HEADER IMMUNE SYSTEM 17-NOV-22 8F6U TITLE CRYSTAL STRUCTURE OF NANOBODY VHH113 BOUND TO ITS ANTIGEN PA14 CIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CFTR INHIBITORY FACTOR; COMPND 3 CHAIN: D, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY VHH113; COMPND 7 CHAIN: B, A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PA14; SOURCE 3 ORGANISM_TAXID: 652611; SOURCE 4 GENE: PA2394; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDPM73; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 12 ORGANISM_TAXID: 30538; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: DE3 RIL; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PCOMB3X KEYWDS PSEUDOMONAS AERUGINOSA, NANOBODY VHH, IMMUNOGLOBULIN DOMAIN, CFTR KEYWDS 2 INHIBITORY FACTOR (CIF), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.R.SIMARD,N.M.TAHER,A.K.MISHRA,D.R.MADDEN REVDAT 1 13-MAR-24 8F6U 0 JRNL AUTH A.R.SIMARD,D.R.MADDEN JRNL TITL CRYSTAL STRUCTURE OF NANOBODY VHH113 BOUND TO ITS ANTIGEN JRNL TITL 2 PA14 CIF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.VASYLIEVA,S.KITAMURA,J.DONG,B.BARNYCH,K.L.HVORECNY, REMARK 1 AUTH 2 D.R.MADDEN,S.J.GEE,D.W.WOLAN,C.MORISSEAU,B.D.HAMMOCK REMARK 1 TITL NANOBODY-BASED BINDING ASSAY FOR THE DISCOVERY OF POTENT REMARK 1 TITL 2 INHIBITORS OF CFTR INHIBITORY FACTOR (CIF). REMARK 1 REF ANAL CHIM ACTA V.1057 106 2019 REMARK 1 REFN ISSN 1873-4324 REMARK 1 PMID 30832908 REMARK 1 DOI 10.1016/J.ACA.2018.12.060 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 124297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4900 - 5.2800 0.99 4088 317 0.1774 0.1811 REMARK 3 2 5.2800 - 4.1900 0.99 4228 25 0.1344 0.1852 REMARK 3 3 4.1900 - 3.6600 0.99 3927 296 0.1471 0.1612 REMARK 3 4 3.6600 - 3.3300 1.00 3920 288 0.1560 0.1683 REMARK 3 5 3.3300 - 3.0900 0.99 4117 97 0.1666 0.1689 REMARK 3 6 3.0900 - 2.9100 0.99 3912 261 0.1836 0.1996 REMARK 3 7 2.9100 - 2.7600 0.99 3921 217 0.1818 0.2122 REMARK 3 8 2.7600 - 2.6400 0.99 3986 180 0.1774 0.2014 REMARK 3 9 2.6400 - 2.5400 0.99 3935 209 0.1771 0.1961 REMARK 3 10 2.5400 - 2.4500 0.99 3929 219 0.1812 0.2333 REMARK 3 11 2.4500 - 2.3800 0.99 3929 208 0.1787 0.1885 REMARK 3 12 2.3800 - 2.3100 0.99 3948 205 0.1708 0.2094 REMARK 3 13 2.3100 - 2.2500 0.99 3917 204 0.1712 0.1935 REMARK 3 14 2.2500 - 2.1900 0.99 3932 211 0.1722 0.1799 REMARK 3 15 2.1900 - 2.1400 0.99 3884 224 0.1760 0.1934 REMARK 3 16 2.1400 - 2.1000 0.99 3944 180 0.1810 0.2356 REMARK 3 17 2.1000 - 2.0500 0.99 3915 222 0.1864 0.2098 REMARK 3 18 2.0500 - 2.0200 0.99 3901 210 0.1919 0.2104 REMARK 3 19 2.0200 - 1.9800 0.99 3930 189 0.1945 0.2051 REMARK 3 20 1.9800 - 1.9500 0.99 3871 238 0.1952 0.2359 REMARK 3 21 1.9500 - 1.9100 0.99 3919 166 0.2124 0.2313 REMARK 3 22 1.9100 - 1.8900 0.99 3911 209 0.2269 0.2641 REMARK 3 23 1.8900 - 1.8600 0.99 3891 220 0.2460 0.2971 REMARK 3 24 1.8600 - 1.8300 0.99 3895 203 0.2573 0.2710 REMARK 3 25 1.8300 - 1.8100 0.99 3894 210 0.2580 0.2985 REMARK 3 26 1.8100 - 1.7800 0.99 3912 209 0.2548 0.2871 REMARK 3 27 1.7800 - 1.7600 0.98 3845 218 0.2648 0.3057 REMARK 3 28 1.7600 - 1.7400 0.99 3891 192 0.2844 0.2712 REMARK 3 29 1.7400 - 1.7200 0.99 3897 220 0.3018 0.3763 REMARK 3 30 1.7200 - 1.7000 0.98 3880 181 0.3142 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6812 REMARK 3 ANGLE : 0.839 9259 REMARK 3 CHIRALITY : 0.055 965 REMARK 3 PLANARITY : 0.008 1221 REMARK 3 DIHEDRAL : 12.868 2439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOMS MODELED WITH ZERO OCCUPANCY COULD REMARK 3 NOT BE PLACED WITH CONFIDENCE AND WERE SELECTED FOR ZERO- REMARK 3 OCCUPANCY FLAGGING AFTER MANUAL INSPECTION OF THE 2FO-FC MAP AT REMARK 3 A 0.5-SIGMA CUTOFF. REMARK 4 REMARK 4 8F6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979339 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10670 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KD2, 8E1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM BROMIDE, 200 MM REMARK 280 POTASSIUM THIOCYANATE, 100 MM SODIUM ACETATE PH 5, 3% (W/V) REMARK 280 GAMMA-PGA (NA+ FORM, LM), 10% (W/V) PEG 2000 MME, PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292.8K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.37650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.37650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.59250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.97050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.59250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.97050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.37650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.59250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.97050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.37650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.59250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.97050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 271 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 318 REMARK 465 ARG D 319 REMARK 465 HIS D 320 REMARK 465 HIS D 321 REMARK 465 HIS D 322 REMARK 465 HIS D 323 REMARK 465 HIS D 324 REMARK 465 HIS D 325 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 130 REMARK 465 GLN B 131 REMARK 465 ALA B 132 REMARK 465 GLY B 133 REMARK 465 GLN B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 GLY B 141 REMARK 465 ALA B 142 REMARK 465 TYR B 143 REMARK 465 PRO B 144 REMARK 465 TYR B 145 REMARK 465 ASP B 146 REMARK 465 VAL B 147 REMARK 465 PRO B 148 REMARK 465 ASP B 149 REMARK 465 TYR B 150 REMARK 465 ALA B 151 REMARK 465 SER B 152 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 ALA C 25 REMARK 465 ARG C 319 REMARK 465 HIS C 320 REMARK 465 HIS C 321 REMARK 465 HIS C 322 REMARK 465 HIS C 323 REMARK 465 HIS C 324 REMARK 465 HIS C 325 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 130 REMARK 465 GLN A 131 REMARK 465 ALA A 132 REMARK 465 GLY A 133 REMARK 465 GLN A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 GLY A 141 REMARK 465 ALA A 142 REMARK 465 TYR A 143 REMARK 465 PRO A 144 REMARK 465 TYR A 145 REMARK 465 ASP A 146 REMARK 465 VAL A 147 REMARK 465 PRO A 148 REMARK 465 ASP A 149 REMARK 465 TYR A 150 REMARK 465 ALA A 151 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN D 53 CD OE1 NE2 REMARK 480 GLU D 212 CG CD OE1 OE2 REMARK 480 LYS C 45 CE NZ REMARK 480 ARG C 121 NE CZ NH1 NH2 REMARK 480 GLU C 212 CG CD OE1 OE2 REMARK 480 GLU C 285 CD OE1 OE2 REMARK 480 ARG C 309 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 129 -131.82 57.07 REMARK 500 TRP D 298 68.73 -100.69 REMARK 500 ASP C 129 -131.86 58.00 REMARK 500 ALA C 154 147.97 -176.91 REMARK 500 ALA A 97 165.80 175.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 338 DISTANCE = 5.86 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KD2 RELATED DB: PDB REMARK 900 3KD2 CONTAINS CIF REMARK 900 RELATED ID: 8E2N RELATED DB: PDB REMARK 900 8E2N CONTAINS NANOBODY VHH113 REMARK 900 RELATED ID: 8ELN RELATED DB: PDB REMARK 900 8ELN CONTAINS CIF CO-CRYSTALIZED WITH RELATED NANOBODY VHH222 REMARK 900 RELATED ID: 8EVD RELATED DB: PDB REMARK 900 8EVD CONTAINS CIF CO-CRYSTALIZED WITH RELATED NANOBODY VHH101 REMARK 900 RELATED ID: 8EE2 RELATED DB: PDB REMARK 900 8EE2 ONTAINS CIF CO-CRYSTALIZED WITH RELATED NANOBODY VHH219 DBREF1 8F6U D 25 325 UNP A0A0M3KL26_PSEAB DBREF2 8F6U D A0A0M3KL26 1 301 DBREF 8F6U B 1 154 PDB 8F6U 8F6U 1 154 DBREF1 8F6U C 25 325 UNP A0A0M3KL26_PSEAB DBREF2 8F6U C A0A0M3KL26 1 301 DBREF 8F6U A 1 154 PDB 8F6U 8F6U 1 154 SEQRES 1 D 301 ALA GLU GLU PHE PRO VAL PRO ASN GLY PHE GLU SER ALA SEQRES 2 D 301 TYR ARG GLU VAL ASP GLY VAL LYS LEU HIS TYR VAL LYS SEQRES 3 D 301 GLY GLY GLN GLY PRO LEU VAL MET LEU VAL HIS GLY PHE SEQRES 4 D 301 GLY GLN THR TRP TYR GLU TRP HIS GLN LEU MET PRO GLU SEQRES 5 D 301 LEU ALA LYS ARG PHE THR VAL ILE ALA PRO ASP LEU PRO SEQRES 6 D 301 GLY LEU GLY GLN SER GLU PRO PRO LYS THR GLY TYR SER SEQRES 7 D 301 GLY GLU GLN VAL ALA VAL TYR LEU HIS LYS LEU ALA ARG SEQRES 8 D 301 GLN PHE SER PRO ASP ARG PRO PHE ASP LEU VAL ALA HIS SEQRES 9 D 301 ASP ILE GLY ILE TRP ASN THR TYR PRO MET VAL VAL LYS SEQRES 10 D 301 ASN GLN ALA ASP ILE ALA ARG LEU VAL TYR MET GLU ALA SEQRES 11 D 301 PRO ILE PRO ASP ALA ARG ILE TYR ARG PHE PRO ALA PHE SEQRES 12 D 301 THR ALA GLN GLY GLU SER LEU VAL TRP HIS PHE SER PHE SEQRES 13 D 301 PHE ALA ALA ASP ASP ARG LEU ALA GLU THR LEU ILE ALA SEQRES 14 D 301 GLY LYS GLU ARG PHE PHE LEU GLU HIS PHE ILE LYS SER SEQRES 15 D 301 HIS ALA SER ASN THR GLU VAL PHE SER GLU ARG LEU LEU SEQRES 16 D 301 ASP LEU TYR ALA ARG SER TYR ALA LYS PRO HIS SER LEU SEQRES 17 D 301 ASN ALA SER PHE GLU TYR TYR ARG ALA LEU ASN GLU SER SEQRES 18 D 301 VAL ARG GLN ASN ALA GLU LEU ALA LYS THR ARG LEU GLN SEQRES 19 D 301 MET PRO THR MET THR LEU ALA GLY GLY GLY HIS GLY GLY SEQRES 20 D 301 MET GLY THR PHE GLN LEU GLU GLN MET LYS ALA TYR ALA SEQRES 21 D 301 GLU ASP VAL GLU GLY HIS VAL LEU PRO GLY CYS GLY HIS SEQRES 22 D 301 TRP LEU PRO GLU GLU CYS ALA ALA PRO MET ASN ARG LEU SEQRES 23 D 301 VAL ILE ASP PHE LEU SER ARG GLY ARG HIS HIS HIS HIS SEQRES 24 D 301 HIS HIS SEQRES 1 B 154 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 B 154 VAL PRO ALA GLY GLY SER LEU ARG LEU SER CYS THR THR SEQRES 3 B 154 SER GLU ARG ALA PHE ARG SER ASN ALA MET GLY TRP PHE SEQRES 4 B 154 ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA SEQRES 5 B 154 VAL SER VAL LEU SER TRP SER GLY ASP SER ALA VAL VAL SEQRES 6 B 154 ALA ASP SER VAL ALA GLY ARG PHE THR ILE PHE ARG ASP SEQRES 7 B 154 ASN ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU SEQRES 8 B 154 LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ASN GLY ALA SEQRES 9 B 154 SER ASP ILE GLY ALA LEU GLN SER GLY ALA SER SER TRP SEQRES 10 B 154 SER TRP GLY HIS GLY THR GLN VAL THR VAL SER SER GLY SEQRES 11 B 154 GLN ALA GLY GLN HIS HIS HIS HIS HIS HIS GLY ALA TYR SEQRES 12 B 154 PRO TYR ASP VAL PRO ASP TYR ALA SER GLY SER SEQRES 1 C 301 ALA GLU GLU PHE PRO VAL PRO ASN GLY PHE GLU SER ALA SEQRES 2 C 301 TYR ARG GLU VAL ASP GLY VAL LYS LEU HIS TYR VAL LYS SEQRES 3 C 301 GLY GLY GLN GLY PRO LEU VAL MET LEU VAL HIS GLY PHE SEQRES 4 C 301 GLY GLN THR TRP TYR GLU TRP HIS GLN LEU MET PRO GLU SEQRES 5 C 301 LEU ALA LYS ARG PHE THR VAL ILE ALA PRO ASP LEU PRO SEQRES 6 C 301 GLY LEU GLY GLN SER GLU PRO PRO LYS THR GLY TYR SER SEQRES 7 C 301 GLY GLU GLN VAL ALA VAL TYR LEU HIS LYS LEU ALA ARG SEQRES 8 C 301 GLN PHE SER PRO ASP ARG PRO PHE ASP LEU VAL ALA HIS SEQRES 9 C 301 ASP ILE GLY ILE TRP ASN THR TYR PRO MET VAL VAL LYS SEQRES 10 C 301 ASN GLN ALA ASP ILE ALA ARG LEU VAL TYR MET GLU ALA SEQRES 11 C 301 PRO ILE PRO ASP ALA ARG ILE TYR ARG PHE PRO ALA PHE SEQRES 12 C 301 THR ALA GLN GLY GLU SER LEU VAL TRP HIS PHE SER PHE SEQRES 13 C 301 PHE ALA ALA ASP ASP ARG LEU ALA GLU THR LEU ILE ALA SEQRES 14 C 301 GLY LYS GLU ARG PHE PHE LEU GLU HIS PHE ILE LYS SER SEQRES 15 C 301 HIS ALA SER ASN THR GLU VAL PHE SER GLU ARG LEU LEU SEQRES 16 C 301 ASP LEU TYR ALA ARG SER TYR ALA LYS PRO HIS SER LEU SEQRES 17 C 301 ASN ALA SER PHE GLU TYR TYR ARG ALA LEU ASN GLU SER SEQRES 18 C 301 VAL ARG GLN ASN ALA GLU LEU ALA LYS THR ARG LEU GLN SEQRES 19 C 301 MET PRO THR MET THR LEU ALA GLY GLY GLY HIS GLY GLY SEQRES 20 C 301 MET GLY THR PHE GLN LEU GLU GLN MET LYS ALA TYR ALA SEQRES 21 C 301 GLU ASP VAL GLU GLY HIS VAL LEU PRO GLY CYS GLY HIS SEQRES 22 C 301 TRP LEU PRO GLU GLU CYS ALA ALA PRO MET ASN ARG LEU SEQRES 23 C 301 VAL ILE ASP PHE LEU SER ARG GLY ARG HIS HIS HIS HIS SEQRES 24 C 301 HIS HIS SEQRES 1 A 154 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 A 154 VAL PRO ALA GLY GLY SER LEU ARG LEU SER CYS THR THR SEQRES 3 A 154 SER GLU ARG ALA PHE ARG SER ASN ALA MET GLY TRP PHE SEQRES 4 A 154 ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA SEQRES 5 A 154 VAL SER VAL LEU SER TRP SER GLY ASP SER ALA VAL VAL SEQRES 6 A 154 ALA ASP SER VAL ALA GLY ARG PHE THR ILE PHE ARG ASP SEQRES 7 A 154 ASN ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU SEQRES 8 A 154 LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ASN GLY ALA SEQRES 9 A 154 SER ASP ILE GLY ALA LEU GLN SER GLY ALA SER SER TRP SEQRES 10 A 154 SER TRP GLY HIS GLY THR GLN VAL THR VAL SER SER GLY SEQRES 11 A 154 GLN ALA GLY GLN HIS HIS HIS HIS HIS HIS GLY ALA TYR SEQRES 12 A 154 PRO TYR ASP VAL PRO ASP TYR ALA SER GLY SER FORMUL 5 HOH *784(H2 O) HELIX 1 AA1 THR D 66 HIS D 71 5 6 HELIX 2 AA2 LEU D 73 ALA D 78 1 6 HELIX 3 AA3 SER D 102 SER D 118 1 17 HELIX 4 AA4 ASP D 129 ASN D 134 1 6 HELIX 5 AA5 THR D 135 ASN D 142 1 8 HELIX 6 AA6 ASP D 158 PHE D 164 5 7 HELIX 7 AA7 TRP D 176 ALA D 183 1 8 HELIX 8 AA8 ARG D 186 ALA D 193 1 8 HELIX 9 AA9 LYS D 195 HIS D 207 1 13 HELIX 10 AB1 ASN D 210 PHE D 214 5 5 HELIX 11 AB2 SER D 215 ALA D 227 1 13 HELIX 12 AB3 LYS D 228 ALA D 241 1 14 HELIX 13 AB4 ALA D 241 ALA D 253 1 13 HELIX 14 AB5 THR D 274 ALA D 282 1 9 HELIX 15 AB6 TRP D 298 CYS D 303 1 6 HELIX 16 AB7 CYS D 303 ARG D 317 1 15 HELIX 17 AB8 SER B 27 SER B 33 1 7 HELIX 18 AB9 LYS B 92 THR B 96 5 5 HELIX 19 AC1 ASP B 106 GLY B 113 1 8 HELIX 20 AC2 THR C 66 HIS C 71 5 6 HELIX 21 AC3 LEU C 73 ALA C 78 1 6 HELIX 22 AC4 SER C 102 SER C 118 1 17 HELIX 23 AC5 ASP C 129 ASN C 134 1 6 HELIX 24 AC6 THR C 135 ASN C 142 1 8 HELIX 25 AC7 ASP C 158 PHE C 164 5 7 HELIX 26 AC8 TRP C 176 ALA C 183 1 8 HELIX 27 AC9 ARG C 186 ALA C 193 1 8 HELIX 28 AD1 LYS C 195 HIS C 207 1 13 HELIX 29 AD2 ASN C 210 PHE C 214 5 5 HELIX 30 AD3 SER C 215 ALA C 227 1 13 HELIX 31 AD4 LYS C 228 ALA C 241 1 14 HELIX 32 AD5 ALA C 241 ALA C 253 1 13 HELIX 33 AD6 THR C 274 LYS C 281 1 8 HELIX 34 AD7 TRP C 298 CYS C 303 1 6 HELIX 35 AD8 CYS C 303 SER C 316 1 14 HELIX 36 AD9 SER A 27 SER A 33 1 7 HELIX 37 AE1 ASN A 79 LYS A 81 5 3 HELIX 38 AE2 LYS A 92 THR A 96 5 5 HELIX 39 AE3 ASP A 106 GLY A 113 1 8 SHEET 1 AA1 8 GLU D 35 VAL D 41 0 SHEET 2 AA1 8 VAL D 44 GLY D 52 -1 O LYS D 50 N GLU D 35 SHEET 3 AA1 8 THR D 82 PRO D 86 -1 O VAL D 83 N GLY D 51 SHEET 4 AA1 8 LEU D 56 VAL D 60 1 N VAL D 57 O THR D 82 SHEET 5 AA1 8 PHE D 123 HIS D 128 1 O ASP D 124 N LEU D 56 SHEET 6 AA1 8 ILE D 146 MET D 152 1 O VAL D 150 N LEU D 125 SHEET 7 AA1 8 THR D 261 GLY D 266 1 O MET D 262 N LEU D 149 SHEET 8 AA1 8 VAL D 287 LEU D 292 1 O LEU D 292 N ALA D 265 SHEET 1 AA2 2 PHE D 167 THR D 168 0 SHEET 2 AA2 2 GLY D 171 GLU D 172 -1 O GLY D 171 N THR D 168 SHEET 1 AA3 4 VAL B 7 SER B 9 0 SHEET 2 AA3 4 LEU B 20 THR B 25 -1 O THR B 25 N VAL B 7 SHEET 3 AA3 4 THR B 83 MET B 88 -1 O MET B 88 N LEU B 20 SHEET 4 AA3 4 PHE B 73 ASP B 78 -1 N PHE B 76 O TYR B 85 SHEET 1 AA4 6 GLY B 12 PRO B 15 0 SHEET 2 AA4 6 THR B 123 SER B 128 1 O THR B 126 N VAL B 14 SHEET 3 AA4 6 ALA B 97 ALA B 104 -1 N TYR B 99 O THR B 123 SHEET 4 AA4 6 ALA B 35 GLN B 41 -1 N PHE B 39 O TYR B 100 SHEET 5 AA4 6 GLU B 48 VAL B 53 -1 O GLU B 48 N ARG B 40 SHEET 6 AA4 6 ALA B 63 VAL B 65 -1 O VAL B 64 N ALA B 52 SHEET 1 AA5 8 PHE C 34 VAL C 41 0 SHEET 2 AA5 8 VAL C 44 GLY C 52 -1 O LEU C 46 N ARG C 39 SHEET 3 AA5 8 THR C 82 PRO C 86 -1 O VAL C 83 N GLY C 51 SHEET 4 AA5 8 LEU C 56 VAL C 60 1 N VAL C 57 O THR C 82 SHEET 5 AA5 8 PHE C 123 HIS C 128 1 O ASP C 124 N LEU C 56 SHEET 6 AA5 8 ILE C 146 MET C 152 1 O VAL C 150 N LEU C 125 SHEET 7 AA5 8 THR C 261 GLY C 266 1 O MET C 262 N TYR C 151 SHEET 8 AA5 8 VAL C 287 LEU C 292 1 O LEU C 292 N ALA C 265 SHEET 1 AA6 2 PHE C 167 THR C 168 0 SHEET 2 AA6 2 GLY C 171 GLU C 172 -1 O GLY C 171 N THR C 168 SHEET 1 AA7 4 VAL A 7 SER A 9 0 SHEET 2 AA7 4 LEU A 20 THR A 25 -1 O SER A 23 N SER A 9 SHEET 3 AA7 4 THR A 83 MET A 88 -1 O MET A 88 N LEU A 20 SHEET 4 AA7 4 PHE A 73 ASP A 78 -1 N ASP A 78 O THR A 83 SHEET 1 AA8 6 LEU A 13 PRO A 15 0 SHEET 2 AA8 6 THR A 123 SER A 128 1 O THR A 126 N VAL A 14 SHEET 3 AA8 6 ALA A 97 ALA A 104 -1 N TYR A 99 O THR A 123 SHEET 4 AA8 6 ALA A 35 GLN A 41 -1 N ALA A 35 O ALA A 104 SHEET 5 AA8 6 GLU A 48 VAL A 53 -1 O ALA A 51 N TRP A 38 SHEET 6 AA8 6 ALA A 63 VAL A 65 -1 O VAL A 64 N ALA A 52 SSBOND 1 CYS D 295 CYS D 303 1555 1555 2.02 SSBOND 2 CYS B 24 CYS B 101 1555 1555 2.04 SSBOND 3 CYS C 295 CYS C 303 1555 1555 2.21 SSBOND 4 CYS A 24 CYS A 101 1555 1555 2.02 CRYST1 115.185 185.941 106.753 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009367 0.00000