HEADER STRUCTURAL PROTEIN 14-NOV-22 8F5N TITLE IDENTIFICATION OF AN IMMUNODOMINANT REGION ON A GROUP A STREPTOCOCCUS TITLE 2 T-ANTIGEN REVEALS TEMPERATURE-DEPENDENT MOTION IN PILI COMPND MOL_ID: 1; COMPND 2 MOLECULE: T18.1 MAJOR PILIN BACKBONE PROTEIN T-ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MOUSE-HUMAN FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MOUSE-HUMAN FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 STRAIN: M18; SOURCE 5 ATCC: MGAS8232; SOURCE 6 GENE: TEE 18.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: TOP10F; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PCOMB3X; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PCOMB3X KEYWDS STREPTOCOCCUS T-ANTIGEN MAJOR PILIN BACKBONE PROTEIN, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RAYNES,P.G.YOUNG,N.J.MORELAND REVDAT 2 25-OCT-23 8F5N 1 REMARK REVDAT 1 08-MAR-23 8F5N 0 JRNL AUTH J.M.RAYNES,P.G.YOUNG,N.LORENZ,J.M.S.LOH,R.MCGREGOR, JRNL AUTH 2 E.N.BAKER,T.PROFT,N.J.MORELAND JRNL TITL IDENTIFICATION OF AN IMMUNODOMINANT REGION ON A GROUP A JRNL TITL 2 STREPTOCOCCUS T-ANTIGEN REVEALS TEMPERATURE-DEPENDENT MOTION JRNL TITL 3 IN PILI. JRNL REF VIRULENCE V. 14 80228 2023 JRNL REFN ISSN 2150-5608 JRNL PMID 36809931 JRNL DOI 10.1080/21505594.2023.2180228 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : 2.66000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.98000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5403 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4791 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7350 ; 1.621 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11162 ; 1.318 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 698 ; 7.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;34.338 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;13.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6082 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1070 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2807 ; 4.048 ; 5.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2806 ; 4.047 ; 5.097 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3500 ; 5.355 ; 7.617 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3501 ; 5.355 ; 7.619 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2596 ; 4.758 ; 5.341 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2597 ; 4.757 ; 5.342 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3851 ; 6.859 ; 7.890 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5532 ; 8.235 ;57.845 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5489 ; 8.206 ;57.742 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8F5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.17.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6N0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 20% (V/V) ETHYLENE REMARK 280 GLYCOL, 0.3 MDIETHYLENEGLYCOL, 0.3 MTRIETHYLENEGLYCOL, 0.3 M REMARK 280 TETRAETHYLENEGLYCOL, 0.3 MPENTAETHYLENEGLYCOL AND 0.1 M MOPS/ REMARK 280 HEPES-NA PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.24545 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.55600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.40835 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.24545 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.55600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 80.40835 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 7 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 SER H 134 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 GLY H 141 REMARK 465 SER H 195 REMARK 465 LEU H 196 REMARK 465 GLY H 197 REMARK 465 THR H 198 REMARK 465 LYS H 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG L 53 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 70 CG OD1 OD2 REMARK 470 ASN L 77 CG OD1 ND2 REMARK 470 GLU L 79 CG CD OE1 OE2 REMARK 470 GLN L 80 CG CD OE1 NE2 REMARK 470 LYS L 126 CG CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 LYS L 183 CG CD CE NZ REMARK 470 GLU L 187 CG CD OE1 OE2 REMARK 470 LYS L 188 CG CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 470 GLN H 5 CG CD OE1 NE2 REMARK 470 LYS H 23 CG CD CE NZ REMARK 470 GLU H 89 CG CD OE1 OE2 REMARK 470 LEU H 166 CG CD1 CD2 REMARK 470 THR H 200 OG1 CG2 REMARK 470 ASN H 206 CG OD1 ND2 REMARK 470 LYS H 208 CG CD CE NZ REMARK 470 ASN H 211 CG OD1 ND2 REMARK 470 LYS H 213 CG CD CE NZ REMARK 470 VAL H 214 CG1 CG2 REMARK 470 LYS H 216 CG CD CE NZ REMARK 470 LYS H 217 CG CD CE NZ REMARK 470 GLU H 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 15 OD1 ASN A 153 2.08 REMARK 500 N GLN A 226 O HOH A 401 2.13 REMARK 500 NZ LYS A 164 OD1 ASN A 279 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 135 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 CYS L 23 CB - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS L 23 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 219 -3.98 82.80 REMARK 500 LEU L 15 124.61 -38.90 REMARK 500 LEU L 47 -61.41 -109.43 REMARK 500 THR L 51 -47.36 70.47 REMARK 500 SER L 65 -171.17 -175.44 REMARK 500 ALA H 92 167.01 174.91 REMARK 500 PRO H 192 -176.46 -67.18 REMARK 500 LYS H 213 60.78 -151.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 253 OD1 REMARK 620 2 ASP A 269 OD1 100.3 REMARK 620 3 SER A 271 O 119.0 94.3 REMARK 620 4 SER A 271 OG 58.6 76.7 68.2 REMARK 620 5 ASP A 273 OD1 86.1 163.2 96.1 119.5 REMARK 620 6 HOH A 457 O 95.2 93.6 142.8 148.8 70.3 REMARK 620 7 HOH A 513 O 165.6 86.3 72.8 135.8 84.2 71.5 REMARK 620 N 1 2 3 4 5 6 DBREF1 8F5N A 1 282 UNP A0A096ZH83_STRPY DBREF2 8F5N A A0A096ZH83 1 282 DBREF 8F5N L -1 214 PDB 8F5N 8F5N -1 214 DBREF 8F5N H 1 221 PDB 8F5N 8F5N 1 221 SEQADV 8F5N THR A 272 UNP A0A096ZH8 ALA 272 VARIANT SEQRES 1 A 282 GLU THR ALA GLY VAL ILE ASP GLY SER THR LEU VAL VAL SEQRES 2 A 282 LYS LYS THR PHE PRO SER TYR THR ASP ASP LYS VAL LEU SEQRES 3 A 282 MET PRO LYS ALA ASP TYR THR PHE LYS VAL GLU ALA ASP SEQRES 4 A 282 ASP ASN ALA LYS GLY LYS THR LYS ASP GLY LEU ASP ILE SEQRES 5 A 282 LYS PRO GLY VAL ILE ASP GLY LEU GLU ASN THR LYS THR SEQRES 6 A 282 ILE HIS TYR GLY ASN SER ASP LYS THR THR ALA LYS GLU SEQRES 7 A 282 LYS SER VAL ASN PHE ASP PHE ALA ASN VAL LYS PHE PRO SEQRES 8 A 282 GLY VAL GLY VAL TYR ARG TYR THR VAL SER GLU VAL ASN SEQRES 9 A 282 GLY ASN LYS ALA GLY ILE ALA TYR ASP SER GLN GLN TRP SEQRES 10 A 282 THR VAL ASP VAL TYR VAL VAL ASN ARG GLU ASP GLY GLY SEQRES 11 A 282 PHE GLU ALA LYS TYR ILE VAL SER THR GLU GLY GLY GLN SEQRES 12 A 282 SER ASP LYS LYS PRO VAL LEU PHE LYS ASN PHE PHE ASP SEQRES 13 A 282 THR THR SER LEU LYS VAL THR LYS LYS VAL THR GLY ASN SEQRES 14 A 282 THR GLY GLU HIS GLN ARG SER PHE SER PHE THR LEU LEU SEQRES 15 A 282 LEU THR PRO ASN GLU CYS PHE GLU LYS GLY GLN VAL VAL SEQRES 16 A 282 ASN ILE LEU GLN GLY GLY GLU THR LYS LYS VAL VAL ILE SEQRES 17 A 282 GLY GLU GLU TYR SER PHE THR LEU LYS ASP LYS GLU SER SEQRES 18 A 282 VAL THR LEU SER GLN LEU PRO VAL GLY ILE GLU TYR LYS SEQRES 19 A 282 VAL THR GLU GLU ASP VAL THR LYS ASP GLY TYR LYS THR SEQRES 20 A 282 SER ALA THR LEU LYS ASP GLY ASP VAL THR ASP GLY TYR SEQRES 21 A 282 ASN LEU GLY ASP SER LYS THR THR ASP LYS SER THR ASP SEQRES 22 A 282 GLU ILE VAL VAL THR ASN LYS ARG ASP SEQRES 1 L 216 GLY ALA ASP ILE VAL MET THR GLN SER THR SER SER LEU SEQRES 2 L 216 SER ALA SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG SEQRES 3 L 216 ALA SER GLN ASP ILE SER ASN SER LEU ASN TRP TYR GLN SEQRES 4 L 216 GLN LYS PRO ASP GLY THR VAL LYS LEU LEU ILE HIS TYR SEQRES 5 L 216 THR SER ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER SEQRES 6 L 216 GLY SER GLY SER GLY THR ASP TYR SER LEU THR ILE SER SEQRES 7 L 216 ASN LEU GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN SEQRES 8 L 216 GLN VAL ASN THR LEU PRO LEU THR PHE GLY ALA GLY THR SEQRES 9 L 216 LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER LEU PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 221 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR SER PHE TYR MET TYR TRP VAL LYS GLN SEQRES 4 H 221 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY GLY ILE ASN SEQRES 5 H 221 PRO SER ASN GLY GLY ALA ASN PHE ASN GLU LYS PHE LYS SEQRES 6 H 221 ASN LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 221 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 221 ALA VAL TYR TYR CYS THR ARG GLY PHE TYR TYR GLY HIS SEQRES 9 H 221 TRP TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR SEQRES 10 H 221 VAL SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 221 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 221 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 221 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 221 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 221 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 221 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 221 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ FORMUL 5 HOH *302(H2 O) HELIX 1 AA1 LYS A 73 LYS A 77 5 5 HELIX 2 AA2 VAL A 240 GLY A 244 5 5 HELIX 3 AA3 GLU L 79 ILE L 83 5 5 HELIX 4 AA4 SER L 121 SER L 127 1 7 HELIX 5 AA5 LYS L 183 LYS L 188 1 6 HELIX 6 AA6 THR H 28 PHE H 32 5 5 HELIX 7 AA7 GLU H 62 LYS H 65 5 4 HELIX 8 AA8 LYS H 74 SER H 76 5 3 HELIX 9 AA9 THR H 87 SER H 91 5 5 HELIX 10 AB1 SER H 163 ALA H 165 5 3 HELIX 11 AB2 HIS H 207 ASN H 211 5 5 SHEET 1 AA1 5 VAL A 5 ASP A 7 0 SHEET 2 AA1 5 PHE A 131 GLU A 140 -1 O ILE A 136 N ILE A 6 SHEET 3 AA1 5 TRP A 117 ASN A 125 -1 N TYR A 122 O LYS A 134 SHEET 4 AA1 5 GLY A 94 GLU A 102 -1 N TYR A 96 O VAL A 121 SHEET 5 AA1 5 ILE A 52 PRO A 54 1 N LYS A 53 O VAL A 95 SHEET 1 AA2 6 VAL A 5 ASP A 7 0 SHEET 2 AA2 6 PHE A 131 GLU A 140 -1 O ILE A 136 N ILE A 6 SHEET 3 AA2 6 TRP A 117 ASN A 125 -1 N TYR A 122 O LYS A 134 SHEET 4 AA2 6 GLY A 94 GLU A 102 -1 N TYR A 96 O VAL A 121 SHEET 5 AA2 6 ALA A 30 ALA A 38 -1 N GLU A 37 O THR A 99 SHEET 6 AA2 6 THR A 63 TYR A 68 -1 O LYS A 64 N PHE A 34 SHEET 1 AA3 3 LYS A 79 ASP A 84 0 SHEET 2 AA3 3 THR A 10 THR A 16 -1 N VAL A 13 O VAL A 81 SHEET 3 AA3 3 LEU A 150 LYS A 152 1 O PHE A 151 N LYS A 14 SHEET 1 AA4 2 ILE A 110 ALA A 111 0 SHEET 2 AA4 2 PHE A 154 PHE A 155 -1 O PHE A 154 N ALA A 111 SHEET 1 AA5 5 SER A 221 PRO A 228 0 SHEET 2 AA5 5 THR A 157 THR A 167 -1 N LEU A 160 O LEU A 224 SHEET 3 AA5 5 ASP A 273 LYS A 280 1 O VAL A 277 N LYS A 165 SHEET 4 AA5 5 LYS A 246 ASP A 253 -1 N LYS A 252 O GLU A 274 SHEET 5 AA5 5 VAL A 256 GLY A 259 -1 O VAL A 256 N ASP A 253 SHEET 1 AA6 4 TYR A 212 LEU A 216 0 SHEET 2 AA6 4 PHE A 177 THR A 184 -1 N LEU A 181 O TYR A 212 SHEET 3 AA6 4 GLU A 232 GLU A 237 -1 O GLU A 232 N THR A 184 SHEET 4 AA6 4 LYS A 266 THR A 267 -1 O LYS A 266 N TYR A 233 SHEET 1 AA7 2 VAL A 194 GLN A 199 0 SHEET 2 AA7 2 GLU A 202 VAL A 207 -1 O VAL A 206 N VAL A 195 SHEET 1 AA8 4 MET L 4 THR L 5 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA8 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA9 6 SER L 10 ALA L 13 0 SHEET 2 AA9 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA9 6 VAL L 44 HIS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA9 6 ARG L 53 LEU L 54 -1 O ARG L 53 N HIS L 49 SHEET 1 AB1 4 SER L 10 ALA L 13 0 SHEET 2 AB1 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB4 4 GLN H 3 GLN H 6 0 SHEET 2 AB4 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AB4 4 THR H 78 LEU H 83 -1 O MET H 81 N LEU H 20 SHEET 4 AB4 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AB5 6 GLU H 10 VAL H 12 0 SHEET 2 AB5 6 THR H 114 VAL H 118 1 O THR H 115 N GLU H 10 SHEET 3 AB5 6 ALA H 92 TYR H 101 -1 N ALA H 92 O VAL H 116 SHEET 4 AB5 6 MET H 34 GLN H 39 -1 N TYR H 35 O THR H 97 SHEET 5 AB5 6 GLU H 46 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AB5 6 ALA H 58 PHE H 60 -1 O ASN H 59 N GLY H 50 SHEET 1 AB6 4 GLU H 10 VAL H 12 0 SHEET 2 AB6 4 THR H 114 VAL H 118 1 O THR H 115 N GLU H 10 SHEET 3 AB6 4 ALA H 92 TYR H 101 -1 N ALA H 92 O VAL H 116 SHEET 4 AB6 4 TRP H 105 TRP H 110 -1 O TYR H 106 N PHE H 100 SHEET 1 AB7 4 SER H 127 LEU H 131 0 SHEET 2 AB7 4 ALA H 143 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB7 4 TYR H 183 VAL H 191 -1 O TYR H 183 N TYR H 152 SHEET 4 AB7 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB8 4 SER H 127 LEU H 131 0 SHEET 2 AB8 4 ALA H 143 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB8 4 TYR H 183 VAL H 191 -1 O TYR H 183 N TYR H 152 SHEET 4 AB8 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB9 3 THR H 158 TRP H 161 0 SHEET 2 AB9 3 ILE H 202 ASN H 206 -1 O ASN H 204 N SER H 160 SHEET 3 AB9 3 ASP H 215 LYS H 217 -1 O LYS H 216 N CYS H 203 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.15 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.08 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.09 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.05 LINK NZ LYS A 15 CG ASN A 153 1555 1555 1.25 LINK NZ LYS A 164 CG ASN A 279 1555 1555 1.30 LINK OD1 ASP A 253 CA CA A 301 1555 1555 2.39 LINK OD1 ASP A 269 CA CA A 301 1555 1555 2.30 LINK O SER A 271 CA CA A 301 1555 1555 2.34 LINK OG SER A 271 CA CA A 301 1555 1555 2.65 LINK OD1 ASP A 273 CA CA A 301 1555 1555 2.38 LINK CA CA A 301 O HOH A 457 1555 1555 2.68 LINK CA CA A 301 O HOH A 513 1555 1555 2.47 CISPEP 1 LEU L 94 PRO L 95 0 -6.07 CISPEP 2 TYR L 140 PRO L 141 0 3.71 CISPEP 3 PHE H 153 PRO H 154 0 -9.45 CISPEP 4 GLU H 155 PRO H 156 0 -1.32 CRYST1 126.362 41.112 171.600 90.00 110.42 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007914 0.000000 0.002946 0.00000 SCALE2 0.000000 0.024324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006218 0.00000