HEADER ANTIBIOTIC 10-NOV-22 8F3T TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 5 (PBP5) T485M T499I TITLE 2 V629E VARIANT APO FORM FROM ENTEROCOCCUS FAECIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN PBP5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 GENE: PBP5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN BINDING, ANTIBIOTIC RESISTANCE, ANTIBIOTICS, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR E.D.D'ANDREA,M.S.CHOY,M.V.SCHOENLE,R.PAGE,W.PETI REVDAT 2 25-OCT-23 8F3T 1 REMARK REVDAT 1 05-JUL-23 8F3T 0 JRNL AUTH Y.HUNASHAL,G.S.KUMAR,M.S.CHOY,A.DA SILVA SANTIAGO, JRNL AUTH 2 E.D.D'ANDREA,M.V.SCHOENLE,M.ARTHUR,L.B.RICE,R.PAGE,W.PETI JRNL TITL THE MOLECULAR BASIS FOR RESISTANCE OF E. FAECIUM PBP5 TO JRNL TITL 2 BETA-LACTAM ANTIBIOTICS JRNL REF NAT COMMUN 2023 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7800 - 7.9300 1.00 3334 155 0.1687 0.1686 REMARK 3 2 7.9300 - 6.3000 1.00 3332 145 0.1802 0.1829 REMARK 3 3 6.3000 - 5.5100 1.00 3311 161 0.1801 0.1649 REMARK 3 4 5.5100 - 5.0000 1.00 3291 204 0.1523 0.1656 REMARK 3 5 5.0000 - 4.6500 1.00 3315 164 0.1476 0.1330 REMARK 3 6 4.6500 - 4.3700 1.00 3330 155 0.1425 0.1527 REMARK 3 7 4.3700 - 4.1500 1.00 3303 176 0.1398 0.1997 REMARK 3 8 4.1500 - 3.9700 1.00 3303 166 0.1600 0.1963 REMARK 3 9 3.9700 - 3.8200 1.00 3337 163 0.1795 0.2177 REMARK 3 10 3.8200 - 3.6900 1.00 3316 145 0.1746 0.2072 REMARK 3 11 3.6900 - 3.5700 1.00 3305 174 0.1869 0.2179 REMARK 3 12 3.5700 - 3.4700 1.00 3328 173 0.1835 0.2191 REMARK 3 13 3.4700 - 3.3800 1.00 3246 173 0.2171 0.2873 REMARK 3 14 3.3800 - 3.3000 1.00 3355 135 0.2260 0.2362 REMARK 3 15 3.3000 - 3.2200 1.00 3324 175 0.2240 0.2604 REMARK 3 16 3.2200 - 3.1500 1.00 3278 188 0.2339 0.2782 REMARK 3 17 3.1500 - 3.0900 1.00 3296 202 0.2267 0.2263 REMARK 3 18 3.0900 - 3.0300 1.00 3264 205 0.2399 0.2348 REMARK 3 19 3.0300 - 2.9800 1.00 3288 195 0.2695 0.3256 REMARK 3 20 2.9800 - 2.9300 1.00 3297 154 0.2664 0.3041 REMARK 3 21 2.9300 - 2.8800 1.00 3276 177 0.3024 0.3486 REMARK 3 22 2.8800 - 2.8400 1.00 3305 217 0.2878 0.3198 REMARK 3 23 2.8400 - 2.7900 1.00 3309 179 0.2686 0.2892 REMARK 3 24 2.7900 - 2.7600 1.00 3349 137 0.2624 0.2917 REMARK 3 25 2.7600 - 2.7200 1.00 3258 186 0.2588 0.2746 REMARK 3 26 2.7200 - 2.6800 1.00 3332 179 0.2691 0.3141 REMARK 3 27 2.6800 - 2.6500 1.00 3311 157 0.2759 0.3019 REMARK 3 28 2.6500 - 2.6200 1.00 3281 213 0.2822 0.3591 REMARK 3 29 2.6200 - 2.5900 1.00 3305 167 0.3042 0.3313 REMARK 3 30 2.5900 - 2.5600 0.97 3191 182 0.3287 0.3618 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 5021 REMARK 3 ANGLE : 0.412 6812 REMARK 3 CHIRALITY : 0.040 759 REMARK 3 PLANARITY : 0.003 887 REMARK 3 DIHEDRAL : 10.992 1843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 39.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 1.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 5.0, 3.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.71350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.71350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.71350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.71350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.71350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.71350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 910 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1032 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 GLN A 37 REMARK 465 GLU A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 CE NZ REMARK 470 LYS A 70 CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 108 CD CE NZ REMARK 470 LYS A 109 CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LYS A 491 CE NZ REMARK 470 GLU A 629 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 716 O HOH A 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -121.27 -99.05 REMARK 500 ASP A 107 -169.12 -123.38 REMARK 500 LYS A 109 -72.17 -104.37 REMARK 500 ASP A 131 76.57 34.72 REMARK 500 LYS A 135 -167.69 -124.88 REMARK 500 ASP A 142 -122.51 57.34 REMARK 500 GLU A 157 58.32 -117.16 REMARK 500 ASN A 161 37.40 -93.84 REMARK 500 LYS A 199 33.49 -79.12 REMARK 500 ASP A 202 -52.94 -131.42 REMARK 500 LEU A 241 -61.86 -107.78 REMARK 500 PRO A 249 -159.56 -76.84 REMARK 500 ALA A 271 28.81 -140.90 REMARK 500 GLN A 408 80.01 55.73 REMARK 500 ASP A 454 -167.98 -164.23 REMARK 500 PHE A 504 -151.05 -87.94 REMARK 500 PRO A 513 40.09 -80.25 REMARK 500 GLN A 540 -133.82 -106.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 722 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 480 OG REMARK 620 2 THR A 618 OG1 107.3 REMARK 620 3 HOH A 875 O 107.1 110.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 721 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 524 OE2 REMARK 620 2 HOH A 973 O 122.5 REMARK 620 3 HOH A 987 O 130.9 13.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 720 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 542 OE1 REMARK 620 2 GLU A 542 OE2 42.4 REMARK 620 3 HOH A 813 O 85.3 47.2 REMARK 620 4 HOH A 888 O 79.9 121.8 159.3 REMARK 620 5 HOH A 904 O 122.2 93.5 81.9 118.3 REMARK 620 6 HOH A1047 O 114.9 96.1 54.7 119.7 102.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8F3F RELATED DB: PDB REMARK 900 SAME PROTEIN BUT DIFFERENT MUTATION DBREF 8F3T A 37 678 UNP G5CKR9 G5CKR9_ENTFC 37 678 SEQADV 8F3T GLY A 34 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3T HIS A 35 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3T MET A 36 UNP G5CKR9 EXPRESSION TAG SEQADV 8F3T MET A 485 UNP G5CKR9 THR 485 ENGINEERED MUTATION SEQADV 8F3T ILE A 499 UNP G5CKR9 THR 499 ENGINEERED MUTATION SEQADV 8F3T VAL A 586 UNP G5CKR9 LEU 586 CONFLICT SEQADV 8F3T GLU A 629 UNP G5CKR9 VAL 629 ENGINEERED MUTATION SEQRES 1 A 645 GLY HIS MET GLN GLU THR GLN ALA VAL GLU ALA GLY GLU SEQRES 2 A 645 LYS THR VAL GLU GLN PHE VAL GLN ALA LEU ASN LYS GLY SEQRES 3 A 645 ASP TYR ASN LYS ALA ALA GLU MET THR SER LYS LYS ALA SEQRES 4 A 645 ALA ASN LYS SER ALA LEU SER GLU LYS GLU ILE LEU ASP SEQRES 5 A 645 LYS TYR GLN ASN ILE TYR GLY ALA ALA ASP VAL LYS GLY SEQRES 6 A 645 LEU GLN ILE SER ASN LEU LYS VAL ASP LYS LYS ASP ASP SEQRES 7 A 645 SER THR TYR SER PHE SER TYR LYS ALA LYS MET ASN THR SEQRES 8 A 645 SER LEU GLY GLU LEU LYS ASP LEU SER TYR LYS GLY THR SEQRES 9 A 645 LEU ASP ARG ASN ASP GLY GLN THR THR ILE ASN TRP GLN SEQRES 10 A 645 PRO ASN LEU VAL PHE PRO GLU MET GLU GLY ASN ASP LYS SEQRES 11 A 645 VAL SER LEU THR THR GLN GLU ALA ALA ARG GLY ASN ILE SEQRES 12 A 645 ILE ASP ARG ASN GLY GLU PRO LEU ALA THR THR GLY LYS SEQRES 13 A 645 LEU LYS GLN LEU GLY VAL VAL PRO SER LYS LEU GLY ASP SEQRES 14 A 645 GLY GLY GLU LYS THR ALA ASN ILE LYS ALA ILE ALA SER SEQRES 15 A 645 SER PHE ASP LEU THR GLU ASP ALA ILE ASN GLN ALA ILE SEQRES 16 A 645 SER GLN SER TRP VAL GLN PRO ASP TYR PHE VAL PRO LEU SEQRES 17 A 645 LYS ILE ILE ASP GLY ALA THR PRO GLU LEU PRO ALA GLY SEQRES 18 A 645 ALA THR ILE GLN GLU VAL ASP GLY ARG TYR TYR PRO LEU SEQRES 19 A 645 GLY GLU ALA ALA ALA GLN LEU ILE GLY TYR VAL GLY ASP SEQRES 20 A 645 ILE THR ALA GLU ASP ILE ASP LYS ASN PRO GLU LEU SER SEQRES 21 A 645 SER ASN GLY LYS ILE GLY ARG SER GLY LEU GLU MET ALA SEQRES 22 A 645 PHE ASP LYS ASP LEU ARG GLY THR THR GLY GLY LYS LEU SEQRES 23 A 645 SER ILE THR ASP ALA ASP GLY VAL GLU LYS LYS VAL LEU SEQRES 24 A 645 ILE GLU HIS GLU VAL GLN ASN GLY LYS ASP ILE LYS LEU SEQRES 25 A 645 THR ILE ASP ALA LYS ALA GLN LYS THR ALA PHE ASP SER SEQRES 26 A 645 LEU GLY GLY LYS ALA GLY SER THR VAL ALA THR THR PRO SEQRES 27 A 645 LYS THR GLY ASP LEU LEU ALA LEU ALA SER SER PRO SER SEQRES 28 A 645 TYR ASP PRO ASN LYS MET THR ASN GLY ILE SER GLN GLU SEQRES 29 A 645 ASP TYR LYS ALA TYR GLU GLU ASN PRO GLU GLN PRO PHE SEQRES 30 A 645 ILE SER ARG PHE ALA THR GLY TYR ALA PRO GLY SER THR SEQRES 31 A 645 PHE LYS MET ILE THR ALA ALA ILE GLY LEU ASP ASN GLY SEQRES 32 A 645 THR ILE ASP PRO ASN GLU VAL LEU THR ILE ASN GLY LEU SEQRES 33 A 645 LYS TRP GLN LYS ASP SER SER TRP GLY SER TYR GLN VAL SEQRES 34 A 645 THR ARG VAL SER ASP VAL SER GLN VAL ASP LEU LYS THR SEQRES 35 A 645 ALA LEU ILE TYR SER ASP ASN ILE TYR MET ALA GLN GLU SEQRES 36 A 645 THR LEU LYS MET GLY GLU LYS LYS PHE ARG ILE GLY LEU SEQRES 37 A 645 ASP LYS PHE ILE PHE GLY GLU ASP LEU ASP LEU PRO ILE SEQRES 38 A 645 SER MET ASN PRO ALA GLN ILE SER ASN GLU ASP SER PHE SEQRES 39 A 645 ASN SER ASP ILE LEU LEU ALA ASP THR GLY TYR GLY GLN SEQRES 40 A 645 GLY GLU LEU LEU ILE ASN PRO ILE GLN GLN ALA ALA MET SEQRES 41 A 645 TYR SER VAL PHE ALA ASN ASN GLY THR LEU VAL TYR PRO SEQRES 42 A 645 LYS LEU ILE ALA ASP LYS GLU THR LYS ASP LYS LYS ASN SEQRES 43 A 645 VAL ILE GLY GLU THR ALA VAL GLN THR ILE VAL PRO ASP SEQRES 44 A 645 LEU ARG GLU VAL VAL GLN ASP VAL ASN GLY THR ALA HIS SEQRES 45 A 645 SER LEU SER ALA LEU GLY ILE PRO LEU ALA ALA LYS THR SEQRES 46 A 645 GLY THR ALA GLU ILE LYS GLU LYS GLN ASP GLU LYS GLY SEQRES 47 A 645 LYS GLU ASN SER PHE LEU PHE ALA PHE ASN PRO ASP ASN SEQRES 48 A 645 GLN GLY TYR MET MET VAL SER MET LEU GLU ASN LYS GLU SEQRES 49 A 645 ASP ASP ASP SER ALA THR LYS ARG ALA SER GLU LEU LEU SEQRES 50 A 645 GLN TYR LEU ASN GLN ASN TYR GLN HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET SO4 A 709 5 HET SO4 A 710 5 HET SO4 A 711 5 HET SO4 A 712 5 HET SO4 A 713 5 HET SO4 A 714 5 HET SO4 A 715 5 HET SO4 A 716 5 HET SO4 A 717 5 HET SO4 A 718 5 HET SO4 A 719 5 HET NA A 720 1 HET NA A 721 1 HET NA A 722 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 2 SO4 19(O4 S 2-) FORMUL 21 NA 3(NA 1+) FORMUL 24 HOH *256(H2 O) HELIX 1 AA1 THR A 39 LYS A 58 1 20 HELIX 2 AA2 ASP A 60 GLU A 66 1 7 HELIX 3 AA3 SER A 79 ALA A 94 1 16 HELIX 4 AA4 GLN A 150 VAL A 154 5 5 HELIX 5 AA5 PRO A 197 LEU A 200 5 4 HELIX 6 AA6 GLY A 203 PHE A 217 1 15 HELIX 7 AA7 THR A 220 SER A 229 1 10 HELIX 8 AA8 LEU A 267 ALA A 270 5 4 HELIX 9 AA9 ALA A 271 GLY A 276 1 6 HELIX 10 AB1 THR A 282 ASN A 289 1 8 HELIX 11 AB2 SER A 301 PHE A 307 1 7 HELIX 12 AB3 PHE A 307 GLY A 313 1 7 HELIX 13 AB4 ASP A 348 LEU A 359 1 12 HELIX 14 AB5 ASP A 386 ASN A 392 1 7 HELIX 15 AB6 SER A 395 ASN A 405 1 11 HELIX 16 AB7 SER A 412 THR A 416 5 5 HELIX 17 AB8 PRO A 420 THR A 423 5 4 HELIX 18 AB9 PHE A 424 ASN A 435 1 12 HELIX 19 AC1 ASP A 454 GLY A 458 5 5 HELIX 20 AC2 ASP A 472 SER A 480 1 9 HELIX 21 AC3 ASP A 481 GLY A 493 1 13 HELIX 22 AC4 GLY A 493 ASP A 502 1 10 HELIX 23 AC5 SER A 529 TYR A 538 1 10 HELIX 24 AC6 ASN A 546 SER A 555 1 10 HELIX 25 AC7 VAL A 556 ASN A 559 5 4 HELIX 26 AC8 GLY A 582 ASP A 599 1 18 HELIX 27 AC9 ALA A 604 GLY A 611 5 8 HELIX 28 AD1 ALA A 662 ARG A 665 5 4 HELIX 29 AD2 ALA A 666 TYR A 677 1 12 SHEET 1 AA1 3 LYS A 97 VAL A 106 0 SHEET 2 AA1 3 THR A 113 THR A 124 -1 O ASN A 123 N LYS A 97 SHEET 3 AA1 3 GLY A 127 TYR A 134 -1 O LEU A 129 N MET A 122 SHEET 1 AA2 4 LYS A 97 VAL A 106 0 SHEET 2 AA2 4 THR A 113 THR A 124 -1 O ASN A 123 N LYS A 97 SHEET 3 AA2 4 THR A 137 ASN A 141 -1 O LEU A 138 N TYR A 114 SHEET 4 AA2 4 GLN A 144 ASN A 148 -1 O THR A 146 N ASP A 139 SHEET 1 AA3 3 LYS A 163 GLN A 169 0 SHEET 2 AA3 3 GLY A 316 THR A 322 -1 O GLY A 316 N GLN A 169 SHEET 3 AA3 3 GLU A 328 HIS A 335 -1 O ILE A 333 N LEU A 319 SHEET 1 AA4 3 VAL A 239 ILE A 244 0 SHEET 2 AA4 3 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA4 3 ALA A 255 TYR A 264 -1 O GLN A 258 N GLN A 192 SHEET 1 AA5 4 VAL A 239 ILE A 244 0 SHEET 2 AA5 4 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA5 4 ILE A 176 ILE A 177 -1 N ILE A 176 O LEU A 184 SHEET 4 AA5 4 ILE A 343 LYS A 344 1 O ILE A 343 N ILE A 177 SHEET 1 AA6 2 VAL A 278 ASP A 280 0 SHEET 2 AA6 2 LYS A 297 GLY A 299 -1 O ILE A 298 N GLY A 279 SHEET 1 AA7 5 LEU A 376 SER A 382 0 SHEET 2 AA7 5 GLY A 364 THR A 369 -1 N GLY A 364 O SER A 382 SHEET 3 AA7 5 MET A 648 LEU A 653 -1 O MET A 648 N THR A 369 SHEET 4 AA7 5 LYS A 632 PHE A 640 -1 N ALA A 639 O MET A 649 SHEET 5 AA7 5 ALA A 615 ILE A 623 -1 N ILE A 623 O LYS A 632 SHEET 1 AA8 2 LEU A 444 THR A 445 0 SHEET 2 AA8 2 GLN A 470 VAL A 471 -1 O VAL A 471 N LEU A 444 SHEET 1 AA9 2 LYS A 450 TRP A 451 0 SHEET 2 AA9 2 VAL A 462 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AB1 2 LEU A 563 VAL A 564 0 SHEET 2 AB1 2 ASP A 576 LYS A 577 -1 O LYS A 577 N LEU A 563 LINK OG SER A 480 NA NA A 722 1555 1555 3.03 LINK OE2 GLU A 524 NA NA A 721 1555 12544 2.90 LINK OE1 GLU A 542 NA NA A 720 1555 1555 2.85 LINK OE2 GLU A 542 NA NA A 720 1555 1555 3.17 LINK OG1 THR A 618 NA NA A 722 1555 1555 2.75 LINK NA NA A 720 O HOH A 813 1555 1555 3.05 LINK NA NA A 720 O HOH A 888 1555 1555 2.63 LINK NA NA A 720 O HOH A 904 1555 1555 2.84 LINK NA NA A 720 O HOH A1047 1555 1555 2.91 LINK NA NA A 721 O HOH A 973 1555 1555 2.53 LINK NA NA A 721 O HOH A 987 1555 12544 2.48 LINK NA NA A 722 O HOH A 875 1555 11554 2.73 CISPEP 1 SER A 382 PRO A 383 0 -3.41 CRYST1 192.777 192.777 155.427 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005187 0.002995 0.000000 0.00000 SCALE2 0.000000 0.005990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006434 0.00000