HEADER CHAPERONE, HYDROLASE 07-NOV-22 8F26 TITLE STRUCTURE OF A 60MER DEGP CAGE BOUND TO THE CLIENT PROTEIN HTRF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC SERINE ENDOPROTEASE DEGP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEASE AND PDZ1 DOMAINS (UNP RESIDUES 38-385); COMPND 5 SYNONYM: HEAT SHOCK PROTEIN DEGP,PROTEASE DO; COMPND 6 EC: 3.4.21.107; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PERIPLASMIC SERINE ENDOPROTEASE DEGP; COMPND 10 CHAIN: D; COMPND 11 FRAGMENT: PDZ2 DOMAIN (UNP RESIDUES 400-474); COMPND 12 SYNONYM: HEAT SHOCK PROTEIN DEGP,PROTEASE DO; COMPND 13 EC: 3.4.21.107; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: TELOMERIC REPEAT-BINDING FACTOR 1; COMPND 17 CHAIN: a; COMPND 18 FRAGMENT: UNP RESIDUES 404-430; COMPND 19 SYNONYM: NIMA-INTERACTING PROTEIN 2,TTAGGG REPEAT-BINDING FACTOR 1, COMPND 20 TELOMERIC PROTEIN PIN2/TRF1; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DEGP, HTRA, PTD, B0161, JW0157; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K12; SOURCE 12 GENE: DEGP, HTRA, PTD, B0161, JW0157; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: TERF1, PIN2, TRBF1, TRF, TRF1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, CHAPERONE, HYDROLASE, CAGE, COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR R.W.HARKNESS,Z.A.RIPSTEIN,J.M.DI TRANI,L.E.KAY REVDAT 3 05-JUL-23 8F26 1 JRNL REVDAT 2 21-JUN-23 8F26 1 JRNL REVDAT 1 23-NOV-22 8F26 0 JRNL AUTH R.W.HARKNESS,Z.A.RIPSTEIN,J.M.DI TRANI,L.E.KAY JRNL TITL FLEXIBLE CLIENT-DEPENDENT CAGES IN THE ASSEMBLY LANDSCAPE OF JRNL TITL 2 THE PERIPLASMIC PROTEASE-CHAPERONE DEGP. JRNL REF J.AM.CHEM.SOC. V. 145 13015 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37282495 JRNL DOI 10.1021/JACS.2C11849 REMARK 2 REMARK 2 RESOLUTION. 9.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.700 REMARK 3 NUMBER OF PARTICLES : 14443 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8F26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269882. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STRUCTURE OF A 60MER DEGP CAGE REMARK 245 BOUND TO THE CLIENT PROTEIN REMARK 245 HTRF1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 0.809017 0.500000 -167.70971 REMARK 350 BIOMT2 2 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT3 2 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT1 3 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT2 3 -0.500000 -0.309017 -0.809017 710.42970 REMARK 350 BIOMT3 3 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT1 4 -0.809017 -0.500000 -0.309017 710.42970 REMARK 350 BIOMT2 4 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT3 4 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT1 5 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT2 5 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 710.42971 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT1 7 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT2 7 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT3 7 0.500000 0.309017 0.809017 -167.70971 REMARK 350 BIOMT1 8 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT2 8 0.809017 0.500000 0.309017 -167.70970 REMARK 350 BIOMT3 8 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT1 9 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 9 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 -1.000000 0.000000 0.000000 542.72000 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 710.42971 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -167.70971 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT2 13 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 14 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 542.72000 REMARK 350 BIOMT3 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT2 15 -0.309017 -0.809017 -0.500000 710.42970 REMARK 350 BIOMT3 15 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 710.42971 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT1 17 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT3 17 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT1 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT1 19 0.309017 0.809017 0.500000 -167.70970 REMARK 350 BIOMT2 19 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT3 19 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT1 20 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT2 20 0.500000 0.309017 0.809017 -167.70970 REMARK 350 BIOMT3 20 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT1 21 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT2 21 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT3 21 -0.809017 -0.500000 -0.309017 710.42971 REMARK 350 BIOMT1 22 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT2 22 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT1 23 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT2 24 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT3 24 0.309017 0.809017 0.500000 -167.70970 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -167.70970 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT1 26 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT2 26 -0.500000 -0.309017 -0.809017 710.42971 REMARK 350 BIOMT3 26 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT1 27 0.809017 0.500000 0.309017 -167.70971 REMARK 350 BIOMT2 27 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT3 27 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT1 29 -1.000000 0.000000 0.000000 542.72000 REMARK 350 BIOMT2 29 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT1 30 -0.309017 -0.809017 -0.500000 710.42970 REMARK 350 BIOMT2 30 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT3 30 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT1 31 -0.309017 -0.809017 -0.500000 710.42971 REMARK 350 BIOMT2 31 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT3 31 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT1 32 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT2 32 0.500000 0.309017 0.809017 -167.70971 REMARK 350 BIOMT3 32 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT1 33 0.809017 0.500000 0.309017 -167.70970 REMARK 350 BIOMT2 33 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT3 33 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT1 34 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 34 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT3 34 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -1.000000 0.000000 0.000000 542.72000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT2 37 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -167.70971 REMARK 350 BIOMT1 38 -0.500000 -0.309017 -0.809017 710.42970 REMARK 350 BIOMT2 38 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT3 38 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT1 39 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT2 39 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT3 39 -0.809017 -0.500000 -0.309017 710.42970 REMARK 350 BIOMT1 40 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 40 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 40 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT1 41 -0.500000 -0.309017 -0.809017 710.42971 REMARK 350 BIOMT2 41 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT3 41 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT1 42 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT2 42 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT3 42 0.809017 0.500000 0.309017 -167.70971 REMARK 350 BIOMT1 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT3 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 44 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT3 44 -1.000000 0.000000 0.000000 542.72000 REMARK 350 BIOMT1 45 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT2 45 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 710.42970 REMARK 350 BIOMT1 46 -0.309017 0.809017 -0.500000 271.36000 REMARK 350 BIOMT2 46 -0.809017 -0.500000 -0.309017 710.42971 REMARK 350 BIOMT3 46 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT1 47 -0.500000 0.309017 -0.809017 542.72000 REMARK 350 BIOMT2 47 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT1 48 0.000000 0.000000 -1.000000 542.72000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 271.36000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -167.70970 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT1 50 0.309017 0.809017 -0.500000 103.65030 REMARK 350 BIOMT2 50 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT3 50 0.500000 0.309017 0.809017 -167.70970 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT2 52 0.309017 0.809017 0.500000 -167.70971 REMARK 350 BIOMT3 52 -0.809017 0.500000 -0.309017 439.06970 REMARK 350 BIOMT1 53 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT2 53 -0.809017 0.500000 0.309017 271.36000 REMARK 350 BIOMT3 53 -0.500000 -0.309017 -0.809017 710.42970 REMARK 350 BIOMT1 54 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT2 54 -0.809017 -0.500000 -0.309017 710.42970 REMARK 350 BIOMT3 54 0.500000 -0.309017 -0.809017 439.06970 REMARK 350 BIOMT1 55 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 55 0.309017 -0.809017 -0.500000 542.72000 REMARK 350 BIOMT3 55 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 56 0.809017 -0.500000 0.309017 103.65030 REMARK 350 BIOMT2 56 -0.500000 -0.309017 0.809017 271.36000 REMARK 350 BIOMT3 56 -0.309017 -0.809017 -0.500000 710.42971 REMARK 350 BIOMT1 57 0.500000 0.309017 0.809017 -167.70971 REMARK 350 BIOMT2 57 -0.309017 -0.809017 0.500000 439.06970 REMARK 350 BIOMT3 57 0.809017 -0.500000 -0.309017 271.36000 REMARK 350 BIOMT1 58 -0.500000 0.309017 0.809017 103.65030 REMARK 350 BIOMT2 58 0.309017 -0.809017 0.500000 271.36000 REMARK 350 BIOMT3 58 0.809017 0.500000 0.309017 -167.70970 REMARK 350 BIOMT1 59 -0.809017 -0.500000 0.309017 542.72000 REMARK 350 BIOMT2 59 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 59 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 60 0.000000 -1.000000 0.000000 542.72000 REMARK 350 BIOMT2 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 60 -1.000000 0.000000 0.000000 542.72000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 36 REMARK 465 VAL A 37 REMARK 465 ASN A 38 REMARK 465 THR A 39 REMARK 465 PRO A 40 REMARK 465 ARG A 41 REMARK 465 MET A 42 REMARK 465 PRO A 43 REMARK 465 ARG A 44 REMARK 465 ASN A 45 REMARK 465 PHE A 46 REMARK 465 GLN A 47 REMARK 465 GLN A 48 REMARK 465 PHE A 49 REMARK 465 PHE A 50 REMARK 465 GLY A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 PHE A 56 REMARK 465 CYS A 57 REMARK 465 GLN A 58 REMARK 465 GLU A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 PRO A 62 REMARK 465 PHE A 63 REMARK 465 GLN A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 PRO A 67 REMARK 465 PHE A 68 REMARK 465 CYS A 69 REMARK 465 GLN A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 GLN A 73 REMARK 465 GLY A 74 REMARK 465 GLY A 75 REMARK 465 ASN A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 GLN A 80 REMARK 465 GLN A 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER a 28 OG REMARK 470 ASN a 37 CG OD1 ND2 REMARK 470 ARG a 39 CG CD NE CZ NH1 NH2 REMARK 470 THR a 40 OG1 CG2 REMARK 470 SER a 41 OG REMARK 470 VAL a 42 CG1 CG2 REMARK 470 MET a 43 CG SD CE REMARK 470 LEU a 44 CG CD1 CD2 REMARK 470 LYS a 45 CG CD CE NZ REMARK 470 ASP a 46 CG OD1 OD2 REMARK 470 ARG a 47 CG CD NE CZ NH1 NH2 REMARK 470 ARG a 49 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 101 CB VAL A 101 CG2 -0.163 REMARK 500 PRO A 170 CD PRO A 170 N -0.098 REMARK 500 GLU A 175 CG GLU A 175 CD -0.132 REMARK 500 GLU A 175 CD GLU A 175 OE2 -0.080 REMARK 500 SER A 183 CB SER A 183 OG -0.079 REMARK 500 TYR A 195 CG TYR A 195 CD1 -0.081 REMARK 500 TYR A 195 CZ TYR A 195 CE2 -0.088 REMARK 500 ILE A 205 CB ILE A 205 CG2 -0.198 REMARK 500 TYR D 444 CG TYR D 444 CD1 -0.083 REMARK 500 LEU a 32 CB LEU a 32 CG -0.193 REMARK 500 HIS a 33 CB HIS a 33 CG -0.152 REMARK 500 TYR a 34 CB TYR a 34 CG -0.124 REMARK 500 PHE a 36 CB PHE a 36 CG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 262 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 438 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 171 16.21 53.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28808 RELATED DB: EMDB REMARK 900 STRUCTURE OF A 60MER DEGP CAGE BOUND TO THE CLIENT PROTEIN HTRF1 DBREF 8F26 A 12 359 UNP P0C0V0 DEGP_ECOLI 38 385 DBREF 8F26 D 374 448 UNP P0C0V0 DEGP_ECOLI 400 474 DBREF 8F26 a 28 54 UNP P54274 TERF1_HUMAN 404 430 SEQADV 8F26 ALA A 210 UNP P0C0V0 SER 236 CONFLICT SEQRES 1 A 348 MET PRO SER LEU ALA PRO MET LEU GLU LYS VAL MET PRO SEQRES 2 A 348 SER VAL VAL SER ILE ASN VAL GLU GLY SER THR THR VAL SEQRES 3 A 348 ASN THR PRO ARG MET PRO ARG ASN PHE GLN GLN PHE PHE SEQRES 4 A 348 GLY ASP ASP SER PRO PHE CYS GLN GLU GLY SER PRO PHE SEQRES 5 A 348 GLN SER SER PRO PHE CYS GLN GLY GLY GLN GLY GLY ASN SEQRES 6 A 348 GLY GLY GLY GLN GLN GLN LYS PHE MET ALA LEU GLY SER SEQRES 7 A 348 GLY VAL ILE ILE ASP ALA ASP LYS GLY TYR VAL VAL THR SEQRES 8 A 348 ASN ASN HIS VAL VAL ASP ASN ALA THR VAL ILE LYS VAL SEQRES 9 A 348 GLN LEU SER ASP GLY ARG LYS PHE ASP ALA LYS MET VAL SEQRES 10 A 348 GLY LYS ASP PRO ARG SER ASP ILE ALA LEU ILE GLN ILE SEQRES 11 A 348 GLN ASN PRO LYS ASN LEU THR ALA ILE LYS MET ALA ASP SEQRES 12 A 348 SER ASP ALA LEU ARG VAL GLY ASP TYR THR VAL ALA ILE SEQRES 13 A 348 GLY ASN PRO PHE GLY LEU GLY GLU THR VAL THR SER GLY SEQRES 14 A 348 ILE VAL SER ALA LEU GLY ARG SER GLY LEU ASN ALA GLU SEQRES 15 A 348 ASN TYR GLU ASN PHE ILE GLN THR ASP ALA ALA ILE ASN SEQRES 16 A 348 ARG GLY ASN ALA GLY GLY ALA LEU VAL ASN LEU ASN GLY SEQRES 17 A 348 GLU LEU ILE GLY ILE ASN THR ALA ILE LEU ALA PRO ASP SEQRES 18 A 348 GLY GLY ASN ILE GLY ILE GLY PHE ALA ILE PRO SER ASN SEQRES 19 A 348 MET VAL LYS ASN LEU THR SER GLN MET VAL GLU TYR GLY SEQRES 20 A 348 GLN VAL LYS ARG GLY GLU LEU GLY ILE MET GLY THR GLU SEQRES 21 A 348 LEU ASN SER GLU LEU ALA LYS ALA MET LYS VAL ASP ALA SEQRES 22 A 348 GLN ARG GLY ALA PHE VAL SER GLN VAL LEU PRO ASN SER SEQRES 23 A 348 SER ALA ALA LYS ALA GLY ILE LYS ALA GLY ASP VAL ILE SEQRES 24 A 348 THR SER LEU ASN GLY LYS PRO ILE SER SER PHE ALA ALA SEQRES 25 A 348 LEU ARG ALA GLN VAL GLY THR MET PRO VAL GLY SER LYS SEQRES 26 A 348 LEU THR LEU GLY LEU LEU ARG ASP GLY LYS GLN VAL ASN SEQRES 27 A 348 VAL ASN LEU GLU LEU GLN GLN SER SER GLN SEQRES 1 D 75 ALA GLU MET SER ASN LYS GLY LYS ASP GLN GLY VAL VAL SEQRES 2 D 75 VAL ASN ASN VAL LYS THR GLY THR PRO ALA ALA GLN ILE SEQRES 3 D 75 GLY LEU LYS LYS GLY ASP VAL ILE ILE GLY ALA ASN GLN SEQRES 4 D 75 GLN ALA VAL LYS ASN ILE ALA GLU LEU ARG LYS VAL LEU SEQRES 5 D 75 ASP SER LYS PRO SER VAL LEU ALA LEU ASN ILE GLN ARG SEQRES 6 D 75 GLY ASP SER THR ILE TYR LEU LEU MET GLN SEQRES 1 a 27 SER LYS ILE LEU LEU HIS TYR LYS PHE ASN ASN ARG THR SEQRES 2 a 27 SER VAL MET LEU LYS ASP ARG TRP ARG THR MET LYS LYS SEQRES 3 a 27 LEU HELIX 1 AA1 LEU A 15 GLU A 20 1 6 HELIX 2 AA2 LYS A 21 PRO A 24 5 4 HELIX 3 AA3 ASN A 104 ASP A 108 1 5 HELIX 4 AA4 ASP A 154 LEU A 158 5 5 HELIX 5 AA5 ASN A 169 LEU A 173 5 5 HELIX 6 AA6 SER A 244 GLY A 258 1 15 HELIX 7 AA7 ASN A 273 MET A 280 1 8 HELIX 8 AA8 SER A 297 GLY A 303 1 7 HELIX 9 AA9 SER A 320 GLY A 329 1 10 HELIX 10 AB1 THR D 394 ILE D 399 1 6 HELIX 11 AB2 ASN D 417 ASP D 426 1 10 HELIX 12 AB3 ASN a 37 ARG a 49 1 13 SHEET 1 AA1 8 TYR a 34 PHE a 36 0 SHEET 2 AA1 8 PHE A 84 ASP A 94 -1 N LEU A 87 O TYR a 34 SHEET 3 AA1 8 TYR A 99 ASN A 103 -1 O TYR A 99 N ILE A 93 SHEET 4 AA1 8 ILE A 136 ILE A 141 -1 O ILE A 139 N VAL A 100 SHEET 5 AA1 8 LYS A 122 LYS A 130 -1 N LYS A 126 O GLN A 140 SHEET 6 AA1 8 ALA A 110 GLN A 116 -1 N VAL A 115 O PHE A 123 SHEET 7 AA1 8 VAL A 26 GLY A 33 -1 N GLU A 32 O THR A 111 SHEET 8 AA1 8 PHE A 84 ASP A 94 -1 O ALA A 86 N VAL A 31 SHEET 1 AA2 8 LYS a 29 LEU a 31 0 SHEET 2 AA2 8 LEU A 221 LEU A 229 -1 N ILE A 228 O ILE a 30 SHEET 3 AA2 8 GLY A 239 PRO A 243 -1 O PHE A 240 N ALA A 227 SHEET 4 AA2 8 PHE A 198 THR A 201 -1 N THR A 201 O GLY A 239 SHEET 5 AA2 8 THR A 176 ARG A 187 -1 N ARG A 187 O PHE A 198 SHEET 6 AA2 8 TYR A 163 GLY A 168 -1 N THR A 164 O GLY A 180 SHEET 7 AA2 8 ALA A 213 VAL A 215 -1 O ALA A 213 N ILE A 167 SHEET 8 AA2 8 LEU A 221 LEU A 229 -1 O ILE A 222 N LEU A 214 SHEET 1 AA3 2 GLY A 263 GLU A 264 0 SHEET 2 AA3 2 GLN A 355 GLN A 356 -1 O GLN A 355 N GLU A 264 SHEET 1 AA4 4 ILE A 267 GLU A 271 0 SHEET 2 AA4 4 ALA A 288 VAL A 293 -1 O PHE A 289 N THR A 270 SHEET 3 AA4 4 VAL A 309 LEU A 313 -1 O ILE A 310 N ALA A 288 SHEET 4 AA4 4 LYS A 316 PRO A 317 -1 O LYS A 316 N LEU A 313 SHEET 1 AA5 5 ILE A 267 GLU A 271 0 SHEET 2 AA5 5 ALA A 288 VAL A 293 -1 O PHE A 289 N THR A 270 SHEET 3 AA5 5 VAL A 309 LEU A 313 -1 O ILE A 310 N ALA A 288 SHEET 4 AA5 5 LYS A 336 ARG A 343 -1 O GLY A 340 N THR A 311 SHEET 5 AA5 5 LYS A 346 GLU A 353 -1 O VAL A 348 N LEU A 341 SHEET 1 AA6 4 GLU D 375 ASN D 378 0 SHEET 2 AA6 4 VAL D 385 ASN D 389 -1 O VAL D 386 N SER D 377 SHEET 3 AA6 4 VAL D 406 ALA D 410 -1 O ILE D 407 N VAL D 385 SHEET 4 AA6 4 GLN D 413 ALA D 414 -1 O GLN D 413 N ALA D 410 SHEET 1 AA7 5 GLU D 375 ASN D 378 0 SHEET 2 AA7 5 VAL D 385 ASN D 389 -1 O VAL D 386 N SER D 377 SHEET 3 AA7 5 VAL D 406 ALA D 410 -1 O ILE D 407 N VAL D 385 SHEET 4 AA7 5 LEU D 432 ARG D 438 -1 O ASN D 435 N ILE D 408 SHEET 5 AA7 5 SER D 441 MET D 447 -1 O MET D 447 N LEU D 432 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000