HEADER ANTIBIOTIC 10-NOV-22 8F3I TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 5 (PBP5) S466 TITLE 2 INSERTION VARIANT PENICILLIN BOUND FORM FROM ENTEROCOCCUS FAECIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN PBP5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 GENE: PBP5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN BINDING, ANTIBIOTIC RESISTANCE, ANTIBIOTICS, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR E.D.D'ANDREA,M.S.CHOY,M.V.SCHOENLE,R.PAGE,W.PETI REVDAT 4 09-OCT-24 8F3I 1 REMARK REVDAT 3 13-MAR-24 8F3I 1 SOURCE REVDAT 2 25-OCT-23 8F3I 1 REMARK REVDAT 1 05-JUL-23 8F3I 0 JRNL AUTH Y.HUNASHAL,G.S.KUMAR,M.S.CHOY,A.DA SILVA SANTIAGO, JRNL AUTH 2 E.D.D'ANDREA,M.V.SCHOENLE,M.ARTHUR,L.B.RICE,R.PAGE,W.PETI JRNL TITL THE MOLECULAR BASIS FOR RESISTANCE OF E. FAECIUM PBP5 TO JRNL TITL 2 BETA-LACTAM ANTIBIOTICS JRNL REF NAT COMMUN 2023 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1-4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9000 - 8.5600 0.99 2624 130 0.1641 0.1817 REMARK 3 2 8.5600 - 6.8100 0.99 2658 119 0.1744 0.1954 REMARK 3 3 6.8100 - 5.9500 1.00 2672 107 0.1786 0.2215 REMARK 3 4 5.9500 - 5.4100 1.00 2655 131 0.1710 0.1811 REMARK 3 5 5.4100 - 5.0200 0.99 2566 172 0.1505 0.1525 REMARK 3 6 5.0200 - 4.7300 1.00 2652 141 0.1414 0.1310 REMARK 3 7 4.7300 - 4.4900 1.00 2671 110 0.1387 0.1623 REMARK 3 8 4.4900 - 4.3000 1.00 2633 140 0.1358 0.1502 REMARK 3 9 4.2900 - 4.1300 1.00 2617 154 0.1412 0.1643 REMARK 3 10 4.1300 - 3.9900 1.00 2677 118 0.1503 0.2064 REMARK 3 11 3.9900 - 3.8600 1.00 2637 124 0.1644 0.1741 REMARK 3 12 3.8600 - 3.7500 1.00 2678 114 0.1608 0.1648 REMARK 3 13 3.7500 - 3.6500 1.00 2610 142 0.1658 0.2006 REMARK 3 14 3.6500 - 3.5600 1.00 2667 129 0.1871 0.2080 REMARK 3 15 3.5600 - 3.4800 1.00 2646 137 0.2063 0.2185 REMARK 3 16 3.4800 - 3.4100 1.00 2626 150 0.2052 0.2308 REMARK 3 17 3.4100 - 3.3400 1.00 2667 108 0.2169 0.2805 REMARK 3 18 3.3400 - 3.2800 1.00 2656 124 0.2255 0.2602 REMARK 3 19 3.2800 - 3.2200 1.00 2608 150 0.2236 0.2533 REMARK 3 20 3.2200 - 3.1700 0.99 2630 144 0.2577 0.3056 REMARK 3 21 3.1700 - 3.1100 1.00 2628 147 0.2510 0.3189 REMARK 3 22 3.1100 - 3.0700 1.00 2609 178 0.2603 0.2604 REMARK 3 23 3.0700 - 3.0200 1.00 2592 162 0.2756 0.3269 REMARK 3 24 3.0200 - 2.9800 1.00 2647 140 0.2970 0.3050 REMARK 3 25 2.9800 - 2.9400 1.00 2656 124 0.3022 0.3813 REMARK 3 26 2.9400 - 2.9000 1.00 2673 136 0.2800 0.3103 REMARK 3 27 2.9000 - 2.8600 1.00 2586 159 0.2932 0.3286 REMARK 3 28 2.8600 - 2.8300 1.00 2606 175 0.3032 0.3616 REMARK 3 29 2.8300 - 2.8000 0.96 2573 128 0.3144 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4961 REMARK 3 ANGLE : 0.439 6753 REMARK 3 CHIRALITY : 0.041 760 REMARK 3 PLANARITY : 0.003 870 REMARK 3 DIHEDRAL : 12.251 1752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 1.04900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 6MKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 5.0, 3.0 AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.80150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.80150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.80150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.80150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.80150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.80150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 923 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 944 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 GLN A 37 REMARK 465 GLU A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 142 CG OD1 OD2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 LEU A 219 CG CD1 CD2 REMARK 470 THR A 220 OG1 CG2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASP A 261 CG OD1 OD2 REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 ASP A 628 CG OD1 OD2 REMARK 470 VAL A 629 CG1 CG2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 ASP A 659 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 836 O HOH A 914 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -130.09 -139.09 REMARK 500 ASP A 107 -167.11 -123.93 REMARK 500 ASP A 142 -128.20 59.06 REMARK 500 ASP A 202 19.48 -144.35 REMARK 500 LEU A 241 -78.00 -120.92 REMARK 500 PRO A 249 -167.47 -76.34 REMARK 500 PRO A 252 -172.60 -69.37 REMARK 500 ALA A 271 26.14 -140.63 REMARK 500 GLN A 408 81.69 57.82 REMARK 500 ASP A 454 -169.10 -160.94 REMARK 500 PHE A 504 -148.76 -89.26 REMARK 500 PRO A 513 41.78 -77.94 REMARK 500 GLN A 540 -131.61 -106.74 REMARK 500 ASN A 559 28.02 -142.58 REMARK 500 LYS A 626 28.09 -77.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8F3F RELATED DB: PDB REMARK 900 SAME PROTEIN BUT DIFFFERENT MUTATION DBREF 8F3I A 37 678 UNP G5CKR9 G5CKR9_ENTFC 37 678 SEQADV 8F3I GLY A 34 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3I HIS A 35 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3I MET A 36 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3I SER A 466 UNP G5CKR9 INSERTION SEQADV 8F3I VAL A 586 UNP G5CKR9 LEU 586 CONFLICT SEQRES 1 A 646 GLY HIS MET GLN GLU THR GLN ALA VAL GLU ALA GLY GLU SEQRES 2 A 646 LYS THR VAL GLU GLN PHE VAL GLN ALA LEU ASN LYS GLY SEQRES 3 A 646 ASP TYR ASN LYS ALA ALA GLU MET THR SER LYS LYS ALA SEQRES 4 A 646 ALA ASN LYS SER ALA LEU SER GLU LYS GLU ILE LEU ASP SEQRES 5 A 646 LYS TYR GLN ASN ILE TYR GLY ALA ALA ASP VAL LYS GLY SEQRES 6 A 646 LEU GLN ILE SER ASN LEU LYS VAL ASP LYS LYS ASP ASP SEQRES 7 A 646 SER THR TYR SER PHE SER TYR LYS ALA LYS MET ASN THR SEQRES 8 A 646 SER LEU GLY GLU LEU LYS ASP LEU SER TYR LYS GLY THR SEQRES 9 A 646 LEU ASP ARG ASN ASP GLY GLN THR THR ILE ASN TRP GLN SEQRES 10 A 646 PRO ASN LEU VAL PHE PRO GLU MET GLU GLY ASN ASP LYS SEQRES 11 A 646 VAL SER LEU THR THR GLN GLU ALA ALA ARG GLY ASN ILE SEQRES 12 A 646 ILE ASP ARG ASN GLY GLU PRO LEU ALA THR THR GLY LYS SEQRES 13 A 646 LEU LYS GLN LEU GLY VAL VAL PRO SER LYS LEU GLY ASP SEQRES 14 A 646 GLY GLY GLU LYS THR ALA ASN ILE LYS ALA ILE ALA SER SEQRES 15 A 646 SER PHE ASP LEU THR GLU ASP ALA ILE ASN GLN ALA ILE SEQRES 16 A 646 SER GLN SER TRP VAL GLN PRO ASP TYR PHE VAL PRO LEU SEQRES 17 A 646 LYS ILE ILE ASP GLY ALA THR PRO GLU LEU PRO ALA GLY SEQRES 18 A 646 ALA THR ILE GLN GLU VAL ASP GLY ARG TYR TYR PRO LEU SEQRES 19 A 646 GLY GLU ALA ALA ALA GLN LEU ILE GLY TYR VAL GLY ASP SEQRES 20 A 646 ILE THR ALA GLU ASP ILE ASP LYS ASN PRO GLU LEU SER SEQRES 21 A 646 SER ASN GLY LYS ILE GLY ARG SER GLY LEU GLU MET ALA SEQRES 22 A 646 PHE ASP LYS ASP LEU ARG GLY THR THR GLY GLY LYS LEU SEQRES 23 A 646 SER ILE THR ASP ALA ASP GLY VAL GLU LYS LYS VAL LEU SEQRES 24 A 646 ILE GLU HIS GLU VAL GLN ASN GLY LYS ASP ILE LYS LEU SEQRES 25 A 646 THR ILE ASP ALA LYS ALA GLN LYS THR ALA PHE ASP SER SEQRES 26 A 646 LEU GLY GLY LYS ALA GLY SER THR VAL ALA THR THR PRO SEQRES 27 A 646 LYS THR GLY ASP LEU LEU ALA LEU ALA SER SER PRO SER SEQRES 28 A 646 TYR ASP PRO ASN LYS MET THR ASN GLY ILE SER GLN GLU SEQRES 29 A 646 ASP TYR LYS ALA TYR GLU GLU ASN PRO GLU GLN PRO PHE SEQRES 30 A 646 ILE SER ARG PHE ALA THR GLY TYR ALA PRO GLY SER THR SEQRES 31 A 646 PHE LYS MET ILE THR ALA ALA ILE GLY LEU ASP ASN GLY SEQRES 32 A 646 THR ILE ASP PRO ASN GLU VAL LEU THR ILE ASN GLY LEU SEQRES 33 A 646 LYS TRP GLN LYS ASP SER SER TRP GLY SER TYR GLN VAL SEQRES 34 A 646 THR ARG VAL SER SER ASP VAL SER GLN VAL ASP LEU LYS SEQRES 35 A 646 THR ALA LEU ILE TYR SER ASP ASN ILE TYR THR ALA GLN SEQRES 36 A 646 GLU THR LEU LYS MET GLY GLU LYS LYS PHE ARG THR GLY SEQRES 37 A 646 LEU ASP LYS PHE ILE PHE GLY GLU ASP LEU ASP LEU PRO SEQRES 38 A 646 ILE SER MET ASN PRO ALA GLN ILE SER ASN GLU ASP SER SEQRES 39 A 646 PHE ASN SER ASP ILE LEU LEU ALA ASP THR GLY TYR GLY SEQRES 40 A 646 GLN GLY GLU LEU LEU ILE ASN PRO ILE GLN GLN ALA ALA SEQRES 41 A 646 MET TYR SER VAL PHE ALA ASN ASN GLY THR LEU VAL TYR SEQRES 42 A 646 PRO LYS LEU ILE ALA ASP LYS GLU THR LYS ASP LYS LYS SEQRES 43 A 646 ASN VAL ILE GLY GLU THR ALA VAL GLN THR ILE VAL PRO SEQRES 44 A 646 ASP LEU ARG GLU VAL VAL GLN ASP VAL ASN GLY THR ALA SEQRES 45 A 646 HIS SER LEU SER ALA LEU GLY ILE PRO LEU ALA ALA LYS SEQRES 46 A 646 THR GLY THR ALA GLU ILE LYS GLU LYS GLN ASP VAL LYS SEQRES 47 A 646 GLY LYS GLU ASN SER PHE LEU PHE ALA PHE ASN PRO ASP SEQRES 48 A 646 ASN GLN GLY TYR MET MET VAL SER MET LEU GLU ASN LYS SEQRES 49 A 646 GLU ASP ASP ASP SER ALA THR LYS ARG ALA SER GLU LEU SEQRES 50 A 646 LEU GLN TYR LEU ASN GLN ASN TYR GLN HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET SO4 A 709 5 HET SO4 A 710 5 HET SO4 A 711 5 HET SO4 A 712 5 HET SO4 A 713 5 HET SO4 A 714 5 HET PNM A 715 23 HET SO4 A 716 5 HET SO4 A 717 5 HET SO4 A 718 5 HET SO4 A 719 5 HET SO4 A 720 5 HET SO4 A 721 5 HET SO4 A 722 5 HET SO4 A 723 5 HET SO4 A 724 5 HET SO4 A 725 5 HET SO4 A 726 5 HET SO4 A 727 5 HETNAM SO4 SULFATE ION HETNAM PNM OPEN FORM - PENICILLIN G FORMUL 2 SO4 26(O4 S 2-) FORMUL 16 PNM C16 H20 N2 O4 S FORMUL 29 HOH *145(H2 O) HELIX 1 AA1 ALA A 41 LYS A 58 1 18 HELIX 2 AA2 ASP A 60 GLU A 66 1 7 HELIX 3 AA3 SER A 79 ALA A 94 1 16 HELIX 4 AA4 GLN A 150 VAL A 154 5 5 HELIX 5 AA5 PRO A 197 LEU A 200 5 4 HELIX 6 AA6 GLY A 203 PHE A 217 1 15 HELIX 7 AA7 THR A 220 ILE A 228 1 9 HELIX 8 AA8 LEU A 267 ALA A 270 5 4 HELIX 9 AA9 ALA A 271 GLY A 276 1 6 HELIX 10 AB1 THR A 282 ASN A 289 1 8 HELIX 11 AB2 GLY A 302 PHE A 307 1 6 HELIX 12 AB3 PHE A 307 GLY A 313 1 7 HELIX 13 AB4 ASP A 348 LEU A 359 1 12 HELIX 14 AB5 ASP A 386 ASN A 392 1 7 HELIX 15 AB6 SER A 395 GLU A 404 1 10 HELIX 16 AB7 SER A 412 THR A 416 5 5 HELIX 17 AB8 PRO A 420 THR A 423 5 4 HELIX 18 AB9 PHE A 424 ASN A 435 1 12 HELIX 19 AC1 ASP A 454 GLY A 458 5 5 HELIX 20 AC2 ASP A 472 SER A 480 1 9 HELIX 21 AC3 ASP A 481 ASP A 502 1 22 HELIX 22 AC4 SER A 529 TYR A 538 1 10 HELIX 23 AC5 ASN A 546 TYR A 554 1 9 HELIX 24 AC6 SER A 555 ASN A 559 5 5 HELIX 25 AC7 GLY A 582 ASP A 599 1 18 HELIX 26 AC8 ALA A 604 GLY A 611 5 8 HELIX 27 AC9 ALA A 662 ARG A 665 5 4 HELIX 28 AD1 ALA A 666 TYR A 677 1 12 SHEET 1 AA1 4 LYS A 97 VAL A 106 0 SHEET 2 AA1 4 SER A 115 THR A 124 -1 O LYS A 119 N SER A 102 SHEET 3 AA1 4 GLY A 127 ASP A 139 -1 O LEU A 129 N MET A 122 SHEET 4 AA1 4 THR A 146 ASN A 148 -1 O ASN A 148 N THR A 137 SHEET 1 AA2 3 LYS A 163 GLN A 169 0 SHEET 2 AA2 3 GLY A 316 THR A 322 -1 O GLY A 316 N GLN A 169 SHEET 3 AA2 3 GLU A 328 HIS A 335 -1 O LYS A 330 N ILE A 321 SHEET 1 AA3 3 VAL A 239 ILE A 244 0 SHEET 2 AA3 3 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA3 3 ALA A 255 TYR A 264 -1 O VAL A 260 N LEU A 190 SHEET 1 AA4 4 VAL A 239 ILE A 244 0 SHEET 2 AA4 4 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA4 4 ILE A 176 ILE A 177 -1 N ILE A 176 O LEU A 184 SHEET 4 AA4 4 ILE A 343 LYS A 344 1 O ILE A 343 N ILE A 177 SHEET 1 AA5 2 TYR A 277 ASP A 280 0 SHEET 2 AA5 2 LYS A 297 SER A 301 -1 O ARG A 300 N TYR A 277 SHEET 1 AA6 5 LEU A 376 SER A 382 0 SHEET 2 AA6 5 GLY A 364 THR A 369 -1 N ALA A 368 O LEU A 377 SHEET 3 AA6 5 MET A 648 LEU A 653 -1 O MET A 648 N THR A 369 SHEET 4 AA6 5 LYS A 632 PHE A 640 -1 N ALA A 639 O MET A 649 SHEET 5 AA6 5 ALA A 615 ILE A 623 -1 N ILE A 623 O LYS A 632 SHEET 1 AA7 2 LEU A 444 THR A 445 0 SHEET 2 AA7 2 GLN A 470 VAL A 471 -1 O VAL A 471 N LEU A 444 SHEET 1 AA8 2 LYS A 450 TRP A 451 0 SHEET 2 AA8 2 VAL A 462 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AA9 2 LEU A 563 VAL A 564 0 SHEET 2 AA9 2 ASP A 576 LYS A 577 -1 O LYS A 577 N LEU A 563 LINK OG SER A 422 C7 PNM A 715 1555 1555 1.36 CISPEP 1 SER A 382 PRO A 383 0 -2.61 CRYST1 193.621 193.621 155.603 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005165 0.002982 0.000000 0.00000 SCALE2 0.000000 0.005964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006427 0.00000 CONECT 2780 4831 CONECT 4760 4761 4762 4763 4764 CONECT 4761 4760 CONECT 4762 4760 CONECT 4763 4760 CONECT 4764 4760 CONECT 4765 4766 4767 4768 4769 CONECT 4766 4765 CONECT 4767 4765 CONECT 4768 4765 CONECT 4769 4765 CONECT 4770 4771 4772 4773 4774 CONECT 4771 4770 CONECT 4772 4770 CONECT 4773 4770 CONECT 4774 4770 CONECT 4775 4776 4777 4778 4779 CONECT 4776 4775 CONECT 4777 4775 CONECT 4778 4775 CONECT 4779 4775 CONECT 4780 4781 4782 4783 4784 CONECT 4781 4780 CONECT 4782 4780 CONECT 4783 4780 CONECT 4784 4780 CONECT 4785 4786 4787 4788 4789 CONECT 4786 4785 CONECT 4787 4785 CONECT 4788 4785 CONECT 4789 4785 CONECT 4790 4791 4792 4793 4794 CONECT 4791 4790 CONECT 4792 4790 CONECT 4793 4790 CONECT 4794 4790 CONECT 4795 4796 4797 4798 4799 CONECT 4796 4795 CONECT 4797 4795 CONECT 4798 4795 CONECT 4799 4795 CONECT 4800 4801 4802 4803 4804 CONECT 4801 4800 CONECT 4802 4800 CONECT 4803 4800 CONECT 4804 4800 CONECT 4805 4806 4807 4808 4809 CONECT 4806 4805 CONECT 4807 4805 CONECT 4808 4805 CONECT 4809 4805 CONECT 4810 4811 4812 4813 4814 CONECT 4811 4810 CONECT 4812 4810 CONECT 4813 4810 CONECT 4814 4810 CONECT 4815 4816 4817 4818 4819 CONECT 4816 4815 CONECT 4817 4815 CONECT 4818 4815 CONECT 4819 4815 CONECT 4820 4821 4822 4823 4824 CONECT 4821 4820 CONECT 4822 4820 CONECT 4823 4820 CONECT 4824 4820 CONECT 4825 4826 4827 4828 4829 CONECT 4826 4825 CONECT 4827 4825 CONECT 4828 4825 CONECT 4829 4825 CONECT 4830 4831 CONECT 4831 2780 4830 4842 CONECT 4832 4833 4841 CONECT 4833 4832 4834 4837 CONECT 4834 4833 4835 4836 CONECT 4835 4834 CONECT 4836 4834 CONECT 4837 4833 4838 4839 4840 CONECT 4838 4837 CONECT 4839 4837 CONECT 4840 4837 4841 CONECT 4841 4832 4840 4842 CONECT 4842 4831 4841 4843 CONECT 4843 4842 4844 CONECT 4844 4843 4845 4846 CONECT 4845 4844 CONECT 4846 4844 4847 CONECT 4847 4846 4848 4852 CONECT 4848 4847 4849 CONECT 4849 4848 4850 CONECT 4850 4849 4851 CONECT 4851 4850 4852 CONECT 4852 4847 4851 CONECT 4853 4854 4855 4856 4857 CONECT 4854 4853 CONECT 4855 4853 CONECT 4856 4853 CONECT 4857 4853 CONECT 4858 4859 4860 4861 4862 CONECT 4859 4858 CONECT 4860 4858 CONECT 4861 4858 CONECT 4862 4858 CONECT 4863 4864 4865 4866 4867 CONECT 4864 4863 CONECT 4865 4863 CONECT 4866 4863 CONECT 4867 4863 CONECT 4868 4869 4870 4871 4872 CONECT 4869 4868 CONECT 4870 4868 CONECT 4871 4868 CONECT 4872 4868 CONECT 4873 4874 4875 4876 4877 CONECT 4874 4873 CONECT 4875 4873 CONECT 4876 4873 CONECT 4877 4873 CONECT 4878 4879 4880 4881 4882 CONECT 4879 4878 CONECT 4880 4878 CONECT 4881 4878 CONECT 4882 4878 CONECT 4883 4884 4885 4886 4887 CONECT 4884 4883 CONECT 4885 4883 CONECT 4886 4883 CONECT 4887 4883 CONECT 4888 4889 4890 4891 4892 CONECT 4889 4888 CONECT 4890 4888 CONECT 4891 4888 CONECT 4892 4888 CONECT 4893 4894 4895 4896 4897 CONECT 4894 4893 CONECT 4895 4893 CONECT 4896 4893 CONECT 4897 4893 CONECT 4898 4899 4900 4901 4902 CONECT 4899 4898 CONECT 4900 4898 CONECT 4901 4898 CONECT 4902 4898 CONECT 4903 4904 4905 4906 4907 CONECT 4904 4903 CONECT 4905 4903 CONECT 4906 4903 CONECT 4907 4903 CONECT 4908 4909 4910 4911 4912 CONECT 4909 4908 CONECT 4910 4908 CONECT 4911 4908 CONECT 4912 4908 MASTER 357 0 27 28 27 0 0 6 5056 1 154 50 END