GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE SEQRES 65 A 898 THR LYS THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN SEQRES 66 A 898 LEU CYS GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR SEQRES 67 A 898 LYS ARG GLN GLU LEU MET LEU ASN GLU MET ASN THR MET SEQRES 68 A 898 LEU GLN GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR SEQRES 69 A 898 LEU LEU ARG LEU THR ASN LYS LEU HIS HIS HIS HIS HIS SEQRES 70 A 898 HIS HET GOL A1101 6 HET X4T A1102 23 HET DMS A1103 4 HET GOL A1104 6 HET GOL A1105 6 HET GOL A1106 6 HET GOL A1107 6 HET DMS A1108 4 HET GOL A1109 6 HET GOL A1110 6 HET GOL A1111 6 HET ZN A1112 1 HETNAM GOL GLYCEROL HETNAM X4T N-[(1R)-1-(4-BROMOPHENYL)-2-(HYDROXYAMINO)-2-OXOETHYL]- HETNAM 2 X4T N~2~-PHENYLGLYCINAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 8(C3 H8 O3) FORMUL 3 X4T C16 H16 BR N3 O3 FORMUL 4 DMS 2(C2 H6 O S) FORMUL 13 ZN ZN 2+ FORMUL 14 HOH *877(H2 O) HELIX 1 AA1 LYS A 202 TYR A 204 5 3 HELIX 2 AA2 SER A 280 VAL A 283 5 4 HELIX 3 AA3 HIS A 297 ASN A 301 5 5 HELIX 4 AA4 GLY A 322 ILE A 326 5 5 HELIX 5 AA5 PRO A 381 PHE A 385 5 5 HELIX 6 AA6 LYS A 417 LYS A 421 5 5 HELIX 7 AA7 LEU A 422 GLY A 441 1 20 HELIX 8 AA8 ASN A 473 LEU A 475 5 3 HELIX 9 AA9 ASP A 484 HIS A 500 1 17 HELIX 10 AB1 ASP A 511 PHE A 513 5 3 HELIX 11 AB2 GLN A 514 LYS A 535 1 22 HELIX 12 AB3 VAL A 537 SER A 557 1 21 HELIX 13 AB4 SER A 570 TYR A 575 5 6 HELIX 14 AB5 THR A 576 ASP A 611 1 36 HELIX 15 AB6 THR A 616 LYS A 632 1 17 HELIX 16 AB7 ASN A 640 TYR A 642 5 3 HELIX 17 AB8 LEU A 643 GLN A 648 1 6 HELIX 18 AB9 THR A 747 ASP A 758 1 12 HELIX 19 AC1 ASP A 760 GLU A 789 1 30 HELIX 20 AC2 ASN A 800 GLU A 812 1 13 HELIX 21 AC3 ASP A 817 VAL A 825 1 9 HELIX 22 AC4 GLN A 829 ILE A 834 1 6 HELIX 23 AC5 ASN A 835 VAL A 837 5 3 HELIX 24 AC6 ASP A 841 LEU A 871 1 31 HELIX 25 AC7 LEU A 871 ASP A 876 1 6 HELIX 26 AC8 ASP A 888 ALA A 908 1 21 HELIX 27 AC9 ASN A 912 LYS A 922 1 11 HELIX 28 AD1 TYR A 925 SER A 936 1 12 HELIX 29 AD2 ALA A 937 PHE A 939 5 3 HELIX 30 AD3 LYS A 941 LYS A 954 1 14 HELIX 31 AD4 ASP A 956 ARG A 969 1 14 HELIX 32 AD5 ASP A 974 VAL A 986 1 13 HELIX 33 AD6 ASN A 992 LEU A 1001 1 10 HELIX 34 AD7 PRO A 1002 ASN A 1005 5 4 HELIX 35 AD8 ASN A 1006 HIS A 1011 1 6 HELIX 36 AD9 GLY A 1015 LYS A 1030 1 16 HELIX 37 AE1 ASN A 1032 CYS A 1040 1 9 HELIX 38 AE2 GLU A 1041 LEU A 1049 5 9 HELIX 39 AE3 ASP A 1050 GLN A 1066 1 17 HELIX 40 AE4 SER A 1071 THR A 1082 1 12 SHEET 1 AA1 2 HIS A 199 TYR A 200 0 SHEET 2 AA1 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 AA2 7 LYS A 252 ILE A 258 0 SHEET 2 AA2 7 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 3 AA2 7 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 4 AA2 7 PHE A 209 ILE A 220 -1 N ASN A 217 O ARG A 228 SHEET 5 AA2 7 ALA A 337 ASP A 346 1 O THR A 342 N LEU A 216 SHEET 6 AA2 7 ARG A 369 LYS A 380 -1 O ASP A 376 N TYR A 339 SHEET 7 AA2 7 ASP A 358 ILE A 365 -1 N ASP A 358 O ASN A 375 SHEET 1 AA3 3 LEU A 244 ASP A 247 0 SHEET 2 AA3 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 AA3 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 AA4 4 GLY A 306 SER A 310 0 SHEET 2 AA4 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 AA4 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 AA4 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 AA5 5 LEU A 392 ILE A 400 0 SHEET 2 AA5 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 AA5 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 AA5 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 AA5 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 AA6 2 THR A 508 LEU A 509 0 SHEET 2 AA6 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 AA7 4 SER A 716 PHE A 721 0 SHEET 2 AA7 4 GLN A 666 TYR A 674 -1 N ILE A 669 O PHE A 719 SHEET 3 AA7 4 HIS A 653 ASP A 661 -1 N HIS A 653 O TYR A 674 SHEET 4 AA7 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 AA8 3 THR A 708 LEU A 712 0 SHEET 2 AA8 3 ILE A 689 ILE A 696 -1 N ILE A 689 O LEU A 712 SHEET 3 AA8 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK NE2 HIS A 496 ZN ZN A1112 1555 1555 2.20 LINK NE2 HIS A 500 ZN ZN A1112 1555 1555 2.19 LINK OE1 GLU A 519 ZN ZN A1112 1555 1555 2.08 LINK O09 X4T A1102 ZN ZN A1112 1555 1555 2.22 LINK O10 X4T A1102 ZN ZN A1112 1555 1555 2.14 CISPEP 1 GLU A 319 ALA A 320 0 2.68 CRYST1 75.721 109.552 118.397 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008446 0.00000