HEADER METAL BINDING PROTEIN 01-NOV-22 8EZW TITLE STRUCTURE OF APO ZRGA DELETION 124-184 FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: ZRGA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_2552; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC, ABC TRANSPORTER, SOLUTE BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.W.VALENCIA,E.T.YUKL REVDAT 2 25-OCT-23 8EZW 1 REMARK REVDAT 1 18-JAN-23 8EZW 0 JRNL AUTH D.W.VALENCIA,A.B.MELENDEZ,I.A.MELENDREZ,E.T.YUKL JRNL TITL STRUCTURE AND FUNCTION OF THE ZINC BINDING PROTEIN ZRGA FROM JRNL TITL 2 VIBRIO CHOLERAE. JRNL REF INT J MOL SCI V. 24 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36613986 JRNL DOI 10.3390/IJMS24010548 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 7.1.018 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 58640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3083 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06000 REMARK 3 B22 (A**2) : 1.55000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.744 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8EZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7AHW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 10 MG/ML WAS COMBINED AT A REMARK 280 1:1 RATIO WITH PRECIPITANT SOLUTION CONTAINING 0.2 M NACL, 0.1 M REMARK 280 BIS-TRIS PROPANE PH 5.5, 28% PEG 3350, BATCH MODE, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.72200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 SER A 25 REMARK 465 ASP A 26 REMARK 465 HIS A 27 REMARK 465 GLN A 28 REMARK 465 HIS A 29 REMARK 465 ARG A 30 REMARK 465 GLN A 31 REMARK 465 HIS A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 HIS A 35 REMARK 465 VAL A 36 REMARK 465 HIS A 37 REMARK 465 GLY A 38 REMARK 465 GLY A 112 REMARK 465 GLY A 113 REMARK 465 GLU A 114 REMARK 465 GLU A 115 REMARK 465 TYR A 116 REMARK 465 GLN A 117 REMARK 465 HIS A 118 REMARK 465 SER A 119 REMARK 465 HIS A 120 REMARK 465 ALA A 121 REMARK 465 TYR A 122 REMARK 465 ASP B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 SER B 25 REMARK 465 ASP B 26 REMARK 465 HIS B 27 REMARK 465 GLN B 28 REMARK 465 HIS B 29 REMARK 465 ARG B 30 REMARK 465 GLN B 31 REMARK 465 HIS B 32 REMARK 465 GLU B 33 REMARK 465 ALA B 34 REMARK 465 HIS B 35 REMARK 465 VAL B 36 REMARK 465 HIS B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 174 REMARK 465 GLU B 175 REMARK 465 GLU B 176 REMARK 465 TYR B 177 REMARK 465 GLN B 178 REMARK 465 HIS B 179 REMARK 465 SER B 180 REMARK 465 HIS B 181 REMARK 465 ALA B 182 REMARK 465 TYR B 183 REMARK 465 GLY B 184 REMARK 465 ASP C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 SER C 25 REMARK 465 ASP C 26 REMARK 465 HIS C 27 REMARK 465 GLN C 28 REMARK 465 HIS C 29 REMARK 465 ARG C 30 REMARK 465 GLN C 31 REMARK 465 HIS C 32 REMARK 465 GLU C 33 REMARK 465 ALA C 34 REMARK 465 HIS C 35 REMARK 465 VAL C 36 REMARK 465 HIS C 37 REMARK 465 GLY C 174 REMARK 465 GLU C 175 REMARK 465 GLU C 176 REMARK 465 TYR C 177 REMARK 465 GLN C 178 REMARK 465 HIS C 179 REMARK 465 SER C 180 REMARK 465 HIS C 181 REMARK 465 ALA C 182 REMARK 465 TYR C 183 REMARK 465 GLY C 184 REMARK 465 ASP D 22 REMARK 465 HIS D 23 REMARK 465 HIS D 24 REMARK 465 SER D 25 REMARK 465 ASP D 26 REMARK 465 HIS D 27 REMARK 465 GLN D 28 REMARK 465 HIS D 29 REMARK 465 ARG D 30 REMARK 465 GLN D 31 REMARK 465 HIS D 32 REMARK 465 GLU D 33 REMARK 465 ALA D 34 REMARK 465 HIS D 35 REMARK 465 VAL D 36 REMARK 465 HIS D 37 REMARK 465 GLY D 38 REMARK 465 TYR D 116 REMARK 465 GLN D 117 REMARK 465 HIS D 118 REMARK 465 SER D 119 REMARK 465 HIS D 120 REMARK 465 ASP E 22 REMARK 465 HIS E 23 REMARK 465 HIS E 24 REMARK 465 SER E 25 REMARK 465 ASP E 26 REMARK 465 HIS E 27 REMARK 465 GLN E 28 REMARK 465 HIS E 29 REMARK 465 ARG E 30 REMARK 465 GLN E 31 REMARK 465 HIS E 32 REMARK 465 GLU E 33 REMARK 465 ALA E 34 REMARK 465 HIS E 35 REMARK 465 VAL E 36 REMARK 465 HIS E 37 REMARK 465 GLY E 38 REMARK 465 GLY E 173 REMARK 465 GLY E 174 REMARK 465 GLU E 175 REMARK 465 GLU E 176 REMARK 465 TYR E 177 REMARK 465 GLN E 178 REMARK 465 HIS E 179 REMARK 465 SER E 180 REMARK 465 HIS E 181 REMARK 465 ALA E 182 REMARK 465 TYR E 183 REMARK 465 GLY E 184 REMARK 465 ASP F 22 REMARK 465 HIS F 23 REMARK 465 HIS F 24 REMARK 465 SER F 25 REMARK 465 ASP F 26 REMARK 465 HIS F 27 REMARK 465 GLN F 28 REMARK 465 HIS F 29 REMARK 465 ARG F 30 REMARK 465 GLN F 31 REMARK 465 HIS F 32 REMARK 465 GLU F 33 REMARK 465 ALA F 34 REMARK 465 HIS F 35 REMARK 465 VAL F 36 REMARK 465 HIS F 37 REMARK 465 GLY F 38 REMARK 465 GLY F 173 REMARK 465 GLY F 174 REMARK 465 GLU F 175 REMARK 465 GLU F 176 REMARK 465 TYR F 177 REMARK 465 GLN F 178 REMARK 465 HIS F 179 REMARK 465 SER F 180 REMARK 465 HIS F 181 REMARK 465 ALA F 182 REMARK 465 TYR F 183 REMARK 465 GLY F 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 95 O HOH B 301 1.65 REMARK 500 OE1 GLU D 89 O HOH D 301 2.09 REMARK 500 OE1 GLU B 66 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 189 C ALA A 189 O 0.115 REMARK 500 GLU B 79 CD GLU B 79 OE2 0.078 REMARK 500 GLU C 89 CD GLU C 89 OE1 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 62 -67.53 -100.49 REMARK 500 GLU A 225 -106.81 65.62 REMARK 500 VAL B 62 -66.40 -106.00 REMARK 500 SER B 95 120.44 -38.52 REMARK 500 ALA B 197 67.43 -119.68 REMARK 500 SER C 95 116.22 -34.09 REMARK 500 ALA C 197 64.45 -104.89 REMARK 500 SER C 229 145.37 -173.69 REMARK 500 VAL D 62 -64.64 -104.62 REMARK 500 GLU D 66 68.04 -117.08 REMARK 500 HIS D 67 164.55 173.32 REMARK 500 ALA D 93 105.57 -58.54 REMARK 500 SER D 95 128.74 -37.97 REMARK 500 LYS E 102 129.16 -37.97 REMARK 500 ALA F 68 142.83 -33.58 REMARK 500 HIS F 87 73.68 -114.40 REMARK 500 SER F 95 106.83 -29.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 226 GLN B 227 -146.23 REMARK 500 LYS F 97 ALA F 98 146.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 8EZW A 22 123 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW A 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 DBREF 8EZW B 22 184 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW B 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 DBREF 8EZW C 22 184 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW C 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 DBREF 8EZW D 22 123 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW D 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 DBREF 8EZW E 22 184 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW E 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 DBREF 8EZW F 22 184 UNP Q9KP27 Q9KP27_VIBCH 22 123 DBREF 8EZW F 185 242 UNP Q9KP27 Q9KP27_VIBCH 185 242 SEQRES 1 A 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 A 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 A 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 A 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 A 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 A 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 A 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 A 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 A 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 A 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 A 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 A 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 A 160 LEU ILE LYS LEU SEQRES 1 B 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 B 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 B 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 B 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 B 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 B 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 B 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 B 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 B 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 B 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 B 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 B 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 B 160 LEU ILE LYS LEU SEQRES 1 C 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 C 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 C 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 C 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 C 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 C 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 C 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 C 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 C 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 C 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 C 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 C 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 C 160 LEU ILE LYS LEU SEQRES 1 D 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 D 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 D 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 D 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 D 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 D 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 D 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 D 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 D 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 D 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 D 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 D 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 D 160 LEU ILE LYS LEU SEQRES 1 E 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 E 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 E 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 E 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 E 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 E 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 E 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 E 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 E 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 E 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 E 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 E 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 E 160 LEU ILE LYS LEU SEQRES 1 F 160 ASP HIS HIS SER ASP HIS GLN HIS ARG GLN HIS GLU ALA SEQRES 2 F 160 HIS VAL HIS GLY GLN VAL GLU LEU ASN ILE ALA GLN ASP SEQRES 3 F 160 GLY HIS ASP LEU LEU LEU GLU ILE THR ALA PRO GLY ALA SEQRES 4 F 160 ASP VAL VAL GLY PHE GLU HIS ALA PRO GLN ASP ASP ALA SEQRES 5 F 160 GLN LYS GLN ALA LEU GLU LYS ALA LEU GLU THR LEU HIS SEQRES 6 F 160 HIS PRO GLU LYS LEU PHE ALA LEU SER ASP LYS ALA GLN SEQRES 7 F 160 CYS GLU LYS ARG GLU VAL LEU ILE LYS HIS THR LEU GLY SEQRES 8 F 160 GLY GLU GLU TYR GLN HIS SER HIS ALA TYR GLY GLY SER SEQRES 9 F 160 PHE THR ALA GLN TYR GLN PHE HIS CYS GLU ALA VAL ASP SEQRES 10 F 160 GLN LEU LYS GLN ILE ASP THR GLN TRP PHE GLN TYR PHE SEQRES 11 F 160 PRO SER THR GLU LYS ILE GLN ALA ASN VAL LEU THR GLU SEQRES 12 F 160 LYS GLN GLN SER ALA LEU GLN LEU ASN ALA LYS GLN THR SEQRES 13 F 160 LEU ILE LYS LEU HET PGE E 301 10 HET PGE F 301 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 7 PGE 2(C6 H14 O4) FORMUL 9 HOH *362(H2 O) HELIX 1 AA1 GLY A 59 VAL A 63 1 5 HELIX 2 AA2 ASP A 71 HIS A 86 1 16 HELIX 3 AA3 HIS A 87 LEU A 91 1 5 HELIX 4 AA4 SER A 95 ALA A 98 5 4 HELIX 5 AA5 ALA A 197 LEU A 201 5 5 HELIX 6 AA6 GLN A 207 PHE A 212 1 6 HELIX 7 AA7 GLY B 59 VAL B 63 1 5 HELIX 8 AA8 ASP B 71 HIS B 86 1 16 HELIX 9 AA9 HIS B 87 LEU B 91 1 5 HELIX 10 AB1 ASP B 96 ALA B 98 5 3 HELIX 11 AB2 ALA B 197 LEU B 201 5 5 HELIX 12 AB3 GLN B 207 PHE B 212 1 6 HELIX 13 AB4 GLY C 59 GLY C 64 1 6 HELIX 14 AB5 ASP C 71 HIS C 86 1 16 HELIX 15 AB6 HIS C 87 LEU C 91 1 5 HELIX 16 AB7 ASP C 96 ALA C 98 5 3 HELIX 17 AB8 ALA C 197 LEU C 201 5 5 HELIX 18 AB9 GLN C 207 PHE C 212 1 6 HELIX 19 AC1 GLY D 59 GLY D 64 1 6 HELIX 20 AC2 ASP D 71 HIS D 86 1 16 HELIX 21 AC3 HIS D 87 LEU D 91 1 5 HELIX 22 AC4 SER D 95 ALA D 98 5 4 HELIX 23 AC5 ALA D 197 LEU D 201 5 5 HELIX 24 AC6 GLN D 207 PHE D 212 1 6 HELIX 25 AC7 GLY E 59 VAL E 63 1 5 HELIX 26 AC8 ASP E 71 HIS E 86 1 16 HELIX 27 AC9 HIS E 87 LEU E 91 1 5 HELIX 28 AD1 ASP E 96 ALA E 98 5 3 HELIX 29 AD2 ALA E 197 LEU E 201 5 5 HELIX 30 AD3 GLN E 207 PHE E 212 1 6 HELIX 31 AD4 GLY F 59 GLY F 64 1 6 HELIX 32 AD5 ASP F 71 HIS F 86 1 16 HELIX 33 AD6 HIS F 87 LEU F 91 1 5 HELIX 34 AD7 ALA F 197 LEU F 201 5 5 HELIX 35 AD8 GLN F 207 PHE F 212 1 6 SHEET 1 AA112 GLN A 227 LEU A 233 0 SHEET 2 AA112 ILE A 218 THR A 224 -1 N ALA A 220 O LEU A 231 SHEET 3 AA112 GLU A 41 ASP A 47 1 N ILE A 44 O ASN A 221 SHEET 4 AA112 ASP A 50 PRO A 58 -1 O GLU A 54 N ASN A 43 SHEET 5 AA112 SER A 186 CYS A 195 -1 O TYR A 191 N LEU A 53 SHEET 6 AA112 CYS A 100 THR A 110 -1 N GLU A 101 O HIS A 194 SHEET 7 AA112 CYS C 100 THR C 110 -1 O HIS C 109 N VAL A 105 SHEET 8 AA112 SER C 186 CYS C 195 -1 O GLN C 192 N ARG C 103 SHEET 9 AA112 ASP C 50 PRO C 58 -1 N LEU C 53 O TYR C 191 SHEET 10 AA112 VAL C 40 ASP C 47 -1 N ALA C 45 O LEU C 52 SHEET 11 AA112 ILE C 218 LEU C 223 1 O ASN C 221 N LEU C 42 SHEET 12 AA112 GLN C 228 LEU C 233 -1 O SER C 229 N VAL C 222 SHEET 1 AA2 3 PHE A 92 ALA A 93 0 SHEET 2 AA2 3 GLN A 203 THR A 206 -1 O ASP A 205 N ALA A 93 SHEET 3 AA2 3 LEU A 239 LYS A 241 -1 O ILE A 240 N ILE A 204 SHEET 1 AA3 6 CYS B 100 THR B 110 0 SHEET 2 AA3 6 SER B 186 CYS B 195 -1 O THR B 188 N LYS B 108 SHEET 3 AA3 6 ASP B 50 PRO B 58 -1 N LEU B 53 O TYR B 191 SHEET 4 AA3 6 VAL B 40 ASP B 47 -1 N ALA B 45 O LEU B 52 SHEET 5 AA3 6 ILE B 218 LEU B 223 1 O LEU B 223 N ILE B 44 SHEET 6 AA3 6 GLN B 228 LEU B 233 -1 O LEU B 231 N ALA B 220 SHEET 1 AA4 3 PHE B 92 LEU B 94 0 SHEET 2 AA4 3 GLN B 203 THR B 206 -1 O ASP B 205 N ALA B 93 SHEET 3 AA4 3 LEU B 239 LYS B 241 -1 O ILE B 240 N ILE B 204 SHEET 1 AA5 3 PHE C 92 LEU C 94 0 SHEET 2 AA5 3 GLN C 203 THR C 206 -1 O ASP C 205 N ALA C 93 SHEET 3 AA5 3 LEU C 239 LYS C 241 -1 O ILE C 240 N ILE C 204 SHEET 1 AA6 6 CYS D 100 THR D 110 0 SHEET 2 AA6 6 SER D 186 CYS D 195 -1 O HIS D 194 N GLU D 101 SHEET 3 AA6 6 ASP D 50 PRO D 58 -1 N LEU D 51 O PHE D 193 SHEET 4 AA6 6 GLU D 41 ASP D 47 -1 N ASN D 43 O GLU D 54 SHEET 5 AA6 6 ILE D 218 LEU D 223 1 O LEU D 223 N GLN D 46 SHEET 6 AA6 6 GLN D 228 LEU D 233 -1 O LEU D 233 N ILE D 218 SHEET 1 AA7 3 PHE D 92 ALA D 93 0 SHEET 2 AA7 3 GLN D 203 THR D 206 -1 O ASP D 205 N ALA D 93 SHEET 3 AA7 3 LEU D 239 LYS D 241 -1 O ILE D 240 N ILE D 204 SHEET 1 AA8 6 CYS E 100 THR E 110 0 SHEET 2 AA8 6 SER E 186 CYS E 195 -1 O THR E 188 N LYS E 108 SHEET 3 AA8 6 ASP E 50 PRO E 58 -1 N LEU E 53 O TYR E 191 SHEET 4 AA8 6 VAL E 40 ASP E 47 -1 N ALA E 45 O LEU E 52 SHEET 5 AA8 6 ILE E 218 LEU E 223 1 O ASN E 221 N ILE E 44 SHEET 6 AA8 6 GLN E 228 LEU E 233 -1 O LEU E 231 N ALA E 220 SHEET 1 AA9 3 PHE E 92 LEU E 94 0 SHEET 2 AA9 3 GLN E 203 THR E 206 -1 O ASP E 205 N ALA E 93 SHEET 3 AA9 3 LEU E 239 LYS E 241 -1 O ILE E 240 N ILE E 204 SHEET 1 AB1 6 CYS F 100 THR F 110 0 SHEET 2 AB1 6 SER F 186 CYS F 195 -1 O GLN F 192 N ARG F 103 SHEET 3 AB1 6 ASP F 50 PRO F 58 -1 N LEU F 53 O TYR F 191 SHEET 4 AB1 6 VAL F 40 ASP F 47 -1 N ALA F 45 O LEU F 52 SHEET 5 AB1 6 ILE F 218 LEU F 223 1 O ASN F 221 N ILE F 44 SHEET 6 AB1 6 ALA F 230 LEU F 233 -1 O LEU F 231 N ALA F 220 SHEET 1 AB2 3 PHE F 92 LEU F 94 0 SHEET 2 AB2 3 GLN F 203 THR F 206 -1 O ASP F 205 N ALA F 93 SHEET 3 AB2 3 LEU F 239 LYS F 241 -1 O ILE F 240 N ILE F 204 SSBOND 1 CYS A 100 CYS A 195 1555 1555 2.10 SSBOND 2 CYS B 100 CYS B 195 1555 1555 2.13 SSBOND 3 CYS C 100 CYS C 195 1555 1555 2.06 SSBOND 4 CYS D 100 CYS D 195 1555 1555 2.08 SSBOND 5 CYS E 100 CYS E 195 1555 1555 2.05 SSBOND 6 CYS F 100 CYS F 195 1555 1555 2.07 CRYST1 81.055 65.444 88.735 90.00 98.77 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012337 0.000000 0.001903 0.00000 SCALE2 0.000000 0.015280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011403 0.00000