data_8F4O # _entry.id 8F4O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8F4O pdb_00008f4o 10.2210/pdb8f4o/pdb WWPDB D_1000269964 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8F4O _pdbx_database_status.recvd_initial_deposition_date 2022-11-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, H.-K.' 1 ? 'Wang, Y.-X.' 2 ? 'Stagno, J.R.' 3 0000-0002-6464-7829 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 848 _citation.page_last 859.e3 _citation.title 'Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2023.05.003 _citation.pdbx_database_id_PubMed 37253356 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, H.K.' 1 ? primary 'Lee, Y.T.' 2 ? primary 'Fan, L.' 3 ? primary 'Wilt, H.M.' 4 ? primary 'Conrad, C.E.' 5 ? primary 'Yu, P.' 6 ? primary 'Zhang, J.' 7 ? primary 'Shi, G.' 8 ? primary 'Ji, X.' 9 ? primary 'Wang, Y.X.' 10 ? primary 'Stagno, J.R.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8F4O _cell.details ? _cell.formula_units_Z ? _cell.length_a 139.264 _cell.length_a_esd ? _cell.length_b 139.264 _cell.length_b_esd ? _cell.length_c 97.905 _cell.length_c_esd ? _cell.volume 1644421.830 _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8F4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'TPP riboswitch aptamer domain' 26798.936 2 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 28 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 2 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 83 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP026935.2 _struct_ref.pdbx_db_accession 1845826323 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC _struct_ref.pdbx_align_begin 1875216 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8F4O A 2 ? 80 ? 1845826323 1875216 ? 1875294 ? 10 88 2 1 8F4O B 2 ? 80 ? 1845826323 1875216 ? 1875294 ? 10 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8F4O G A 1 ? GB 1845826323 ? ? insertion 9 1 1 8F4O G A 81 ? GB 1845826323 ? ? insertion 89 2 1 8F4O C A 82 ? GB 1845826323 ? ? insertion 90 3 1 8F4O A A 83 ? GB 1845826323 ? ? insertion 91 4 2 8F4O G B 1 ? GB 1845826323 ? ? insertion 9 5 2 8F4O G B 81 ? GB 1845826323 ? ? insertion 89 6 2 8F4O C B 82 ? GB 1845826323 ? ? insertion 90 7 2 8F4O A B 83 ? GB 1845826323 ? ? insertion 91 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8F4O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M Tris-Bicine, pH 8.3, 12.5% MPD, 12.5% PEG 3350, 12.5% PEG 1000, 0.12 M ethylene glycol mixture ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.103025 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.103025 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 142.18 _reflns.entry_id 8F4O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 48.95 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19251 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.00 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.122 _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.31 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all 15240 _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1863 _reflns_shell.percent_possible_obs 99.8 _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.2 _reflns_shell.pdbx_chi_squared 0.98 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs 0.9 _reflns_shell.pdbx_Rrim_I_all 3.070 _reflns_shell.pdbx_Rpim_I_all 1.073 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.502 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.868 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 143.14 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8F4O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.10 _refine.ls_d_res_low 45.58 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18652 _refine.ls_number_reflns_R_free 960 _refine.ls_number_reflns_R_work 17692 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.79 _refine.ls_percent_reflns_R_free 5.15 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2836 _refine.ls_R_factor_R_free 0.3166 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2818 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model 4NYG _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.3155 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4915 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 45.58 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3151 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2922 _refine_hist.pdbx_number_atoms_ligand 229 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0035 ? 3550 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0495 ? 5702 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0905 ? 692 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0041 ? 137 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 21.1469 ? 1670 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.10 3.26 . . 102 2071 79.25 . . . . 0.3648 . . . . . . . . . . . 0.3526 'X-RAY DIFFRACTION' 3.26 3.47 . . 148 2587 99.09 . . . . 0.3462 . . . . . . . . . . . 0.3776 'X-RAY DIFFRACTION' 3.47 3.74 . . 134 2600 99.78 . . . . 0.2959 . . . . . . . . . . . 0.3612 'X-RAY DIFFRACTION' 3.74 4.11 . . 140 2605 99.85 . . . . 0.2865 . . . . . . . . . . . 0.2832 'X-RAY DIFFRACTION' 4.11 4.71 . . 153 2607 99.89 . . . . 0.2846 . . . . . . . . . . . 0.3180 'X-RAY DIFFRACTION' 4.71 5.92 . . 114 2625 99.89 . . . . 0.2640 . . . . . . . . . . . 0.2744 'X-RAY DIFFRACTION' 5.93 45.58 . . 169 2597 99.78 . . . . 0.2762 . . . . . . . . . . . 0.3268 # _struct.entry_id 8F4O _struct.title 'Apo structure of the TPP riboswitch aptamer domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8F4O _struct_keywords.text 'RNA, Riboswitch, Aptamer, Thiamine pyrophosphate, TPP' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 3 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? EA N N 2 ? FA N N 3 ? GA N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog23 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog25 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog26 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 A ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 A ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 A ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 N3 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog38 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 18 N3 ? ? ? 1_555 A G 25 O6 ? ? A U 26 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A U 18 O2 ? ? ? 1_555 A G 25 N1 ? ? A U 26 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 52 N1 ? ? ? 1_555 B C 55 N3 ? ? A G 60 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 52 N2 ? ? ? 1_555 B C 55 O2 ? ? A G 60 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 52 O6 ? ? ? 1_555 B C 55 N4 ? ? A G 60 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 53 N1 ? ? ? 1_555 B U 54 N3 ? ? A A 61 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 53 N6 ? ? ? 1_555 B U 54 O4 ? ? A A 61 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 54 N3 ? ? ? 1_555 B A 53 N1 ? ? A U 62 B A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 54 O4 ? ? ? 1_555 B A 53 N6 ? ? A U 62 B A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 55 N3 ? ? ? 1_555 B G 52 N1 ? ? A C 63 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 55 N4 ? ? ? 1_555 B G 52 O6 ? ? A C 63 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 55 O2 ? ? ? 1_555 B G 52 N2 ? ? A C 63 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 67 N6 ? ? ? 1_555 B U 71 O2 ? ? A A 75 B U 79 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog73 hydrog ? ? A G 68 N1 ? ? ? 1_555 B U 71 O2 ? ? A G 76 B U 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A G 68 O6 ? ? ? 1_555 B U 71 N3 ? ? A G 76 B U 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? A C 69 N4 ? ? ? 1_555 B G 68 O6 ? ? A C 77 B G 76 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog76 hydrog ? ? A C 69 N4 ? ? ? 1_555 B C 69 N3 ? ? A C 77 B C 77 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog77 hydrog ? ? A U 71 N3 ? ? ? 1_555 B G 68 O6 ? ? A U 79 B G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog78 hydrog ? ? A U 71 O2 ? ? ? 1_555 B G 68 N1 ? ? A U 79 B G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog79 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 81 N1 ? ? B C 10 B G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 81 O6 ? ? B C 10 B G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 81 N2 ? ? B C 10 B G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 80 N3 ? ? B G 11 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 80 O2 ? ? B G 11 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 80 N4 ? ? B G 11 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 79 N3 ? ? B A 12 B U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 79 O4 ? ? B A 12 B U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 78 N1 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 78 O6 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 78 N2 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 77 N1 ? ? B U 14 B A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 77 N6 ? ? B U 14 B A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 42 N3 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 42 O2 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 42 N4 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 8 N2 ? ? ? 1_555 B A 76 N3 ? ? B G 16 B A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog99 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 9 N2 ? ? ? 1_555 B A 48 N3 ? ? B G 17 B A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog103 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 11 N2 ? ? ? 1_555 B G 34 N3 ? ? B G 19 B G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog107 hydrog ? ? B G 11 N3 ? ? ? 1_555 B G 34 N2 ? ? B G 19 B G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog108 hydrog ? ? B G 11 N1 ? ? ? 1_555 B A 39 N1 ? ? B G 19 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog109 hydrog ? ? B G 11 O6 ? ? ? 1_555 B A 39 N6 ? ? B G 19 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog110 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 37 N1 ? ? B U 20 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 37 N6 ? ? B U 20 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B U 31 N3 ? ? ? 1_555 B A 35 N7 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog116 hydrog ? ? B U 31 O2 ? ? ? 1_555 B A 35 N6 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog117 hydrog ? ? B A 45 N3 ? ? ? 1_555 B A 76 N6 ? ? B A 53 B A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog118 hydrog ? ? B A 48 N6 ? ? ? 1_555 B G 75 N3 ? ? B A 56 B G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog119 hydrog ? ? B A 48 N7 ? ? ? 1_555 B G 75 N2 ? ? B A 56 B G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog120 hydrog ? ? B C 49 N3 ? ? ? 1_555 B G 74 N1 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 49 N4 ? ? ? 1_555 B G 74 O6 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 49 O2 ? ? ? 1_555 B G 74 N2 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B C 50 N3 ? ? ? 1_555 B G 73 N1 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B C 50 N4 ? ? ? 1_555 B G 73 O6 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B C 50 O2 ? ? ? 1_555 B G 73 N2 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B U 51 N3 ? ? ? 1_555 B A 72 N1 ? ? B U 59 B A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B U 51 O4 ? ? ? 1_555 B A 72 N6 ? ? B U 59 B A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B U 56 N3 ? ? ? 1_555 B A 67 N1 ? ? B U 64 B A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B U 56 O4 ? ? ? 1_555 B A 67 N6 ? ? B U 64 B A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B G 57 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 57 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 57 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B G 58 N1 ? ? ? 1_555 B C 65 N3 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B G 58 N2 ? ? ? 1_555 B C 65 O2 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B G 58 O6 ? ? ? 1_555 B C 65 N4 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8F4O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007181 _atom_sites.fract_transf_matrix[1][2] 0.004146 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010214 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H IR N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 ? ? ? A . n A 1 2 C 2 10 ? ? ? A . n A 1 3 G 3 11 ? ? ? A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 27 C C A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 ? ? ? A . n A 1 23 G 23 31 ? ? ? A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 ? ? ? A . n A 1 46 U 46 54 ? ? ? A . n A 1 47 C 47 55 ? ? ? A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A 83 91 ? ? ? A . n B 1 1 G 1 9 9 G G B . n B 1 2 C 2 10 10 C C B . n B 1 3 G 3 11 11 G G B . n B 1 4 A 4 12 12 A A B . n B 1 5 C 5 13 13 C C B . n B 1 6 U 6 14 14 U U B . n B 1 7 C 7 15 15 C C B . n B 1 8 G 8 16 16 G G B . n B 1 9 G 9 17 17 G G B . n B 1 10 G 10 18 18 G G B . n B 1 11 G 11 19 19 G G B . n B 1 12 U 12 20 20 U U B . n B 1 13 G 13 21 21 G G B . n B 1 14 C 14 22 ? ? ? B . n B 1 15 C 15 23 ? ? ? B . n B 1 16 C 16 24 ? ? ? B . n B 1 17 U 17 25 ? ? ? B . n B 1 18 U 18 26 ? ? ? B . n B 1 19 C 19 27 ? ? ? B . n B 1 20 U 20 28 ? ? ? B . n B 1 21 G 21 29 ? ? ? B . n B 1 22 C 22 30 ? ? ? B . n B 1 23 G 23 31 ? ? ? B . n B 1 24 U 24 32 ? ? ? B . n B 1 25 G 25 33 ? ? ? B . n B 1 26 A 26 34 34 A A B . n B 1 27 A 27 35 35 A A B . n B 1 28 G 28 36 36 G G B . n B 1 29 G 29 37 37 G G B . n B 1 30 C 30 38 38 C C B . n B 1 31 U 31 39 39 U U B . n B 1 32 G 32 40 40 G G B . n B 1 33 A 33 41 41 A A B . n B 1 34 G 34 42 42 G G B . n B 1 35 A 35 43 43 A A B . n B 1 36 A 36 44 44 A A B . n B 1 37 A 37 45 45 A A B . n B 1 38 U 38 46 46 U U B . n B 1 39 A 39 47 47 A A B . n B 1 40 C 40 48 48 C C B . n B 1 41 C 41 49 49 C C B . n B 1 42 C 42 50 50 C C B . n B 1 43 G 43 51 51 G G B . n B 1 44 U 44 52 52 U U B . n B 1 45 A 45 53 53 A A B . n B 1 46 U 46 54 54 U U B . n B 1 47 C 47 55 55 C C B . n B 1 48 A 48 56 56 A A B . n B 1 49 C 49 57 57 C C B . n B 1 50 C 50 58 58 C C B . n B 1 51 U 51 59 59 U U B . n B 1 52 G 52 60 60 G G B . n B 1 53 A 53 61 61 A A B . n B 1 54 U 54 62 62 U U B . n B 1 55 C 55 63 63 C C B . n B 1 56 U 56 64 64 U U B . n B 1 57 G 57 65 65 G G B . n B 1 58 G 58 66 66 G G B . n B 1 59 A 59 67 67 A A B . n B 1 60 U 60 68 ? ? ? B . n B 1 61 A 61 69 ? ? ? B . n B 1 62 A 62 70 ? ? ? B . n B 1 63 U 63 71 ? ? ? B . n B 1 64 G 64 72 72 G G B . n B 1 65 C 65 73 73 C C B . n B 1 66 C 66 74 74 C C B . n B 1 67 A 67 75 75 A A B . n B 1 68 G 68 76 76 G G B . n B 1 69 C 69 77 77 C C B . n B 1 70 G 70 78 78 G G B . n B 1 71 U 71 79 79 U U B . n B 1 72 A 72 80 80 A A B . n B 1 73 G 73 81 81 G G B . n B 1 74 G 74 82 82 G G B . n B 1 75 G 75 83 83 G G B . n B 1 76 A 76 84 84 A A B . n B 1 77 A 77 85 85 A A B . n B 1 78 G 78 86 86 G G B . n B 1 79 U 79 87 87 U U B . n B 1 80 C 80 88 88 C C B . n B 1 81 G 81 89 89 G G B . n B 1 82 C 82 90 ? ? ? B . n B 1 83 A 83 91 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email jason.stagno@nih.gov _pdbx_contact_author.name_first Jason _pdbx_contact_author.name_last Stagno _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6464-7829 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IRI 1 101 5 IRI IRI A . D 2 IRI 1 102 7 IRI IRI A . E 2 IRI 1 103 10 IRI IRI A . F 2 IRI 1 104 11 IRI IRI A . G 2 IRI 1 105 12 IRI IRI A . H 2 IRI 1 106 14 IRI IRI A . I 2 IRI 1 107 15 IRI IRI A . J 2 IRI 1 108 16 IRI IRI A . K 2 IRI 1 109 17 IRI IRI A . L 2 IRI 1 110 19 IRI IRI A . M 2 IRI 1 111 22 IRI IRI A . N 2 IRI 1 112 24 IRI IRI A . O 2 IRI 1 113 30 IRI IRI A . P 2 IRI 1 114 32 IRI IRI A . Q 2 IRI 1 115 33 IRI IRI A . R 2 IRI 1 116 34 IRI IRI A . S 2 IRI 1 117 35 IRI IRI A . T 3 PGE 1 118 4 PGE PGE A . U 2 IRI 1 101 1 IRI IRI B . V 2 IRI 1 102 2 IRI IRI B . W 2 IRI 1 103 3 IRI IRI B . X 2 IRI 1 104 4 IRI IRI B . Y 2 IRI 1 105 6 IRI IRI B . Z 2 IRI 1 106 8 IRI IRI B . AA 2 IRI 1 107 9 IRI IRI B . BA 2 IRI 1 108 18 IRI IRI B . CA 2 IRI 1 109 26 IRI IRI B . DA 2 IRI 1 110 27 IRI IRI B . EA 2 IRI 1 111 31 IRI IRI B . FA 3 PGE 1 112 3 PGE PGE B . GA 4 PG4 1 113 5 PG4 PG4 B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-17 2 'Structure model' 1 1 2023-06-21 3 'Structure model' 1 2 2023-07-19 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -46.1559009858 15.2053526416 -8.01601099488 1.3141373342 ? -0.10083817423 ? 0.319097124274 ? 0.484376114436 ? -0.301620670338 ? 1.14576094109 ? 0.253229671195 ? -0.364262675143 ? -0.15040087528 ? 1.97066713158 ? -1.46000233833 ? 2.14808922312 ? -0.456101788434 ? 0.0148800410517 ? -0.556958197551 ? -0.117189749879 ? -0.199579230469 ? -1.13534283746 ? 0.458780339236 ? 0.315276696229 ? -1.81879762951 ? 2 'X-RAY DIFFRACTION' ? refined -26.15493388 33.8562480619 5.59279167079 0.979623743887 ? -0.342389279788 ? -0.412813777558 ? 1.37250132649 ? 0.831156742997 ? 1.92469779193 ? 0.369596211436 ? -0.417877529332 ? 0.0888191117549 ? 0.681051423575 ? 0.439380810789 ? 1.49631181729 ? 0.211726545406 ? -0.0463644228293 ? 0.223634504584 ? -0.125930091664 ? 0.172213920535 ? -0.0135189697206 ? -0.479313721189 ? -0.0436656415863 ? 0.286519480737 ? 3 'X-RAY DIFFRACTION' ? refined -35.5527222442 28.5710499158 3.32619284471 0.871377157147 ? 0.114119637025 ? 0.00294651825656 ? 0.594393913808 ? 0.295158076965 ? 1.02767336822 ? 0.043472622761 ? 0.304650430087 ? 0.374123198942 ? 1.99406172599 ? 2.35203000385 ? 2.75391452534 ? -0.542218019878 ? -0.0317529775799 ? -0.076038078088 ? 0.355876559747 ? -0.559944713931 ? 0.126282749141 ? -0.269953719904 ? 0.153623085787 ? -0.664724712334 ? 4 'X-RAY DIFFRACTION' ? refined -44.8950602716 18.4290206131 -3.29406244431 1.07940784267 ? -0.136835051166 ? 0.279037878966 ? -0.0233252193302 ? -0.99860671517 ? 0.967890439436 ? 1.45889957363 ? 0.613153556506 ? -0.150294304312 ? 2.37611226646 ? -0.211384045785 ? 0.0373799307894 ? -0.846357612817 ? 0.546373113714 ? -1.05417780553 ? -0.0616567983128 ? 0.477278886023 ? -0.649610513256 ? -0.171010454804 ? -0.147819647405 ? -1.08232184398 ? 5 'X-RAY DIFFRACTION' ? refined -47.9449141134 30.8521119928 -19.9258947621 0.827937105763 ? 0.649561947745 ? 0.254652794423 ? 1.37666379515 ? -0.192947710528 ? 0.64644640899 ? 0.348689802905 ? -0.471700724498 ? 0.161323406915 ? 0.592287685775 ? -0.208986635291 ? 0.0584736026549 ? 0.325156140645 ? 0.878103135062 ? -0.440410257463 ? -0.512916204385 ? -0.226231064508 ? 0.0219759818175 ? 0.0487527997613 ? -0.263508936224 ? 2.58598337765 ? 6 'X-RAY DIFFRACTION' ? refined -56.8136596955 54.6984061758 -19.8689193717 0.555573844028 ? 0.193213529955 ? -0.0408554995621 ? 1.62775099599 ? 0.134827488979 ? 0.441465695776 ? 0.264602247507 ? 0.873778544722 ? -0.397159573761 ? 2.77810719499 ? -0.877413376027 ? 0.652339074042 ? 0.692848007691 ? 0.350043001178 ? 0.113515248069 ? 0.168960653533 ? -1.21010915932 ? 0.200785208628 ? -0.530179686947 ? -0.16290587133 ? -0.136439875288 ? 7 'X-RAY DIFFRACTION' ? refined -51.8827784322 22.8133767454 -23.9568334648 1.66554541015 ? 0.222876957359 ? 0.278569280835 ? 2.78967109877 ? -0.905736639822 ? 1.4491187163 ? 0.439331236927 ? 0.295803034795 ? -0.320424235924 ? 0.321930640849 ? 0.0242899051475 ? 0.722576355713 ? -0.0419223748212 ? -0.00286872198533 ? -0.0872690933301 ? -0.371387206816 ? -0.519378763825 ? 0.204622711125 ? 0.0629470326882 ? -0.124996485001 ? -1.05200150008 ? 8 'X-RAY DIFFRACTION' ? refined -63.1945542865 3.11204097562 -9.13657555954 4.16021539899 ? 0.313841255381 ? 0.106195494341 ? 2.13205615603 ? -0.11455822446 ? 1.44419280048 ? 0.00964528301423 ? -0.0111633723213 ? 0.0174976498068 ? 0.0282345993785 ? -0.052178429091 ? 0.0629858002646 ? -0.211368076376 ? -0.0254263800746 ? -0.122274638541 ? 0.293810799719 ? 0.395867979457 ? -0.704867654442 ? -0.295676401982 ? 0.153842164309 ? 5.83602517633e-05 ? 9 'X-RAY DIFFRACTION' ? refined -21.703192599 56.1055665769 -22.7453916261 2.69107101708 ? -0.655517334359 ? -0.191918702443 ? 2.57288643353 ? 0.391671577323 ? 1.57929967815 ? 0.454192488325 ? 0.0513000278637 ? 0.0246990273768 ? 1.33037732441 ? 0.385412841294 ? 0.108751760962 ? 0.0293470246399 ? 0.3149461245 ? -0.701193528859 ? -0.570021933812 ? 0.575098842775 ? -1.18165019352 ? 0.0934182579885 ? 0.475744527837 ? 0.045600184242 ? 10 'X-RAY DIFFRACTION' ? refined -24.0645238803 41.1732487799 -14.3752516905 0.858658921034 ? 0.0139951877782 ? -0.36630723871 ? 1.04221470752 ? 0.0699275595471 ? 1.09796668604 ? 0.661677446224 ? -0.156566799992 ? -0.61846796075 ? 0.0331077124681 ? 0.163844988111 ? 0.560025753643 ? -0.743880848776 ? 0.339575387472 ? -0.454132951994 ? 0.4908544777 ? 0.180476359564 ? -0.93481552092 ? -0.362633015171 ? -0.324515877717 ? -0.108438534054 ? 11 'X-RAY DIFFRACTION' ? refined -27.0098235134 21.9914552618 -31.4104087266 1.68935944753 ? 0.254508475405 ? 0.539114052878 ? 1.5927015515 ? -0.208294586704 ? 0.764078970628 ? 0.105759704334 ? -0.0212597768257 ? 0.0489114302978 ? 0.00389293774694 ? -0.0059332190503 ? 0.0185629172154 ? 0.0219823541879 ? 0.637793438958 ? -0.174197983556 ? -0.311057514241 ? -0.0206693897871 ? -0.236117205572 ? 0.0317373814413 ? 0.319519965603 ? 0.169564552139 ? 12 'X-RAY DIFFRACTION' ? refined -25.7149555209 39.217640879 -22.4338919585 0.774116755996 ? -0.119488396846 ? -0.233783392519 ? 1.5450299626 ? 0.132853649079 ? 1.1281796765 ? 0.159624366968 ? -0.00381581644983 ? -0.24114060551 ? 0.0220680039023 ? -0.020805615838 ? 0.334802890759 ? -0.798936443251 ? 0.87595326182 ? 0.210744110013 ? 0.28245917421 ? -0.598685149884 ? 0.402557731763 ? -0.168020928698 ? 0.500006216115 ? -0.0375473638041 ? 13 'X-RAY DIFFRACTION' ? refined -44.5551940747 40.6264482918 -17.692735573 0.7084365937 ? -0.0875878626112 ? 0.0476624772013 ? 0.943030301027 ? -0.0986680048383 ? 1.02122547402 ? 0.230832562202 ? -0.203647319963 ? 0.188922000641 ? 0.909504545447 ? -0.317093597316 ? 0.192910973529 ? -0.669931871587 ? -0.304112797335 ? 0.577850450651 ? 0.709752003246 ? -0.0108196479947 ? -0.333421604379 ? 0.0402182752007 ? -0.186224001255 ? -0.0558867197911 ? 14 'X-RAY DIFFRACTION' ? refined -64.9719976014 38.8929855988 -32.9344620001 1.34146368625 ? 0.289671784381 ? -0.197112904438 ? 1.9664962073 ? -0.579268961062 ? 1.28565188921 ? 0.0795586500762 ? 0.062206065961 ? 0.0297890348992 ? 0.0984372958725 ? -0.0364773701379 ? 0.0628262710163 ? -0.254570888661 ? 0.206169285498 ? -0.429556343072 ? -0.787045515 ? 0.0388249379536 ? -0.625511116943 ? -0.159155918689 ? -0.802797805427 ? -0.00102352627757 ? 15 'X-RAY DIFFRACTION' ? refined -48.9951114289 45.0428902999 -14.5013573789 0.83229513682 ? 0.236962427893 ? -0.226038478293 ? 0.849122617537 ? 0.101915020162 ? 0.554119877948 ? 2.77185083631 ? -1.73812783539 ? 1.13406337783 ? 2.94929997262 ? 0.527707332596 ? 5.3077139099 ? -0.371162730238 ? 0.20967526477 ? 0.722145444609 ? 0.20217826666 ? -0.549416604038 ? -0.38024927318 ? -0.870554657381 ? -1.06604416556 ? -1.72515303929 ? 16 'X-RAY DIFFRACTION' ? refined -20.7143503187 56.5420870943 -14.0028768597 1.33721360843 ? -0.0917250076528 ? -0.493217869577 ? 0.987164527007 ? 0.108727809894 ? 0.851733169318 ? 1.7533241974 ? -2.05273098702 ? -1.41093490065 ? 2.39284924167 ? 1.65427893926 ? 1.14636237553 ? -0.429599071936 ? 0.0243724233752 ? -0.376651375774 ? 0.716712193767 ? 0.293053917152 ? 0.408305876874 ? 0.765942161402 ? 0.535568243225 ? -0.662734574845 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 12 ? A ? A 21 ? ? '(chain A and resid 12:21)' 2 'X-RAY DIFFRACTION' 2 A ? A 22 ? A ? A 27 ? ? '(chain A and resid 22:27)' 3 'X-RAY DIFFRACTION' 3 A ? A 32 ? A ? A 41 ? ? '(chain A and resid 32:41)' 4 'X-RAY DIFFRACTION' 4 A ? A 42 ? A ? A 51 ? ? '(chain A and resid 42:51)' 5 'X-RAY DIFFRACTION' 5 A ? A 52 ? A ? A 63 ? ? '(chain A and resid 52:63)' 6 'X-RAY DIFFRACTION' 6 A ? A 64 ? A ? A 79 ? ? '(chain A and resid 64:79)' 7 'X-RAY DIFFRACTION' 7 A ? A 80 ? A ? A 84 ? ? '(chain A and resid 80:84)' 8 'X-RAY DIFFRACTION' 8 A ? A 85 ? A ? A 90 ? ? '(chain A and resid 85:90)' 9 'X-RAY DIFFRACTION' 9 B ? B 9 ? B ? B 13 ? ? '(chain B and resid 9:13)' 10 'X-RAY DIFFRACTION' 10 B ? B 14 ? B ? B 20 ? ? '(chain B and resid 14:20)' 11 'X-RAY DIFFRACTION' 11 B ? B 21 ? B ? B 39 ? ? '(chain B and resid 21:39)' 12 'X-RAY DIFFRACTION' 12 B ? B 40 ? B ? B 52 ? ? '(chain B and resid 40:52)' 13 'X-RAY DIFFRACTION' 13 B ? B 53 ? B ? B 64 ? ? '(chain B and resid 53:64)' 14 'X-RAY DIFFRACTION' 14 B ? B 65 ? B ? B 76 ? ? '(chain B and resid 65:76)' 15 'X-RAY DIFFRACTION' 15 B ? B 77 ? B ? B 83 ? ? '(chain B and resid 77:83)' 16 'X-RAY DIFFRACTION' 16 B ? B 84 ? B ? B 89 ? ? '(chain B and resid 84:89)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487+SVN 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8F4O _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H61 A A 41 ? ? HN52 A IRI 116 ? ? 1.13 2 1 O6 B G 42 ? ? HN22 B IRI 106 ? ? 1.39 3 1 O6 A G 82 ? ? HN62 A IRI 112 ? A 1.41 4 1 OP2 A A 75 ? ? HN52 A IRI 103 ? B 1.45 5 1 OP2 A A 43 ? ? HN41 A IRI 107 ? ? 1.48 6 1 O6 A G 40 ? ? HN42 A IRI 107 ? ? 1.58 7 1 H1 A G 40 ? ? OP2 A A 43 ? ? 1.60 8 1 O6 B G 65 ? ? H42 B C 74 ? ? 1.60 9 1 O6 A G 37 ? ? N3 A IRI 113 ? ? 2.02 10 1 "O2'" A G 21 ? A N2 A IRI 115 ? ? 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A U 20 ? ? P A G 21 ? B OP2 A G 21 ? B 80.89 105.20 -24.31 2.20 Y 2 1 "O3'" A U 20 ? ? P A G 21 ? B OP1 A G 21 ? B 85.97 105.20 -19.23 2.20 Y 3 1 OP1 A G 21 ? B P A G 21 ? B OP2 A G 21 ? B 130.29 119.60 10.69 1.50 N 4 1 N1 A C 77 ? ? C2 A C 77 ? ? O2 A C 77 ? ? 122.58 118.90 3.68 0.60 N 5 1 N3 A C 77 ? ? C2 A C 77 ? ? O2 A C 77 ? ? 117.50 121.90 -4.40 0.70 N 6 1 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 114.96 108.50 6.46 0.70 N 7 1 C6 B C 74 ? ? N1 B C 74 ? ? C2 B C 74 ? ? 116.89 120.30 -3.41 0.40 N 8 1 C5 B C 74 ? ? C6 B C 74 ? ? N1 B C 74 ? ? 124.57 121.00 3.57 0.50 N 9 1 C2 B C 74 ? ? N1 B C 74 ? ? "C1'" B C 74 ? ? 125.69 118.80 6.89 1.10 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 32 ? P ? A U 24 P 2 1 Y 1 A U 32 ? OP1 ? A U 24 OP1 3 1 Y 1 A U 32 ? OP2 ? A U 24 OP2 4 1 Y 1 A U 32 ? N1 ? A U 24 N1 5 1 Y 1 A U 32 ? C2 ? A U 24 C2 6 1 Y 1 A U 32 ? O2 ? A U 24 O2 7 1 Y 1 A U 32 ? N3 ? A U 24 N3 8 1 Y 1 A U 32 ? C4 ? A U 24 C4 9 1 Y 1 A U 32 ? O4 ? A U 24 O4 10 1 Y 1 A U 32 ? C5 ? A U 24 C5 11 1 Y 1 A U 32 ? C6 ? A U 24 C6 12 1 Y 1 A U 52 ? N1 ? A U 44 N1 13 1 Y 1 A U 52 ? C2 ? A U 44 C2 14 1 Y 1 A U 52 ? O2 ? A U 44 O2 15 1 Y 1 A U 52 ? N3 ? A U 44 N3 16 1 Y 1 A U 52 ? C4 ? A U 44 C4 17 1 Y 1 A U 52 ? O4 ? A U 44 O4 18 1 Y 1 A U 52 ? C5 ? A U 44 C5 19 1 Y 1 A U 52 ? C6 ? A U 44 C6 20 1 Y 0 A U 71 ? N1 ? A U 63 N1 21 1 Y 0 A U 71 ? C2 ? A U 63 C2 22 1 Y 0 A U 71 ? O2 ? A U 63 O2 23 1 Y 0 A U 71 ? N3 ? A U 63 N3 24 1 Y 0 A U 71 ? C4 ? A U 63 C4 25 1 Y 0 A U 71 ? O4 ? A U 63 O4 26 1 Y 0 A U 71 ? C5 ? A U 63 C5 27 1 Y 0 A U 71 ? C6 ? A U 63 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 9 ? A G 1 2 1 Y 1 A C 10 ? A C 2 3 1 Y 1 A G 11 ? A G 3 4 1 Y 1 A U 28 ? A U 20 5 1 Y 1 A G 29 ? A G 21 6 1 Y 1 A C 30 ? A C 22 7 1 Y 1 A G 31 ? A G 23 8 1 Y 1 A A 53 ? A A 45 9 1 Y 1 A U 54 ? A U 46 10 1 Y 1 A C 55 ? A C 47 11 1 Y 1 A A 91 ? A A 83 12 1 Y 1 B C 22 ? B C 14 13 1 Y 1 B C 23 ? B C 15 14 1 Y 1 B C 24 ? B C 16 15 1 Y 1 B U 25 ? B U 17 16 1 Y 1 B U 26 ? B U 18 17 1 Y 1 B C 27 ? B C 19 18 1 Y 1 B U 28 ? B U 20 19 1 Y 1 B G 29 ? B G 21 20 1 Y 1 B C 30 ? B C 22 21 1 Y 1 B G 31 ? B G 23 22 1 Y 1 B U 32 ? B U 24 23 1 Y 1 B G 33 ? B G 25 24 1 Y 1 B U 68 ? B U 60 25 1 Y 1 B A 69 ? B A 61 26 1 Y 1 B A 70 ? B A 62 27 1 Y 1 B U 71 ? B U 63 28 1 Y 1 B C 90 ? B C 82 29 1 Y 1 B A 91 ? B A 83 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 IRI IR IR N N 111 IRI N1 N N N 112 IRI N2 N N N 113 IRI N3 N N N 114 IRI N4 N N N 115 IRI N5 N N N 116 IRI N6 N N N 117 IRI HN11 H N N 118 IRI HN12 H N N 119 IRI HN13 H N N 120 IRI HN21 H N N 121 IRI HN22 H N N 122 IRI HN23 H N N 123 IRI HN31 H N N 124 IRI HN32 H N N 125 IRI HN33 H N N 126 IRI HN41 H N N 127 IRI HN42 H N N 128 IRI HN43 H N N 129 IRI HN51 H N N 130 IRI HN52 H N N 131 IRI HN53 H N N 132 IRI HN61 H N N 133 IRI HN62 H N N 134 IRI HN63 H N N 135 PG4 O1 O N N 136 PG4 C1 C N N 137 PG4 C2 C N N 138 PG4 O2 O N N 139 PG4 C3 C N N 140 PG4 C4 C N N 141 PG4 O3 O N N 142 PG4 C5 C N N 143 PG4 C6 C N N 144 PG4 O4 O N N 145 PG4 C7 C N N 146 PG4 C8 C N N 147 PG4 O5 O N N 148 PG4 HO1 H N N 149 PG4 H11 H N N 150 PG4 H12 H N N 151 PG4 H21 H N N 152 PG4 H22 H N N 153 PG4 H31 H N N 154 PG4 H32 H N N 155 PG4 H41 H N N 156 PG4 H42 H N N 157 PG4 H51 H N N 158 PG4 H52 H N N 159 PG4 H61 H N N 160 PG4 H62 H N N 161 PG4 H71 H N N 162 PG4 H72 H N N 163 PG4 H81 H N N 164 PG4 H82 H N N 165 PG4 HO5 H N N 166 PGE C1 C N N 167 PGE O1 O N N 168 PGE C2 C N N 169 PGE O2 O N N 170 PGE C3 C N N 171 PGE C4 C N N 172 PGE O4 O N N 173 PGE C6 C N N 174 PGE C5 C N N 175 PGE O3 O N N 176 PGE H1 H N N 177 PGE H12 H N N 178 PGE HO1 H N N 179 PGE H2 H N N 180 PGE H22 H N N 181 PGE H3 H N N 182 PGE H32 H N N 183 PGE H4 H N N 184 PGE H42 H N N 185 PGE HO4 H N N 186 PGE H6 H N N 187 PGE H62 H N N 188 PGE H5 H N N 189 PGE H52 H N N 190 U OP3 O N N 191 U P P N N 192 U OP1 O N N 193 U OP2 O N N 194 U "O5'" O N N 195 U "C5'" C N N 196 U "C4'" C N R 197 U "O4'" O N N 198 U "C3'" C N S 199 U "O3'" O N N 200 U "C2'" C N R 201 U "O2'" O N N 202 U "C1'" C N R 203 U N1 N N N 204 U C2 C N N 205 U O2 O N N 206 U N3 N N N 207 U C4 C N N 208 U O4 O N N 209 U C5 C N N 210 U C6 C N N 211 U HOP3 H N N 212 U HOP2 H N N 213 U "H5'" H N N 214 U "H5''" H N N 215 U "H4'" H N N 216 U "H3'" H N N 217 U "HO3'" H N N 218 U "H2'" H N N 219 U "HO2'" H N N 220 U "H1'" H N N 221 U H3 H N N 222 U H5 H N N 223 U H6 H N N 224 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 IRI IR N1 sing N N 116 IRI IR N2 sing N N 117 IRI IR N3 sing N N 118 IRI IR N4 sing N N 119 IRI IR N5 sing N N 120 IRI IR N6 sing N N 121 IRI N1 HN11 sing N N 122 IRI N1 HN12 sing N N 123 IRI N1 HN13 sing N N 124 IRI N2 HN21 sing N N 125 IRI N2 HN22 sing N N 126 IRI N2 HN23 sing N N 127 IRI N3 HN31 sing N N 128 IRI N3 HN32 sing N N 129 IRI N3 HN33 sing N N 130 IRI N4 HN41 sing N N 131 IRI N4 HN42 sing N N 132 IRI N4 HN43 sing N N 133 IRI N5 HN51 sing N N 134 IRI N5 HN52 sing N N 135 IRI N5 HN53 sing N N 136 IRI N6 HN61 sing N N 137 IRI N6 HN62 sing N N 138 IRI N6 HN63 sing N N 139 PG4 O1 C1 sing N N 140 PG4 O1 HO1 sing N N 141 PG4 C1 C2 sing N N 142 PG4 C1 H11 sing N N 143 PG4 C1 H12 sing N N 144 PG4 C2 O2 sing N N 145 PG4 C2 H21 sing N N 146 PG4 C2 H22 sing N N 147 PG4 O2 C3 sing N N 148 PG4 C3 C4 sing N N 149 PG4 C3 H31 sing N N 150 PG4 C3 H32 sing N N 151 PG4 C4 O3 sing N N 152 PG4 C4 H41 sing N N 153 PG4 C4 H42 sing N N 154 PG4 O3 C5 sing N N 155 PG4 C5 C6 sing N N 156 PG4 C5 H51 sing N N 157 PG4 C5 H52 sing N N 158 PG4 C6 O4 sing N N 159 PG4 C6 H61 sing N N 160 PG4 C6 H62 sing N N 161 PG4 O4 C7 sing N N 162 PG4 C7 C8 sing N N 163 PG4 C7 H71 sing N N 164 PG4 C7 H72 sing N N 165 PG4 C8 O5 sing N N 166 PG4 C8 H81 sing N N 167 PG4 C8 H82 sing N N 168 PG4 O5 HO5 sing N N 169 PGE C1 O1 sing N N 170 PGE C1 C2 sing N N 171 PGE C1 H1 sing N N 172 PGE C1 H12 sing N N 173 PGE O1 HO1 sing N N 174 PGE C2 O2 sing N N 175 PGE C2 H2 sing N N 176 PGE C2 H22 sing N N 177 PGE O2 C3 sing N N 178 PGE C3 C4 sing N N 179 PGE C3 H3 sing N N 180 PGE C3 H32 sing N N 181 PGE C4 O3 sing N N 182 PGE C4 H4 sing N N 183 PGE C4 H42 sing N N 184 PGE O4 C6 sing N N 185 PGE O4 HO4 sing N N 186 PGE C6 C5 sing N N 187 PGE C6 H6 sing N N 188 PGE C6 H62 sing N N 189 PGE C5 O3 sing N N 190 PGE C5 H5 sing N N 191 PGE C5 H52 sing N N 192 U OP3 P sing N N 193 U OP3 HOP3 sing N N 194 U P OP1 doub N N 195 U P OP2 sing N N 196 U P "O5'" sing N N 197 U OP2 HOP2 sing N N 198 U "O5'" "C5'" sing N N 199 U "C5'" "C4'" sing N N 200 U "C5'" "H5'" sing N N 201 U "C5'" "H5''" sing N N 202 U "C4'" "O4'" sing N N 203 U "C4'" "C3'" sing N N 204 U "C4'" "H4'" sing N N 205 U "O4'" "C1'" sing N N 206 U "C3'" "O3'" sing N N 207 U "C3'" "C2'" sing N N 208 U "C3'" "H3'" sing N N 209 U "O3'" "HO3'" sing N N 210 U "C2'" "O2'" sing N N 211 U "C2'" "C1'" sing N N 212 U "C2'" "H2'" sing N N 213 U "O2'" "HO2'" sing N N 214 U "C1'" N1 sing N N 215 U "C1'" "H1'" sing N N 216 U N1 C2 sing N N 217 U N1 C6 sing N N 218 U C2 O2 doub N N 219 U C2 N3 sing N N 220 U N3 C4 sing N N 221 U N3 H3 sing N N 222 U C4 O4 doub N N 223 U C4 C5 sing N N 224 U C5 C6 doub N N 225 U C5 H5 sing N N 226 U C6 H6 sing N N 227 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8F4O 'double helix' 8F4O 'a-form double helix' 8F4O 'hairpin loop' 8F4O 'bulge loop' 8F4O 'mismatched base pair' 8F4O 'internal loop' 8F4O 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 4 1_555 A U 79 1_555 0.213 -0.379 -0.320 2.081 -12.244 -2.967 1 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.648 -0.462 -0.263 -1.839 -16.622 -1.380 2 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 -0.022 -0.283 -0.249 -8.143 0.970 4.264 3 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 0.204 -0.493 0.185 6.153 -8.341 -4.814 4 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 0.040 0.006 -0.186 -7.472 -16.746 1.957 5 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.279 -0.182 -0.010 -11.163 -16.677 0.448 6 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.306 -0.232 0.471 -10.630 -15.900 -3.108 7 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.305 1.502 0.559 -3.716 -5.113 -20.032 8 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 -0.144 0.158 0.323 6.784 12.767 0.599 9 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A G 25 1_555 A U 18 1_555 -2.033 -0.466 0.220 1.137 -23.549 11.599 10 A_G33:U26_A A 33 ? A 26 ? 28 1 1 A A 26 1_555 A U 17 1_555 0.275 0.004 0.773 -2.246 -18.603 6.826 11 A_A34:U25_A A 34 ? A 25 ? 20 1 1 A A 27 1_555 A C 16 1_555 -0.540 -0.275 0.761 2.025 -14.971 -12.068 12 A_A35:C24_A A 35 ? A 24 ? ? ? 1 A G 28 1_555 A C 15 1_555 -0.213 -0.445 0.380 -0.843 -9.928 -7.491 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 0.094 -0.203 0.383 -13.825 -19.287 -3.421 14 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 -0.628 0.358 0.468 -8.136 -6.060 6.001 15 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 3.924 -1.829 0.225 -1.292 4.060 -100.732 16 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 48 1_555 A G 75 1_555 -6.739 -3.799 0.405 12.786 -12.286 -9.852 17 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 -0.053 -0.015 -0.665 10.087 -0.801 0.412 18 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 -0.114 0.051 0.267 -11.837 4.309 0.147 19 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 -0.293 0.002 -0.535 0.186 4.008 6.547 20 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 B C 55 1_555 0.168 0.076 -0.860 -25.825 -15.699 0.422 21 A_G60:C63_B A 60 ? B 63 ? 19 1 1 A A 53 1_555 B U 54 1_555 -0.242 -0.202 -0.823 -15.927 -17.204 6.902 22 A_A61:U62_B A 61 ? B 62 ? 20 1 1 A U 54 1_555 B A 53 1_555 -0.185 -0.048 0.237 -2.454 3.053 1.726 23 A_U62:A61_B A 62 ? B 61 ? 20 1 1 A C 55 1_555 B G 52 1_555 -0.018 -0.296 -0.595 13.502 -4.953 -2.114 24 A_C63:G60_B A 63 ? B 60 ? 19 1 1 B A 72 1_555 B U 51 1_555 0.034 -0.180 -0.331 12.155 -9.148 0.390 25 B_A80:U59_B B 80 ? B 59 ? 20 1 1 B G 73 1_555 B C 50 1_555 -0.191 -0.264 0.340 4.914 -8.636 2.221 26 B_G81:C58_B B 81 ? B 58 ? 19 1 1 B G 74 1_555 B C 49 1_555 0.488 -0.295 -0.189 -4.691 -5.121 -2.042 27 B_G82:C57_B B 82 ? B 57 ? 19 1 1 B G 75 1_555 B A 48 1_555 6.818 -4.305 0.441 -5.305 -13.021 -8.022 28 B_G83:A56_B B 83 ? B 56 ? 11 6 1 B A 76 1_555 B A 45 1_555 -5.768 -2.887 0.775 20.842 6.103 -62.120 29 B_A84:A53_B B 84 ? B 53 ? ? 10 1 A C 65 1_555 A G 58 1_555 0.619 -0.062 -0.388 20.030 -18.944 3.931 30 A_C73:G66_A A 73 ? A 66 ? 19 1 1 A C 66 1_555 A G 57 1_555 0.594 -0.207 -0.069 7.928 -14.794 5.853 31 A_C74:G65_A A 74 ? A 65 ? 19 1 1 A A 67 1_555 A U 56 1_555 0.400 0.111 -0.001 3.826 -14.760 2.898 32 A_A75:U64_A A 75 ? A 64 ? 20 1 1 A G 68 1_555 B U 71 1_555 -2.008 -1.147 1.324 1.331 1.197 4.086 33 A_G76:U79_B A 76 ? B 79 ? 28 1 1 A C 69 1_555 B C 69 1_555 -3.299 0.561 1.156 -23.848 0.028 -85.540 34 A_C77:C77_B A 77 ? B 77 ? ? ? 1 A U 71 1_555 B G 68 1_555 3.561 -1.513 2.331 -23.495 5.433 1.063 35 A_U79:G76_B A 79 ? B 76 ? 28 1 1 B U 56 1_555 B A 67 1_555 -0.127 -0.063 0.222 -18.582 -3.328 -5.766 36 B_U64:A75_B B 64 ? B 75 ? 20 1 1 B G 57 1_555 B C 66 1_555 0.155 -0.470 0.156 -10.368 -7.846 -5.496 37 B_G65:C74_B B 65 ? B 74 ? 19 1 1 B G 58 1_555 B C 65 1_555 -0.100 -0.376 0.243 -0.991 -14.737 -10.292 38 B_G66:C73_B B 66 ? B 73 ? 19 1 1 B C 2 1_555 B G 81 1_555 0.260 -0.173 0.281 3.856 5.045 -0.669 39 B_C10:G89_B B 10 ? B 89 ? 19 1 1 B G 3 1_555 B C 80 1_555 -0.571 -0.174 -0.581 4.212 -8.945 -4.699 40 B_G11:C88_B B 11 ? B 88 ? 19 1 1 B A 4 1_555 B U 79 1_555 -0.031 -0.058 -0.081 10.813 -7.156 -12.669 41 B_A12:U87_B B 12 ? B 87 ? 20 1 1 B C 5 1_555 B G 78 1_555 -0.057 0.059 0.013 -8.442 -5.014 -9.364 42 B_C13:G86_B B 13 ? B 86 ? 19 1 1 B U 6 1_555 B A 77 1_555 0.190 -0.201 -0.369 -17.975 -7.454 4.959 43 B_U14:A85_B B 14 ? B 85 ? 20 1 1 B C 7 1_555 B G 43 1_555 0.102 -0.336 0.428 -1.702 -0.401 -3.550 44 B_C15:G51_B B 15 ? B 51 ? 19 1 1 B G 8 1_555 B C 42 1_555 -0.216 -0.291 0.159 3.515 -1.283 -6.786 45 B_G16:C50_B B 16 ? B 50 ? 19 1 1 B G 9 1_555 B C 41 1_555 -0.272 -0.336 -0.555 -10.972 -9.035 -1.704 46 B_G17:C49_B B 17 ? B 49 ? 19 1 1 B G 10 1_555 B C 40 1_555 -0.003 -0.194 0.522 -10.718 -9.587 -1.934 47 B_G18:C48_B B 18 ? B 48 ? 19 1 1 B G 11 1_555 B A 39 1_555 -1.032 1.404 0.334 -9.382 -4.065 -22.548 48 B_G19:A47_B B 19 ? B 47 ? 8 1 1 B U 12 1_555 B A 37 1_555 0.399 -0.092 0.694 1.318 -15.763 2.958 49 B_U20:A45_B B 20 ? B 45 ? 20 1 1 B G 13 1_555 B C 30 1_555 -0.010 -0.300 -1.133 -11.512 -5.106 4.832 50 B_G21:C38_B B 21 ? B 38 ? 19 1 1 B A 35 1_555 B U 31 1_555 4.431 -3.731 -0.975 2.817 -6.536 79.968 51 B_A43:U39_B B 43 ? B 39 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 0.729 -1.862 3.096 2.658 2.704 36.986 -3.258 -0.813 3.001 4.248 -4.176 37.173 1 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.300 -1.009 3.254 3.730 3.760 27.866 -2.911 0.232 3.106 7.719 -7.657 28.355 2 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 0.453 -1.490 2.901 -4.442 -0.773 41.336 -2.027 -1.055 2.865 -1.091 6.270 41.570 3 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 1.080 -1.866 3.467 4.716 8.689 29.545 -5.151 -1.106 2.946 16.468 -8.938 31.121 4 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.890 -1.917 3.318 -2.861 3.361 34.166 -3.760 1.059 3.183 5.691 4.845 34.441 5 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.099 -1.524 3.035 -2.003 6.209 31.943 -3.673 -0.133 2.700 11.137 3.594 32.585 6 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.021 -1.242 3.048 2.711 -1.565 37.264 -1.745 1.923 3.017 -2.444 -4.234 37.390 7 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.289 0.228 3.377 3.012 10.854 14.190 -5.873 0.912 2.836 37.199 -10.323 18.100 8 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A G 25 1_555 A U 18 1_555 A A 26 1_555 A U 17 1_555 -0.975 -1.107 3.213 -6.129 -0.510 46.418 -1.352 0.717 3.320 -0.644 7.737 46.801 9 AA_G33A34:U25U26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A A 26 1_555 A U 17 1_555 A A 27 1_555 A C 16 1_555 -1.107 -0.981 3.021 -0.825 6.113 28.793 -3.106 2.019 2.788 12.117 1.635 29.433 10 AA_A34A35:C24U25_AA A 34 ? A 25 ? A 35 ? A 24 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 0.652 -2.264 3.201 1.201 3.602 34.301 -4.346 -0.923 2.976 6.084 -2.028 34.504 11 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 0.729 -1.675 3.176 4.430 6.591 45.799 -2.651 -0.570 2.975 8.394 -5.643 46.446 12 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 0.983 -1.129 3.053 -1.667 5.739 32.992 -2.804 -1.951 2.771 10.003 2.905 33.514 13 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.288 -1.046 3.515 5.244 9.090 73.288 -1.165 2.904 3.178 7.577 -4.371 73.931 14 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.636 -1.227 3.314 1.755 9.489 57.505 -1.757 -1.589 3.138 9.787 -1.810 58.241 15 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.347 -2.392 3.586 -6.458 14.260 31.588 -6.001 -0.350 2.348 24.410 11.055 35.166 16 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.531 -1.444 3.019 6.845 -8.594 28.716 -1.029 0.351 3.340 -16.581 -13.207 30.705 17 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 B C 55 1_555 1.025 -0.980 3.534 6.276 32.172 39.891 -3.415 -0.741 2.320 40.013 -7.806 51.202 18 AA_U59G60:C63A80_BA A 59 ? A 80 ? A 60 ? B 63 ? 1 A G 52 1_555 B C 55 1_555 A A 53 1_555 B U 54 1_555 -0.229 -0.492 2.922 -3.192 12.742 30.350 -2.748 -0.069 2.529 23.030 5.768 33.009 19 AA_G60A61:U62C63_BB A 60 ? B 63 ? A 61 ? B 62 ? 1 A A 53 1_555 B U 54 1_555 A U 54 1_555 B A 53 1_555 -0.018 -0.525 3.227 -10.981 12.463 32.587 -2.505 -1.439 2.724 20.626 18.172 36.473 20 AA_A61U62:A61U62_BB A 61 ? B 62 ? A 62 ? B 61 ? 1 A U 54 1_555 B A 53 1_555 A C 55 1_555 B G 52 1_555 0.131 -1.034 2.787 6.549 6.850 29.933 -2.974 0.772 2.469 12.863 -12.298 31.364 21 AA_U62C63:G60A61_BB A 62 ? B 61 ? A 63 ? B 60 ? 1 A C 55 1_555 B G 52 1_555 B A 72 1_555 B U 51 1_555 -1.358 -0.458 3.437 -0.174 15.154 38.188 -2.361 1.920 3.054 22.128 0.254 40.980 22 AB_C63A80:U59G60_BB A 63 ? B 60 ? B 80 ? B 59 ? 1 B A 72 1_555 B U 51 1_555 B G 73 1_555 B C 50 1_555 0.084 -1.123 3.268 -10.075 -0.962 31.757 -1.800 -1.831 3.129 -1.704 17.853 33.291 23 BB_A80G81:C58U59_BB B 80 ? B 59 ? B 81 ? B 58 ? 1 B G 73 1_555 B C 50 1_555 B G 74 1_555 B C 49 1_555 0.416 -1.819 3.362 3.872 6.994 35.560 -3.866 -0.137 2.990 11.276 -6.242 36.419 24 BB_G81G82:C57C58_BB B 81 ? B 58 ? B 82 ? B 57 ? 1 B G 74 1_555 B C 49 1_555 B G 75 1_555 B A 48 1_555 -1.001 -0.878 3.294 1.529 8.450 58.008 -1.331 1.102 3.125 8.661 -1.567 58.586 25 BB_G82G83:A56C57_BB B 82 ? B 57 ? B 83 ? B 56 ? 1 B G 75 1_555 B A 48 1_555 B A 76 1_555 B A 45 1_555 -0.235 0.979 2.897 16.375 -10.167 9.206 5.783 5.693 0.610 -34.130 -54.972 21.341 26 BB_G83A84:A53A56_BB B 83 ? B 56 ? B 84 ? B 53 ? 1 A C 65 1_555 A G 58 1_555 A C 66 1_555 A G 57 1_555 0.049 -1.588 3.709 2.296 2.854 33.372 -3.270 0.335 3.560 4.950 -3.983 33.567 27 AA_C73C74:G65G66_AA A 73 ? A 66 ? A 74 ? A 65 ? 1 A C 66 1_555 A G 57 1_555 A A 67 1_555 A U 56 1_555 0.013 -1.243 3.109 1.832 12.714 32.558 -3.770 0.223 2.464 21.655 -3.121 34.937 28 AA_C74A75:U64G65_AA A 74 ? A 65 ? A 75 ? A 64 ? 1 A A 67 1_555 A U 56 1_555 A G 68 1_555 B U 71 1_555 3.410 -0.466 2.773 -6.588 4.966 41.680 -1.028 -5.219 2.167 6.898 9.151 42.453 29 AA_A75G76:U79U64_BA A 75 ? A 64 ? A 76 ? B 79 ? 1 A C 69 1_555 B C 69 1_555 A U 71 1_555 B G 68 1_555 1.215 -3.296 3.137 -7.566 -8.018 88.297 -2.190 -1.023 3.276 -5.737 5.414 88.841 30 AA_C77U79:G76C77_BB A 77 ? B 77 ? A 79 ? B 76 ? 1 A U 71 1_555 B G 68 1_555 B U 56 1_555 B A 67 1_555 -3.866 -0.652 2.370 2.359 -15.456 40.225 0.228 5.441 2.243 -21.516 -3.284 43.039 31 AB_U79U64:A75G76_BB A 79 ? B 76 ? B 64 ? B 75 ? 1 B U 56 1_555 B A 67 1_555 B G 57 1_555 B C 66 1_555 -0.275 -2.013 2.953 3.899 2.802 31.112 -4.168 1.141 2.713 5.185 -7.216 31.472 32 BB_U64G65:C74A75_BB B 64 ? B 75 ? B 65 ? B 74 ? 1 B G 57 1_555 B C 66 1_555 B G 58 1_555 B C 65 1_555 0.257 -1.727 3.110 3.282 -4.292 24.885 -2.687 0.358 3.361 -9.814 -7.503 25.456 33 BB_G65G66:C73C74_BB B 65 ? B 74 ? B 66 ? B 73 ? 1 B C 2 1_555 B G 81 1_555 B G 3 1_555 B C 80 1_555 0.467 -1.177 3.143 4.922 19.022 28.833 -4.508 -0.124 2.054 33.710 -8.722 34.774 34 BB_C10G11:C88G89_BB B 10 ? B 89 ? B 11 ? B 88 ? 1 B G 3 1_555 B C 80 1_555 B A 4 1_555 B U 79 1_555 -0.237 -1.410 2.898 -7.982 7.511 37.213 -2.912 -0.478 2.572 11.469 12.188 38.738 35 BB_G11A12:U87C88_BB B 11 ? B 88 ? B 12 ? B 87 ? 1 B A 4 1_555 B U 79 1_555 B C 5 1_555 B G 78 1_555 0.033 -2.132 3.718 1.873 3.412 41.598 -3.389 0.172 3.538 4.792 -2.631 41.771 36 BB_A12C13:G86U87_BB B 12 ? B 87 ? B 13 ? B 86 ? 1 B C 5 1_555 B G 78 1_555 B U 6 1_555 B A 77 1_555 0.875 -0.935 3.323 8.272 2.416 36.154 -1.802 -0.228 3.368 3.827 -13.101 37.134 37 BB_C13U14:A85G86_BB B 13 ? B 86 ? B 14 ? B 85 ? 1 B U 6 1_555 B A 77 1_555 B C 7 1_555 B G 43 1_555 0.170 -1.781 2.732 -5.557 10.002 28.339 -4.860 -1.143 1.939 19.456 10.809 30.518 38 BB_U14C15:G51A85_BB B 14 ? B 85 ? B 15 ? B 51 ? 1 B C 7 1_555 B G 43 1_555 B G 8 1_555 B C 42 1_555 0.244 -2.014 2.881 1.211 -2.640 35.826 -2.923 -0.239 3.024 -4.282 -1.965 35.940 39 BB_C15G16:C50G51_BB B 15 ? B 51 ? B 16 ? B 50 ? 1 B G 8 1_555 B C 42 1_555 B G 9 1_555 B C 41 1_555 -0.332 -1.999 3.550 4.488 5.441 35.303 -4.038 1.199 3.153 8.862 -7.311 35.978 40 BB_G16G17:C49C50_BB B 16 ? B 50 ? B 17 ? B 49 ? 1 B G 9 1_555 B C 41 1_555 B G 10 1_555 B C 40 1_555 0.376 -1.771 3.418 0.800 -0.254 33.508 -3.026 -0.514 3.439 -0.441 -1.387 33.518 41 BB_G17G18:C48C49_BB B 17 ? B 49 ? B 18 ? B 48 ? 1 B G 10 1_555 B C 40 1_555 B G 11 1_555 B A 39 1_555 -0.923 -1.478 3.085 5.598 -2.469 29.296 -2.385 2.872 2.973 -4.815 -10.918 29.914 42 BB_G18G19:A47C48_BB B 18 ? B 48 ? B 19 ? B 47 ? 1 B G 11 1_555 B A 39 1_555 B U 12 1_555 B A 37 1_555 -0.008 0.127 3.221 1.151 9.913 23.476 -2.534 0.347 3.019 23.071 -2.679 25.482 43 BB_G19U20:A45A47_BB B 19 ? B 47 ? B 20 ? B 45 ? 1 B G 13 1_555 B C 30 1_555 B A 35 1_555 B U 31 1_555 2.534 1.105 2.992 0.576 1.947 79.955 0.812 -1.958 3.029 1.515 -0.448 79.976 44 BB_G21A43:U39C38_BB B 21 ? B 38 ? B 43 ? B 39 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM HEXAMMINE ION' IRI 3 'TRIETHYLENE GLYCOL' PGE 4 'TETRAETHYLENE GLYCOL' PG4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4nyg _pdbx_initial_refinement_model.details ;The phasing was accomplished using MR-SAD, where modifications of 4NYG were used in conjunction with SAD data to generate initial phases. ; # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #