HEADER TRANSFERASE 11-NOV-22 8F4Y TITLE CRYSTAL STRUCTURE OF SARS-COV-2 2'-O-METHYLTRANSFERASE IN COMPLEX WITH TITLE 2 COMPOUND 5A COVALENTLY BOUND TO NSP16 AND NSP10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 16, NSP16; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NSP10, GROWTH FACTOR-LIKE PEPTIDE, GFL; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_TAXID: 2697049; SOURCE 16 GENE: REP, 1A-1B; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS CSBID, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL BIOLOGY OF KEYWDS 2 INFECTIOUS DISEASES, NSP16-10, 2'-O-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,J.S.BRUNZELLE,M.ROSAS-LEMUS,O.KIRYUKHINA, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES AUTHOR 3 (CSBID) REVDAT 2 25-OCT-23 8F4Y 1 JRNL REVDAT 1 18-OCT-23 8F4Y 0 JRNL AUTH N.L.INNISS,J.KOZIC,F.LI,M.ROSAS-LEMUS,G.MINASOV,J.RYBACEK, JRNL AUTH 2 Y.ZHU,R.POHL,L.SHUVALOVA,L.RULISEK,J.S.BRUNZELLE, JRNL AUTH 3 L.BEDNAROVA,M.STEFEK,J.M.KORMANIK,E.ANDRIS,J.SEBESTIK, JRNL AUTH 4 A.S.M.LI,P.J.BROWN,U.SCHMITZ,K.SAIKATENDU,E.CHANG,R.NENCKA, JRNL AUTH 5 M.VEDADI,K.J.F.SATCHELL JRNL TITL DISCOVERY OF A DRUGGABLE, CRYPTIC POCKET IN SARS-COV-2 NSP16 JRNL TITL 2 USING ALLOSTERIC INHIBITORS. JRNL REF ACS INFECT DIS. V. 9 1918 2023 JRNL REFN ESSN 2373-8227 JRNL PMID 37728236 JRNL DOI 10.1021/ACSINFECDIS.3C00203 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0350 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3541 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3096 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4803 ; 1.164 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7244 ; 2.486 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 3.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 4.294 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ; 8.422 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4052 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 700 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6799 A 6827 REMARK 3 ORIGIN FOR THE GROUP (A): 94.8760 38.5520 34.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.1852 T22: 0.0387 REMARK 3 T33: 0.1188 T12: -0.0077 REMARK 3 T13: -0.0080 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 3.0351 L22: 1.2802 REMARK 3 L33: 2.1764 L12: 0.1598 REMARK 3 L13: 0.2086 L23: 0.6992 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.1732 S13: 0.3822 REMARK 3 S21: 0.1532 S22: 0.0243 S23: -0.0123 REMARK 3 S31: -0.0258 S32: 0.1466 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6828 A 6926 REMARK 3 ORIGIN FOR THE GROUP (A): 87.1200 21.0270 18.6810 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.0340 REMARK 3 T33: 0.0232 T12: -0.0104 REMARK 3 T13: -0.0193 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.7614 L22: 1.7873 REMARK 3 L33: 1.6776 L12: -0.2333 REMARK 3 L13: -0.0587 L23: 0.3168 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0281 S13: -0.1320 REMARK 3 S21: -0.1441 S22: 0.0489 S23: 0.1325 REMARK 3 S31: 0.3093 S32: -0.1030 S33: -0.0572 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6927 A 7042 REMARK 3 ORIGIN FOR THE GROUP (A): 96.8080 26.5770 30.5250 REMARK 3 T TENSOR REMARK 3 T11: 0.2445 T22: 0.0997 REMARK 3 T33: 0.0662 T12: 0.0402 REMARK 3 T13: -0.0156 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.7929 L22: 1.3464 REMARK 3 L33: 2.1326 L12: 0.3913 REMARK 3 L13: 0.1663 L23: 0.3574 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.1366 S13: 0.0741 REMARK 3 S21: 0.1548 S22: 0.0770 S23: -0.1681 REMARK 3 S31: 0.2752 S32: 0.1941 S33: -0.0788 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7043 A 7061 REMARK 3 ORIGIN FOR THE GROUP (A): 94.3820 29.3050 8.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.0751 REMARK 3 T33: 0.0161 T12: -0.0048 REMARK 3 T13: 0.0071 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 12.4008 L22: 3.4421 REMARK 3 L33: 2.2026 L12: -5.2293 REMARK 3 L13: -4.3934 L23: 1.9615 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.2228 S13: 0.4387 REMARK 3 S21: -0.2059 S22: 0.1587 S23: -0.1814 REMARK 3 S31: 0.0405 S32: 0.0350 S33: -0.1611 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7062 A 7096 REMARK 3 ORIGIN FOR THE GROUP (A): 104.4300 16.5920 12.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.1079 REMARK 3 T33: 0.0914 T12: 0.0479 REMARK 3 T13: 0.0824 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.9383 L22: 6.6612 REMARK 3 L33: 1.6659 L12: 1.4343 REMARK 3 L13: -0.1180 L23: -1.5914 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.1234 S13: -0.1653 REMARK 3 S21: -0.2260 S22: -0.0137 S23: -0.5260 REMARK 3 S31: 0.1901 S32: 0.2975 S33: 0.0184 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4276 B 4289 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5710 9.4380 16.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.2667 REMARK 3 T33: 0.3651 T12: -0.2149 REMARK 3 T13: -0.0736 T23: 0.1351 REMARK 3 L TENSOR REMARK 3 L11: 13.1150 L22: 14.2089 REMARK 3 L33: 2.6184 L12: -2.5993 REMARK 3 L13: -0.4314 L23: 6.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.2091 S12: -0.4935 S13: 0.0165 REMARK 3 S21: 0.3874 S22: 0.0155 S23: 0.6047 REMARK 3 S31: 0.2416 S32: -0.1169 S33: 0.1936 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4290 B 4332 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3150 22.7610 11.7820 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1476 REMARK 3 T33: 0.1302 T12: -0.0719 REMARK 3 T13: -0.1091 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.5669 L22: 4.6697 REMARK 3 L33: 2.3988 L12: -0.7839 REMARK 3 L13: 0.3340 L23: -0.2177 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: 0.3068 S13: -0.2465 REMARK 3 S21: -0.4054 S22: -0.0262 S23: 0.7185 REMARK 3 S31: 0.3398 S32: -0.5010 S33: -0.1157 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4333 B 4344 REMARK 3 ORIGIN FOR THE GROUP (A): 73.5660 4.6580 7.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.8409 T22: 0.1757 REMARK 3 T33: 0.5079 T12: -0.0278 REMARK 3 T13: -0.1073 T23: -0.2350 REMARK 3 L TENSOR REMARK 3 L11: 7.0701 L22: 13.8122 REMARK 3 L33: 5.1095 L12: -3.7153 REMARK 3 L13: -2.5207 L23: 8.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.3037 S13: -0.9946 REMARK 3 S21: -0.6236 S22: 0.1109 S23: 0.0879 REMARK 3 S31: -0.0339 S32: 0.0800 S33: 0.0540 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4345 B 4375 REMARK 3 ORIGIN FOR THE GROUP (A): 66.6890 19.4190 7.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.1948 REMARK 3 T33: 0.3152 T12: -0.1269 REMARK 3 T13: -0.2053 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 4.2333 L22: 5.0077 REMARK 3 L33: 2.5944 L12: -0.5187 REMARK 3 L13: -0.1220 L23: -0.7357 REMARK 3 S TENSOR REMARK 3 S11: 0.0856 S12: 0.5025 S13: -0.7086 REMARK 3 S21: -0.6239 S22: 0.0578 S23: 0.9498 REMARK 3 S31: 0.5618 S32: -0.3645 S33: -0.1433 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4376 B 4385 REMARK 3 ORIGIN FOR THE GROUP (A): 60.5050 23.1340 -1.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.3573 REMARK 3 T33: 0.2819 T12: -0.0425 REMARK 3 T13: -0.2320 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 9.2426 L22: 11.3438 REMARK 3 L33: 11.2235 L12: -4.6090 REMARK 3 L13: 6.2968 L23: 4.4208 REMARK 3 S TENSOR REMARK 3 S11: 0.5030 S12: 0.5869 S13: -1.2622 REMARK 3 S21: -0.7155 S22: -0.1741 S23: 1.0812 REMARK 3 S31: -0.2879 S32: 0.3127 S33: -0.3289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8F4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12713 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W4H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 3.83 MG/ML (NSP10/NSP16 1:1), REMARK 280 0.15M SODIUM CHLORIDE, 0.01M TRIS PH 7.5 , 5% GLYCEROL; SCREEN: REMARK 280 ANIONS (B2), 0.1M HEPES PH 7.5, 1.25M SODIUM ACETATE; SOAKS: REMARK 280 COMPOUND 5A, 24 HOURS; CRYO: 4M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.34300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.68600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.68600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.34300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 6796 REMARK 465 ASN A 6797 REMARK 465 ALA A 6798 REMARK 465 SER B 4251 REMARK 465 ASN B 4252 REMARK 465 ALA B 4253 REMARK 465 ALA B 4254 REMARK 465 GLY B 4255 REMARK 465 ASN B 4256 REMARK 465 ALA B 4257 REMARK 465 THR B 4258 REMARK 465 GLU B 4259 REMARK 465 VAL B 4260 REMARK 465 PRO B 4261 REMARK 465 ALA B 4262 REMARK 465 ASN B 4263 REMARK 465 SER B 4264 REMARK 465 THR B 4265 REMARK 465 VAL B 4266 REMARK 465 LEU B 4267 REMARK 465 SER B 4268 REMARK 465 PHE B 4269 REMARK 465 CYS B 4270 REMARK 465 ALA B 4271 REMARK 465 PHE B 4272 REMARK 465 ALA B 4273 REMARK 465 VAL B 4274 REMARK 465 ASP B 4275 REMARK 465 LEU B 4386 REMARK 465 ARG B 4387 REMARK 465 GLU B 4388 REMARK 465 PRO B 4389 REMARK 465 MET B 4390 REMARK 465 LEU B 4391 REMARK 465 GLN B 4392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A6856 55.24 -99.98 REMARK 500 ASN A7008 90.58 71.19 REMARK 500 LYS B4278 -62.22 -25.85 REMARK 500 ASP B4359 73.09 -152.68 REMARK 500 VAL B4372 -64.52 -93.48 REMARK 500 TYR B4379 45.02 -152.66 REMARK 500 ASP B4384 65.96 -104.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A7101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A6884 O REMARK 620 2 GLN A6885 O 90.3 REMARK 620 3 LEU A6887 O 93.8 102.9 REMARK 620 4 HOH A7408 O 167.8 82.6 97.4 REMARK 620 5 HOH B4529 O 88.3 146.0 111.1 92.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4327 SG REMARK 620 2 CYS B4330 SG 116.7 REMARK 620 3 HIS B4336 NE2 109.5 108.3 REMARK 620 4 CYS B4343 SG 106.9 115.0 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B4403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B4364 O REMARK 620 2 LEU B4365 O 80.1 REMARK 620 3 ASN B4367 O 74.1 89.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4370 SG REMARK 620 2 CYS B4373 SG 107.1 REMARK 620 3 CYS B4381 SG 90.6 109.1 REMARK 620 4 CYS B4383 SG 117.9 119.7 108.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-CPX52016-10 RELATED DB: TARGETTRACK DBREF 8F4Y A 6799 7096 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 8F4Y B 4254 4392 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 8F4Y SER A 6796 UNP P0DTD1 EXPRESSION TAG SEQADV 8F4Y ASN A 6797 UNP P0DTD1 EXPRESSION TAG SEQADV 8F4Y ALA A 6798 UNP P0DTD1 EXPRESSION TAG SEQADV 8F4Y SER B 4251 UNP P0DTD1 EXPRESSION TAG SEQADV 8F4Y ASN B 4252 UNP P0DTD1 EXPRESSION TAG SEQADV 8F4Y ALA B 4253 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 A 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 A 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 A 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 A 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 A 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 A 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 A 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 A 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 A 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 A 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 A 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 A 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 A 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 A 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 A 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 A 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 A 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 A 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 A 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 A 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 A 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 A 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 A 301 ASN ASN SEQRES 1 B 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 B 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 B 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 B 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 B 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 B 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 B 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 B 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 B 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 B 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 B 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN HET NA A7101 1 HET XDU A7102 21 HET XE0 A7103 21 HET FMT A7104 3 HET FMT A7105 3 HET FMT A7106 3 HET FMT A7107 3 HET FMT A7108 3 HET FMT A7109 3 HET FMT A7110 3 HET FMT A7111 3 HET FMT A7112 3 HET ZN B4401 1 HET ZN B4402 1 HET NA B4403 1 HET XE0 B4404 21 HET XE0 B4405 21 HET FMT B4406 3 HETNAM NA SODIUM ION HETNAM XDU 4-[(E)-2-(2,4-DICHLOROPHENYL)ETHENYL]-6- HETNAM 2 XDU (TRIFLUOROMETHYL)PYRIMIDIN-2-OL HETNAM XE0 4-[2-(2,4-DICHLOROPHENYL)ETHYL]-6-(TRIFLUOROMETHYL) HETNAM 2 XE0 PYRIMIDIN-2-OL HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION FORMUL 3 NA 2(NA 1+) FORMUL 4 XDU C13 H7 CL2 F3 N2 O FORMUL 5 XE0 3(C13 H9 CL2 F3 N2 O) FORMUL 6 FMT 10(C H2 O2) FORMUL 15 ZN 2(ZN 2+) FORMUL 21 HOH *312(H2 O) HELIX 1 AA1 SER A 6799 GLN A 6804 5 6 HELIX 2 AA2 PRO A 6810 MET A 6815 1 6 HELIX 3 AA3 MET A 6839 ASN A 6853 1 15 HELIX 4 AA4 ALA A 6877 LEU A 6887 1 11 HELIX 5 AA5 ASP A 6912 ALA A 6914 5 3 HELIX 6 AA6 ASP A 6931 LYS A 6935 5 5 HELIX 7 AA7 GLY A 6946 LYS A 6958 1 13 HELIX 8 AA8 ASN A 6975 GLY A 6983 1 9 HELIX 9 AA9 VAL A 6995 ALA A 6997 5 3 HELIX 10 AB1 ASP A 7018 ASN A 7033 1 16 HELIX 11 AB2 SER A 7039 ASP A 7044 5 6 HELIX 12 AB3 LYS A 7061 ILE A 7065 5 5 HELIX 13 AB4 ASN A 7066 LYS A 7075 1 10 HELIX 14 AB5 ALA B 4277 GLY B 4287 1 11 HELIX 15 AB6 ALA B 4324 CYS B 4326 5 3 HELIX 16 AB7 CYS B 4327 HIS B 4333 1 7 HELIX 17 AB8 THR B 4355 ALA B 4357 5 3 HELIX 18 AB9 ASP B 4359 ASN B 4367 1 9 SHEET 1 AA1 8 GLY A6806 ALA A6808 0 SHEET 2 AA1 8 PHE A6985 THR A6993 -1 O VAL A6992 N VAL A6807 SHEET 3 AA1 8 ALA A7002 TYR A7009 -1 O CYS A7007 N TRP A6987 SHEET 4 AA1 8 LEU A6959 ILE A6969 -1 N ILE A6967 O LEU A7004 SHEET 5 AA1 8 TRP A6922 SER A6927 1 N TRP A6922 O ALA A6960 SHEET 6 AA1 8 ARG A6864 PHE A6868 1 N PHE A6868 O ILE A6926 SHEET 7 AA1 8 LEU A6892 ASP A6897 1 O LEU A6892 N VAL A6865 SHEET 8 AA1 8 SER A6907 ILE A6910 1 O LEU A6909 N ASP A6895 SHEET 1 AA2 2 VAL A6916 THR A6918 0 SHEET 2 AA2 2 ILE A7088 SER A7090 -1 O SER A7089 N HIS A6917 SHEET 1 AA3 2 ALA A7056 MET A7058 0 SHEET 2 AA3 2 LEU A7078 ILE A7080 1 O ILE A7079 N ALA A7056 SHEET 1 AA4 3 ILE B4308 THR B4309 0 SHEET 2 AA4 3 TYR B4349 PRO B4353 -1 O TYR B4349 N THR B4309 SHEET 3 AA4 3 GLN B4318 GLY B4322 -1 N GLU B4319 O ILE B4352 LINK SG BCYS A6913 C4 BXE0 A7103 1555 1555 1.82 LINK SG CYS B4332 C4 XE0 B4405 1555 1555 1.83 LINK SG ACYS B4356 C4 AXE0 B4404 1555 1555 1.83 LINK O ARG A6884 NA NA A7101 1555 1555 2.43 LINK O GLN A6885 NA NA A7101 1555 1555 2.41 LINK O LEU A6887 NA NA A7101 1555 1555 2.40 LINK NA NA A7101 O HOH A7408 1555 1555 2.39 LINK NA NA A7101 O HOH B4529 1555 1555 2.41 LINK SG CYS B4327 ZN ZN B4401 1555 1555 2.28 LINK SG CYS B4330 ZN ZN B4401 1555 1555 2.33 LINK NE2 HIS B4336 ZN ZN B4401 1555 1555 2.08 LINK SG CYS B4343 ZN ZN B4401 1555 1555 2.32 LINK O THR B4364 NA NA B4403 1555 1555 2.41 LINK O LEU B4365 NA NA B4403 1555 1555 2.42 LINK O ASN B4367 NA NA B4403 1555 1555 2.41 LINK SG CYS B4370 ZN ZN B4402 1555 1555 2.34 LINK SG CYS B4373 ZN ZN B4402 1555 1555 2.36 LINK SG CYS B4381 ZN ZN B4402 1555 1555 2.34 LINK SG CYS B4383 ZN ZN B4402 1555 1555 2.35 CRYST1 171.040 171.040 52.029 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005847 0.003376 0.000000 0.00000 SCALE2 0.000000 0.006751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019220 0.00000