HEADER LIPID BINDING PROTEIN 04-NOV-22 8F0V TITLE LIPOCALIN-LIKE MILK PROTEIN-2 - E38A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MILK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIPLOPTERA PUNCTATA; SOURCE 3 ORGANISM_COMMON: PACIFIC BEETLE COCKROACH; SOURCE 4 ORGANISM_TAXID: 6984; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS LIPOCALIN, MUTATION, COCKROACH MILK, LILI MIP., LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SUBRAMANIAN,D.KANAGAVIJAYAN REVDAT 1 23-AUG-23 8F0V 0 JRNL AUTH P.R.SANTHAKUMARI,K.DHANABALAN,S.VIRANI,A.S.HOPF-JANNASCH, JRNL AUTH 2 J.B.BENOIT,G.CHOPRA,R.SUBRAMANIAN JRNL TITL VARIABILITY IN PHENYLALANINE SIDE CHAIN CONFORMATIONS JRNL TITL 2 FACILITATES BROAD SUBSTRATE TOLERANCE OF FATTY ACID BINDING JRNL TITL 3 IN COCKROACH MILK PROTEINS. JRNL REF PLOS ONE V. 18 80009 2023 JRNL REFN ESSN 1932-6203 JRNL PMID 37384723 JRNL DOI 10.1371/JOURNAL.PONE.0280009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.KANAGAVIJAYAN,R.SUBRAMANIAN,P.R.SANTHAKUMARI,L.M.G.CHAVAS, REMARK 1 AUTH 2 R.SUBRAMANIAN,S.BANERJEE REMARK 1 TITL STRUCTURE OF RECOMBINANTLY EXPRESSED COCKROACH LILI-MIP REMARK 1 TITL 2 PROTEIN IN GLYCOSYLATED AND DEGLYCOSYLATED FORMS. REMARK 1 REF BIOCHIM BIOPHYS ACTA GEN V.1866 30064 2022 REMARK 1 REF 2 SUBJ REMARK 1 REFN ISSN 1872-8006 REMARK 1 DOI 10.1016/J.BBAGEN.2021.130064 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.BANERJEE,N.P.COUSSENS,F.X.GALLAT,N.SATHYANARAYANAN, REMARK 1 AUTH 2 J.SRIKANTH,K.J.YAGI,J.S.GRAY,S.S.TOBE,B.STAY,L.M.CHAVAS, REMARK 1 AUTH 3 S.RAMASWAMY REMARK 1 TITL STRUCTURE OF A HETEROGENEOUS, GLYCOSYLATED, LIPID-BOUND, IN REMARK 1 TITL 2 VIVO-GROWN PROTEIN CRYSTAL AT ATOMIC RESOLUTION FROM THE REMARK 1 TITL 3 VIVIPAROUS COCKROACH DIPLOPTERA PUNCTATA. REMARK 1 REF IUCRJ V. 3 282 2016 REMARK 1 REFN ESSN 2052-2525 REMARK 1 DOI 10.1107/S2052252516008903 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.023 REMARK 3 FREE R VALUE TEST SET COUNT : 323 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.64900 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -7.34900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.806 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.404 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.376 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.750 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1329 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1107 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1816 ; 1.361 ; 1.688 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2584 ; 0.432 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 7.458 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 5 ;16.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 180 ;17.414 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1493 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 270 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 290 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8 ; 0.093 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 639 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 38 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.033 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 619 ; 7.836 ;10.196 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 619 ; 7.835 ;10.197 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 772 ;12.306 ;15.255 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 773 ;12.298 ;15.254 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 710 ; 7.747 ;11.045 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 711 ; 7.742 ;11.051 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1044 ;11.967 ;16.321 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1045 ;11.962 ;16.325 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8F0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 2.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BKX REMARK 200 REMARK 200 REMARK: DIAMOND SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0 (0.002 M ZINC SULFATE HEPTAHYDRATE; REMARK 280 0.08 M HEPES PH 7.0; 25 % V/V JEFFAMINE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.16850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.17400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.16850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.17400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 206 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 95 CD CE NZ REMARK 470 LYS A 127 CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 23 HG SER A 119 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 137.72 -170.21 REMARK 500 PRO A 5 176.23 -56.38 REMARK 500 ASN A 8 -71.40 -137.39 REMARK 500 LEU A 9 -51.66 71.81 REMARK 500 GLN A 10 -112.21 69.29 REMARK 500 LEU A 11 -154.90 -172.28 REMARK 500 ASP A 53 115.09 -169.46 REMARK 500 LEU A 60 96.80 -63.71 REMARK 500 SER A 70 83.97 -168.24 REMARK 500 ASP A 80 -72.82 176.99 REMARK 500 SER A 86 163.71 179.90 REMARK 500 PRO A 105 -50.98 -29.08 REMARK 500 CYS A 137 37.60 77.78 REMARK 500 TYR A 140 -15.86 -46.68 REMARK 500 LEU A 154 44.61 -102.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.15 SIDE CHAIN REMARK 500 ARG A 128 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE2 66.2 REMARK 620 3 HIS A 43 ND1 101.9 166.7 REMARK 620 4 HIS A 103 NE2 137.6 101.2 83.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD1 REMARK 620 2 ASP A 53 OD2 57.1 REMARK 620 3 GLU A 61 OE2 90.5 110.1 REMARK 620 4 HIS A 63 NE2 73.3 130.2 72.4 REMARK 620 5 HOH A 302 O 156.2 113.9 113.1 109.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 150 NE2 REMARK 620 2 HIS A 150 NE2 0.0 REMARK 620 3 GLU A 155 OE2 121.4 121.4 REMARK 620 4 GLU A 155 OE2 121.4 121.4 0.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BKX RELATED DB: PDB REMARK 900 STRUCTURE WITHOUT MUTATION DBREF 8F0V A 1 155 UNP Q6SVB5 Q6SVB5_DIPPU 10 164 SEQADV 8F0V ALA A 38 UNP Q6SVB5 GLU 47 ENGINEERED MUTATION SEQRES 1 A 155 LYS GLU PRO CYS PRO PRO GLU ASN LEU GLN LEU THR PRO SEQRES 2 A 155 ARG ALA LEU VAL GLY LYS TRP TYR LEU ARG THR THR SER SEQRES 3 A 155 PRO ASP ILE PHE LYS GLN VAL SER ASN ILE THR ALA PHE SEQRES 4 A 155 TYR SER ALA HIS GLY ASN ASP TYR TYR GLY THR VAL THR SEQRES 5 A 155 ASP TYR SER PRO GLU TYR GLY LEU GLU ALA HIS ARG VAL SEQRES 6 A 155 ASN LEU THR VAL SER GLY ARG THR LEU LYS PHE TYR MET SEQRES 7 A 155 ASN ASP THR HIS GLU TYR ASP SER GLU TYR GLU ILE LEU SEQRES 8 A 155 ALA VAL ASP LYS ASP TYR PHE ILE PHE TYR GLY HIS PRO SEQRES 9 A 155 PRO ALA ALA PRO SER GLY LEU ALA LEU ILE HIS TYR ARG SEQRES 10 A 155 GLN SER CYS PRO LYS GLU ASP ILE ILE LYS ARG VAL LYS SEQRES 11 A 155 LYS SER LEU LYS ASN VAL CYS LEU ASP TYR LYS TYR PHE SEQRES 12 A 155 GLY ASN ASP THR SER VAL HIS CYS ARG TYR LEU GLU HET NAG A 201 28 HET NAG A 202 28 HET NAG A 203 28 HET ZN A 204 1 HET ZN A 205 1 HET ZN A 206 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *2(H2 O) HELIX 1 AA1 LYS A 122 ASN A 135 1 14 HELIX 2 AA2 CYS A 151 GLU A 155 5 5 SHEET 1 AA1 5 LEU A 60 GLU A 61 0 SHEET 2 AA1 5 TYR A 47 TYR A 54 -1 N ASP A 53 O GLU A 61 SHEET 3 AA1 5 SER A 34 SER A 41 -1 N SER A 41 O TYR A 48 SHEET 4 AA1 5 GLY A 18 SER A 26 -1 N GLY A 18 O TYR A 40 SHEET 5 AA1 5 GLY A 144 ASN A 145 -1 O GLY A 144 N THR A 25 SHEET 1 AA2 9 LEU A 60 GLU A 61 0 SHEET 2 AA2 9 TYR A 47 TYR A 54 -1 N ASP A 53 O GLU A 61 SHEET 3 AA2 9 ARG A 64 SER A 70 -1 O LEU A 67 N TYR A 47 SHEET 4 AA2 9 THR A 73 ASN A 79 -1 O TYR A 77 N ASN A 66 SHEET 5 AA2 9 SER A 86 VAL A 93 -1 O TYR A 88 N LEU A 74 SHEET 6 AA2 9 TYR A 97 GLY A 102 -1 O TYR A 101 N GLU A 89 SHEET 7 AA2 9 LEU A 111 TYR A 116 -1 O LEU A 111 N GLY A 102 SHEET 8 AA2 9 GLY A 18 SER A 26 -1 N TYR A 21 O TYR A 116 SHEET 9 AA2 9 GLY A 144 ASN A 145 -1 O GLY A 144 N THR A 25 SSBOND 1 CYS A 4 CYS A 137 1555 1555 2.05 SSBOND 2 CYS A 120 CYS A 151 1555 1555 2.08 LINK ND2 ASN A 35 C1 NAG A 202 1555 1555 1.46 LINK ND2 ASN A 66 C1 NAG A 203 1555 1555 1.45 LINK ND2 ASN A 145 C1 NAG A 201 1555 1555 1.47 LINK OE1 GLU A 2 ZN ZN A 205 1555 1555 2.03 LINK OE2 GLU A 2 ZN ZN A 205 1555 1555 2.03 LINK ND1 HIS A 43 ZN ZN A 205 1555 3645 2.12 LINK OD1 ASP A 53 ZN ZN A 204 1555 1555 2.51 LINK OD2 ASP A 53 ZN ZN A 204 1555 1555 2.01 LINK OE2 GLU A 61 ZN ZN A 204 1555 1555 2.02 LINK NE2 HIS A 63 ZN ZN A 204 1555 1555 2.32 LINK NE2 HIS A 103 ZN ZN A 205 1555 1555 1.90 LINK NE2 HIS A 150 ZN ZN A 206 1555 1555 2.03 LINK NE2 HIS A 150 ZN ZN A 206 1555 2555 2.03 LINK OE2 GLU A 155 ZN ZN A 206 1555 1555 2.10 LINK OE2 GLU A 155 ZN ZN A 206 1555 2555 2.11 LINK ZN ZN A 204 O HOH A 302 1555 1555 2.34 CISPEP 1 SER A 26 PRO A 27 0 4.83 CRYST1 39.771 52.337 136.348 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007334 0.00000