data_8F94 # _entry.id 8F94 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8F94 pdb_00008f94 10.2210/pdb8f94/pdb WWPDB D_1000270199 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8F94 _pdbx_database_status.recvd_initial_deposition_date 2022-11-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Terrell, J.R.' 1 0000-0001-5394-5663 'Ogbonna, E.N.' 2 0000-0002-0762-0603 'Wilson, W.D.' 3 0000-0001-5225-5089 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Bio Med Chem Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2694-2437 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 335 _citation.page_last 348 _citation.title 'X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.3c00002 _citation.pdbx_database_id_PubMed 37599788 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ogbonna, E.N.' 1 ? primary 'Paul, A.' 2 0000-0003-4592-3442 primary 'Farahat, A.A.' 3 ? primary 'Terrell, J.R.' 4 ? primary 'Mineva, E.' 5 ? primary 'Ogbonna, V.' 6 ? primary 'Boykin, D.W.' 7 ? primary 'Wilson, W.D.' 8 0000-0001-5225-5089 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8F94 _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.769 _cell.length_a_esd ? _cell.length_b 38.769 _cell.length_b_esd ? _cell.length_c 159.771 _cell.length_c_esd ? _cell.volume 207968.607 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8F94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA 16-mer' 4898.191 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 9 ? ? ? ? 3 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGGATATATCCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DA n 1 9 DT n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'DNA molecule' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2853804 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8F94 _struct_ref.pdbx_db_accession 8F94 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8F94 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8F94 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8F94 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1 mM DNA duplex annealed in 7.5 mM HEPES, pH=6.6 mixed at a 1:1 ratio with well solution containing 10 mM HEPES, pH=8.6, 600 mM CaCl2, 38% PEG200 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 288 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-28 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Horizontal double crystal monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92010 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92010 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 15.50 _reflns.entry_id 8F94 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.08 _reflns.d_resolution_low 26.63 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20060 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.55 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.02436 _reflns.pdbx_Rpim_I_all 0.01722 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.01722 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.08 _reflns_shell.d_res_low 1.119 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.48 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1882 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.2092 _reflns_shell.pdbx_Rpim_I_all 0.1479 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.939 _reflns_shell.pdbx_CC_star 0.984 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 92.88 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1479 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 21.64 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8F94 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.08 _refine.ls_d_res_low 26.63 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20000 _refine.ls_number_reflns_R_free 1996 _refine.ls_number_reflns_R_work 18004 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.87 _refine.ls_percent_reflns_R_free 9.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2035 _refine.ls_R_factor_R_free 0.2247 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2012 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.7555 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1107 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.08 _refine_hist.d_res_low 26.63 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 428 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0204 ? 364 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.0651 ? 560 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1188 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0342 ? 16 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 33.2802 ? 156 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.08 1.11 . . 134 1204 92.92 . . . . 0.2522 . . . . . . . . . . . 0.2855 'X-RAY DIFFRACTION' 1.11 1.14 . . 135 1209 93.59 . . . . 0.2177 . . . . . . . . . . . 0.2329 'X-RAY DIFFRACTION' 1.14 1.17 . . 137 1245 95.97 . . . . 0.1892 . . . . . . . . . . . 0.2239 'X-RAY DIFFRACTION' 1.17 1.21 . . 138 1245 96.85 . . . . 0.1919 . . . . . . . . . . . 0.2124 'X-RAY DIFFRACTION' 1.21 1.25 . . 140 1264 97.98 . . . . 0.1915 . . . . . . . . . . . 0.2275 'X-RAY DIFFRACTION' 1.25 1.30 . . 141 1265 98.67 . . . . 0.1684 . . . . . . . . . . . 0.1850 'X-RAY DIFFRACTION' 1.30 1.36 . . 139 1275 98.61 . . . . 0.1610 . . . . . . . . . . . 0.2076 'X-RAY DIFFRACTION' 1.36 1.43 . . 145 1306 99.04 . . . . 0.1612 . . . . . . . . . . . 0.1896 'X-RAY DIFFRACTION' 1.43 1.52 . . 144 1298 99.24 . . . . 0.1616 . . . . . . . . . . . 0.2196 'X-RAY DIFFRACTION' 1.52 1.64 . . 143 1290 99.17 . . . . 0.1619 . . . . . . . . . . . 0.1901 'X-RAY DIFFRACTION' 1.64 1.80 . . 146 1311 98.85 . . . . 0.1469 . . . . . . . . . . . 0.1872 'X-RAY DIFFRACTION' 1.80 2.07 . . 147 1328 99.86 . . . . 0.1724 . . . . . . . . . . . 0.2077 'X-RAY DIFFRACTION' 2.07 2.60 . . 150 1349 100.00 . . . . 0.2154 . . . . . . . . . . . 0.2113 'X-RAY DIFFRACTION' 2.60 26.63 . . 157 1415 99.31 . . . . 0.2322 . . . . . . . . . . . 0.2532 # _struct.entry_id 8F94 _struct.title ;Structure of an alternating AT 16-mer: 5'-GCTGGATATATCCAGC-3 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8F94 _struct_keywords.text 'DNA, AT sequence, Minor groove' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 3 A CA 101 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc2 metalc ? ? A DC 2 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 3 A CA 101 2_455 ? ? ? ? ? ? ? 2.360 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 J CA . CA ? ? A DG 6 A CA 109 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc4 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 7 A CA 102 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc5 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 7 A CA 102 2_445 ? ? ? ? ? ? ? 2.296 ? ? metalc6 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 7 A CA 103 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc7 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 7 A CA 103 2_445 ? ? ? ? ? ? ? 2.311 ? ? metalc8 metalc ? ? A DA 8 OP1 ? ? ? 1_555 I CA . CA ? ? A DA 9 A CA 108 18_335 ? ? ? ? ? ? ? 2.176 ? ? metalc9 metalc ? ? A DT 11 OP1 ? ? ? 1_555 I CA . CA ? ? A DT 12 A CA 108 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc10 metalc ? ? A DG 15 OP1 ? ? ? 1_555 F CA . CA ? ? A DG 16 A CA 105 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc11 metalc ? ? A DC 16 OP1 ? ? ? 1_555 E CA . CA ? ? A DC 17 A CA 104 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc12 metalc ? ? A DC 16 OP1 ? ? ? 1_555 E CA . CA ? ? A DC 17 A CA 104 2_445 ? ? ? ? ? ? ? 2.264 ? ? metalc13 metalc ? ? B CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 252 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc14 metalc ? ? B CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 252 3_445 ? ? ? ? ? ? ? 2.378 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 266 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc16 metalc ? ? C CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 266 3_545 ? ? ? ? ? ? ? 2.340 ? ? metalc17 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 267 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc18 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 267 3_545 ? ? ? ? ? ? ? 2.336 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 256 14_444 ? ? ? ? ? ? ? 2.358 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 206 18_445 ? ? ? ? ? ? ? 2.381 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 239 3_545 ? ? ? ? ? ? ? 2.357 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 259 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc23 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 264 3_545 ? ? ? ? ? ? ? 2.227 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 269 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc25 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 274 1_555 ? ? ? ? ? ? ? 2.593 ? ? metalc26 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 208 1_555 ? ? ? ? ? ? ? 3.086 ? ? metalc27 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 215 18_445 ? ? ? ? ? ? ? 2.583 ? ? metalc28 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 222 17_435 ? ? ? ? ? ? ? 2.446 ? ? metalc29 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 223 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc30 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 249 17_435 ? ? ? ? ? ? ? 2.023 ? ? metalc31 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 272 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc32 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 284 18_445 ? ? ? ? ? ? ? 2.551 ? ? metalc33 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 220 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc34 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 232 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc35 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 254 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc36 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 250 18_345 ? ? ? ? ? ? ? 2.515 ? ? metalc37 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 258 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc38 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 216 17_435 ? ? ? ? ? ? ? 2.189 ? ? metalc39 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 217 1_555 ? ? ? ? ? ? ? 3.146 ? ? metalc40 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 238 1_555 ? ? ? ? ? ? ? 3.130 ? ? metalc41 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 290 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc42 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 291 1_555 ? ? ? ? ? ? ? 2.329 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 2 A DC 17 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 3 A DG 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 4 A DA 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 4 A DA 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 5 A DC 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 6 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 11 N3 ? ? A DA 7 A DT 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 11 O4 ? ? A DA 7 A DT 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 8 A DA 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 8 A DA 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 9 N3 ? ? A DA 9 A DT 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 9 O4 ? ? A DA 9 A DT 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 A DA 8 N1 ? ? A DT 10 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 A DA 8 N6 ? ? A DT 10 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 11 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 11 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 12 A DA 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 12 A DA 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 13 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 14 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 15 A DT 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 15 A DT 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 16 A DC 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 17 A DG 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8F94 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025794 _atom_sites.fract_transf_matrix[1][2] 0.014892 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029784 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006259 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 8.75937 8.41257 2.76798 ? 9.64476 0.47514 97.39057 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 2 2 DG DG A . n A 1 2 DC 2 3 3 DC DC A . n A 1 3 DT 3 4 4 DT DT A . n A 1 4 DG 4 5 5 DG DG A . n A 1 5 DG 5 6 6 DG DG A . n A 1 6 DA 6 7 7 DA DA A . n A 1 7 DT 7 8 8 DT DT A . n A 1 8 DA 8 9 9 DA DA A . n A 1 9 DT 9 10 10 DT DT A . n A 1 10 DA 10 11 11 DA DA A . n A 1 11 DT 11 12 12 DT DT A . n A 1 12 DC 12 13 13 DC DC A . n A 1 13 DC 13 14 14 DC DC A . n A 1 14 DA 14 15 15 DA DA A . n A 1 15 DG 15 16 16 DG DG A . n A 1 16 DC 16 17 17 DC DC A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email wdw@gsu.edu _pdbx_contact_author.name_first W _pdbx_contact_author.name_last Wilson _pdbx_contact_author.name_mi David _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5225-5089 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 1 CA CA A . C 2 CA 1 102 2 CA CA A . D 2 CA 1 103 3 CA CA A . E 2 CA 1 104 4 CA CA A . F 2 CA 1 105 5 CA CA A . G 2 CA 1 106 6 CA CA A . H 2 CA 1 107 7 CA CA A . I 2 CA 1 108 8 CA CA A . J 2 CA 1 109 9 CA CA A . K 3 HOH 1 201 53 HOH HOH A . K 3 HOH 2 202 80 HOH HOH A . K 3 HOH 3 203 32 HOH HOH A . K 3 HOH 4 204 76 HOH HOH A . K 3 HOH 5 205 34 HOH HOH A . K 3 HOH 6 206 45 HOH HOH A . K 3 HOH 7 207 3 HOH HOH A . K 3 HOH 8 208 17 HOH HOH A . K 3 HOH 9 209 50 HOH HOH A . K 3 HOH 10 210 72 HOH HOH A . K 3 HOH 11 211 63 HOH HOH A . K 3 HOH 12 212 30 HOH HOH A . K 3 HOH 13 213 97 HOH HOH A . K 3 HOH 14 214 35 HOH HOH A . K 3 HOH 15 215 28 HOH HOH A . K 3 HOH 16 216 42 HOH HOH A . K 3 HOH 17 217 24 HOH HOH A . K 3 HOH 18 218 88 HOH HOH A . K 3 HOH 19 219 12 HOH HOH A . K 3 HOH 20 220 91 HOH HOH A . K 3 HOH 21 221 22 HOH HOH A . K 3 HOH 22 222 16 HOH HOH A . K 3 HOH 23 223 9 HOH HOH A . K 3 HOH 24 224 73 HOH HOH A . K 3 HOH 25 225 13 HOH HOH A . K 3 HOH 26 226 67 HOH HOH A . K 3 HOH 27 227 78 HOH HOH A . K 3 HOH 28 228 52 HOH HOH A . K 3 HOH 29 229 39 HOH HOH A . K 3 HOH 30 230 55 HOH HOH A . K 3 HOH 31 231 5 HOH HOH A . K 3 HOH 32 232 37 HOH HOH A . K 3 HOH 33 233 27 HOH HOH A . K 3 HOH 34 234 29 HOH HOH A . K 3 HOH 35 235 14 HOH HOH A . K 3 HOH 36 236 23 HOH HOH A . K 3 HOH 37 237 77 HOH HOH A . K 3 HOH 38 238 43 HOH HOH A . K 3 HOH 39 239 4 HOH HOH A . K 3 HOH 40 240 46 HOH HOH A . K 3 HOH 41 241 6 HOH HOH A . K 3 HOH 42 242 10 HOH HOH A . K 3 HOH 43 243 82 HOH HOH A . K 3 HOH 44 244 98 HOH HOH A . K 3 HOH 45 245 47 HOH HOH A . K 3 HOH 46 246 69 HOH HOH A . K 3 HOH 47 247 31 HOH HOH A . K 3 HOH 48 248 18 HOH HOH A . K 3 HOH 49 249 38 HOH HOH A . K 3 HOH 50 250 85 HOH HOH A . K 3 HOH 51 251 40 HOH HOH A . K 3 HOH 52 252 48 HOH HOH A . K 3 HOH 53 253 66 HOH HOH A . K 3 HOH 54 254 51 HOH HOH A . K 3 HOH 55 255 44 HOH HOH A . K 3 HOH 56 256 8 HOH HOH A . K 3 HOH 57 257 89 HOH HOH A . K 3 HOH 58 258 41 HOH HOH A . K 3 HOH 59 259 25 HOH HOH A . K 3 HOH 60 260 74 HOH HOH A . K 3 HOH 61 261 54 HOH HOH A . K 3 HOH 62 262 59 HOH HOH A . K 3 HOH 63 263 75 HOH HOH A . K 3 HOH 64 264 20 HOH HOH A . K 3 HOH 65 265 56 HOH HOH A . K 3 HOH 66 266 2 HOH HOH A . K 3 HOH 67 267 1 HOH HOH A . K 3 HOH 68 268 87 HOH HOH A . K 3 HOH 69 269 7 HOH HOH A . K 3 HOH 70 270 15 HOH HOH A . K 3 HOH 71 271 81 HOH HOH A . K 3 HOH 72 272 90 HOH HOH A . K 3 HOH 73 273 57 HOH HOH A . K 3 HOH 74 274 19 HOH HOH A . K 3 HOH 75 275 86 HOH HOH A . K 3 HOH 76 276 58 HOH HOH A . K 3 HOH 77 277 92 HOH HOH A . K 3 HOH 78 278 49 HOH HOH A . K 3 HOH 79 279 65 HOH HOH A . K 3 HOH 80 280 64 HOH HOH A . K 3 HOH 81 281 60 HOH HOH A . K 3 HOH 82 282 33 HOH HOH A . K 3 HOH 83 283 83 HOH HOH A . K 3 HOH 84 284 21 HOH HOH A . K 3 HOH 85 285 84 HOH HOH A . K 3 HOH 86 286 70 HOH HOH A . K 3 HOH 87 287 36 HOH HOH A . K 3 HOH 88 288 71 HOH HOH A . K 3 HOH 89 289 62 HOH HOH A . K 3 HOH 90 290 95 HOH HOH A . K 3 HOH 91 291 68 HOH HOH A . K 3 HOH 92 292 96 HOH HOH A . K 3 HOH 93 293 79 HOH HOH A . K 3 HOH 94 294 93 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1420 ? 1 MORE -9 ? 1 'SSA (A^2)' 5950 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -44.7665851724 0.0000000000 0.0000000000 -1.0000000000 106.5140000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 101 ? B CA . 2 1 A CA 102 ? C CA . 3 1 A CA 103 ? D CA . 4 1 A CA 104 ? E CA . 5 1 A HOH 231 ? K HOH . 6 1 A HOH 265 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 3 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 OP1 ? A DC 2 ? A DC 3 ? 1_555 0.0 ? 2 OP1 ? A DC 2 ? A DC 3 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 252 ? 1_555 81.0 ? 3 OP1 ? A DC 2 ? A DC 3 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 252 ? 1_555 81.0 ? 4 OP1 ? A DC 2 ? A DC 3 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 174.0 ? 5 OP1 ? A DC 2 ? A DC 3 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 174.0 ? 6 O ? K HOH . ? A HOH 252 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 93.4 ? 7 O6 ? A DG 5 ? A DG 6 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 216 ? 17_435 73.8 ? 8 O6 ? A DG 5 ? A DG 6 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 70.7 ? 9 O ? K HOH . ? A HOH 216 ? 17_435 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 137.1 ? 10 O6 ? A DG 5 ? A DG 6 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 238 ? 1_555 94.7 ? 11 O ? K HOH . ? A HOH 216 ? 17_435 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 238 ? 1_555 153.0 ? 12 O ? K HOH . ? A HOH 217 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 238 ? 1_555 54.2 ? 13 O6 ? A DG 5 ? A DG 6 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 120.5 ? 14 O ? K HOH . ? A HOH 216 ? 17_435 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 163.3 ? 15 O ? K HOH . ? A HOH 217 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 51.8 ? 16 O ? K HOH . ? A HOH 238 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 41.3 ? 17 O6 ? A DG 5 ? A DG 6 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 291 ? 1_555 130.6 ? 18 O ? K HOH . ? A HOH 216 ? 17_435 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 291 ? 1_555 118.5 ? 19 O ? K HOH . ? A HOH 217 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 291 ? 1_555 102.9 ? 20 O ? K HOH . ? A HOH 238 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 291 ? 1_555 51.5 ? 21 O ? K HOH . ? A HOH 290 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 291 ? 1_555 60.5 ? 22 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OP1 ? A DA 6 ? A DA 7 ? 1_555 0.0 ? 23 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 266 ? 1_555 87.5 ? 24 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 266 ? 1_555 87.5 ? 25 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 266 ? 3_545 99.4 ? 26 OP1 ? A DA 6 ? A DA 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 266 ? 3_545 99.4 ? 27 O ? K HOH . ? A HOH 266 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 266 ? 3_545 86.0 ? 28 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP2 ? A DA 6 ? A DA 7 ? 1_555 0.0 ? 29 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 267 ? 1_555 90.1 ? 30 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 267 ? 1_555 90.1 ? 31 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 92.8 ? 32 OP2 ? A DA 6 ? A DA 7 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 92.8 ? 33 O ? K HOH . ? A HOH 267 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 87.6 ? 34 OP1 ? A DA 8 ? A DA 9 ? 1_555 CA ? I CA . ? A CA 108 ? 18_335 OP1 ? A DT 11 ? A DT 12 ? 1_555 65.2 ? 35 OP1 ? A DA 8 ? A DA 9 ? 1_555 CA ? I CA . ? A CA 108 ? 18_335 O ? K HOH . ? A HOH 250 ? 18_345 73.2 ? 36 OP1 ? A DT 11 ? A DT 12 ? 1_555 CA ? I CA . ? A CA 108 ? 18_335 O ? K HOH . ? A HOH 250 ? 18_345 8.2 ? 37 OP1 ? A DA 8 ? A DA 9 ? 1_555 CA ? I CA . ? A CA 108 ? 18_335 O ? K HOH . ? A HOH 258 ? 1_555 66.1 ? 38 OP1 ? A DT 11 ? A DT 12 ? 1_555 CA ? I CA . ? A CA 108 ? 18_335 O ? K HOH . ? A HOH 258 ? 1_555 8.1 ? 39 O ? K HOH . ? A HOH 250 ? 18_345 CA ? I CA . ? A CA 108 ? 18_335 O ? K HOH . ? A HOH 258 ? 1_555 9.9 ? 40 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 206 ? 18_445 93.3 ? 41 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 239 ? 3_545 176.1 ? 42 O ? K HOH . ? A HOH 206 ? 18_445 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 239 ? 3_545 83.4 ? 43 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 259 ? 1_555 79.0 ? 44 O ? K HOH . ? A HOH 206 ? 18_445 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 259 ? 1_555 69.0 ? 45 O ? K HOH . ? A HOH 239 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 259 ? 1_555 97.9 ? 46 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 264 ? 3_545 98.6 ? 47 O ? K HOH . ? A HOH 206 ? 18_445 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 264 ? 3_545 78.7 ? 48 O ? K HOH . ? A HOH 239 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 264 ? 3_545 82.7 ? 49 O ? K HOH . ? A HOH 259 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 264 ? 3_545 147.4 ? 50 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 88.8 ? 51 O ? K HOH . ? A HOH 206 ? 18_445 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 163.4 ? 52 O ? K HOH . ? A HOH 239 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 94.9 ? 53 O ? K HOH . ? A HOH 259 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 127.5 ? 54 O ? K HOH . ? A HOH 264 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 84.7 ? 55 OP1 ? A DG 15 ? A DG 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 102.3 ? 56 O ? K HOH . ? A HOH 206 ? 18_445 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 131.7 ? 57 O ? K HOH . ? A HOH 239 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 78.7 ? 58 O ? K HOH . ? A HOH 259 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 69.6 ? 59 O ? K HOH . ? A HOH 264 ? 3_545 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 141.1 ? 60 O ? K HOH . ? A HOH 269 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 274 ? 1_555 63.5 ? 61 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 OP1 ? A DC 16 ? A DC 17 ? 1_555 0.0 ? 62 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 256 ? 14_444 166.5 ? 63 OP1 ? A DC 16 ? A DC 17 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 256 ? 14_444 166.5 ? 64 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 215 ? 18_445 59.7 ? 65 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 222 ? 17_435 133.1 ? 66 O ? K HOH . ? A HOH 215 ? 18_445 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 222 ? 17_435 152.4 ? 67 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 223 ? 1_555 75.9 ? 68 O ? K HOH . ? A HOH 215 ? 18_445 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 223 ? 1_555 129.8 ? 69 O ? K HOH . ? A HOH 222 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 223 ? 1_555 76.2 ? 70 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 249 ? 17_435 93.7 ? 71 O ? K HOH . ? A HOH 215 ? 18_445 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 249 ? 17_435 75.6 ? 72 O ? K HOH . ? A HOH 222 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 249 ? 17_435 78.9 ? 73 O ? K HOH . ? A HOH 223 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 249 ? 17_435 132.9 ? 74 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 97.8 ? 75 O ? K HOH . ? A HOH 215 ? 18_445 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 88.8 ? 76 O ? K HOH . ? A HOH 222 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 109.9 ? 77 O ? K HOH . ? A HOH 223 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 74.4 ? 78 O ? K HOH . ? A HOH 249 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 152.5 ? 79 O ? K HOH . ? A HOH 208 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 138.2 ? 80 O ? K HOH . ? A HOH 215 ? 18_445 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 78.5 ? 81 O ? K HOH . ? A HOH 222 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 85.3 ? 82 O ? K HOH . ? A HOH 223 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 139.5 ? 83 O ? K HOH . ? A HOH 249 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 76.0 ? 84 O ? K HOH . ? A HOH 272 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 284 ? 18_445 78.8 ? 85 O ? K HOH . ? A HOH 220 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 232 ? 1_555 94.5 ? 86 O ? K HOH . ? A HOH 220 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 254 ? 1_555 113.7 ? 87 O ? K HOH . ? A HOH 232 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 254 ? 1_555 68.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-22 2 'Structure model' 1 1 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8F94 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 238 ? ? O A HOH 290 ? ? 2.07 2 1 O A HOH 201 ? ? O A HOH 273 ? ? 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 13 ? ? "C3'" A DC 13 ? ? 1.381 1.419 -0.038 0.006 N 2 1 N1 A DC 17 ? ? C6 A DC 17 ? ? 1.331 1.367 -0.036 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 109.34 119.60 -10.26 1.50 N 2 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.88 108.30 4.58 0.30 N 3 1 "O5'" A DC 17 ? ? P A DC 17 ? ? OP1 A DC 17 ? ? 118.27 110.70 7.57 1.20 N 4 1 "O5'" A DC 17 ? ? P A DC 17 ? ? OP2 A DC 17 ? ? 96.38 105.70 -9.32 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 6 ? ? 0.052 'SIDE CHAIN' 2 1 DA A 15 ? ? 0.057 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 8F94 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 -0.258 -0.034 0.017 -0.669 -7.746 1.334 1 A_DG2:DC17_A A 2 ? A 17 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.179 -0.159 0.352 -5.639 -10.876 -2.493 2 A_DC3:DG16_A A 3 ? A 16 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 0.002 -0.091 0.128 -3.618 -15.215 0.308 3 A_DT4:DA15_A A 4 ? A 15 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.180 -0.168 -0.211 -6.797 -0.939 -2.011 4 A_DG5:DC14_A A 5 ? A 14 ? 19 1 1 A DG 5 1_555 A DC 12 17_435 -0.139 -0.141 -0.058 5.345 -10.286 1.560 5 A_DG6:DC13_A A 6 ? A 13 ? 19 1 1 A DA 6 1_555 A DT 11 17_435 0.031 -0.137 0.058 5.686 -11.962 1.291 6 A_DA7:DT12_A A 7 ? A 12 ? 20 1 1 A DT 7 1_555 A DA 10 17_435 0.041 -0.151 0.075 8.343 -10.090 2.527 7 A_DT8:DA11_A A 8 ? A 11 ? 20 1 1 A DA 8 1_555 A DT 9 17_435 0.001 -0.095 0.120 -2.346 -9.880 4.714 8 A_DA9:DT10_A A 9 ? A 10 ? 20 1 1 A DT 9 1_555 A DA 8 17_435 -0.001 -0.095 0.120 2.346 -9.880 4.714 9 A_DT10:DA9_A A 10 ? A 9 ? 20 1 1 A DA 10 1_555 A DT 7 17_435 -0.041 -0.151 0.075 -8.343 -10.090 2.527 10 A_DA11:DT8_A A 11 ? A 8 ? 20 1 1 A DT 11 1_555 A DA 6 17_435 -0.031 -0.137 0.058 -5.686 -11.962 1.291 11 A_DT12:DA7_A A 12 ? A 7 ? 20 1 1 A DC 12 1_555 A DG 5 17_435 0.139 -0.141 -0.058 -5.345 -10.286 1.560 12 A_DC13:DG6_A A 13 ? A 6 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.180 -0.168 -0.211 6.797 -0.939 -2.011 13 A_DC14:DG5_A A 14 ? A 5 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 -0.002 -0.091 0.128 3.618 -15.215 0.308 14 A_DA15:DT4_A A 15 ? A 4 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.179 -0.159 0.352 5.639 -10.876 -2.493 15 A_DG16:DC3_A A 16 ? A 3 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 0.258 -0.034 0.017 0.669 -7.746 1.334 16 A_DC17:DG2_A A 17 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.025 -0.525 3.369 -3.975 -0.453 33.453 -0.829 1.091 3.471 -0.783 6.874 33.685 1 AA_DG2DC3:DG16DC17_AA A 2 ? A 17 ? A 3 ? A 16 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.486 0.016 3.243 2.426 2.211 29.130 -0.438 1.476 3.185 4.379 -4.804 29.311 2 AA_DC3DT4:DA15DG16_AA A 3 ? A 16 ? A 4 ? A 15 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 0.600 1.058 3.440 3.777 0.261 43.134 1.407 -0.422 3.484 0.354 -5.125 43.292 3 AA_DT4DG5:DC14DA15_AA A 4 ? A 15 ? A 5 ? A 14 ? 1 A DG 4 1_555 A DC 13 17_435 A DG 5 1_555 A DC 12 17_435 0.877 -0.010 3.182 -2.238 6.062 18.968 -2.728 -3.518 2.915 17.740 6.550 20.029 4 AA_DG5DG6:DC13DC14_AA A 5 ? A 14 ? A 6 ? A 13 ? 1 A DG 5 1_555 A DC 12 17_435 A DA 6 1_555 A DT 11 17_435 -0.925 0.200 3.260 -3.041 -1.501 41.646 0.439 0.976 3.308 -2.107 4.269 41.777 5 AA_DG6DA7:DT12DC13_AA A 6 ? A 13 ? A 7 ? A 12 ? 1 A DA 6 1_555 A DT 11 17_435 A DT 7 1_555 A DA 10 17_435 0.413 -0.491 3.235 -0.298 -2.424 31.019 -0.455 -0.827 3.259 -4.525 0.557 31.113 6 AA_DA7DT8:DA11DT12_AA A 7 ? A 12 ? A 8 ? A 11 ? 1 A DT 7 1_555 A DA 10 17_435 A DA 8 1_555 A DT 9 17_435 -0.038 -0.100 3.477 -0.341 -0.610 41.442 -0.072 0.015 3.478 -0.862 0.482 41.448 7 AA_DT8DA9:DT10DA11_AA A 8 ? A 11 ? A 9 ? A 10 ? 1 A DA 8 1_555 A DT 9 17_435 A DT 9 1_555 A DA 8 17_435 0.000 -0.454 3.175 0.000 -4.949 31.404 0.061 0.000 3.207 -9.073 0.000 31.782 8 AA_DA9DT10:DA9DT10_AA A 9 ? A 10 ? A 10 ? A 9 ? 1 A DT 9 1_555 A DA 8 17_435 A DA 10 1_555 A DT 7 17_435 0.038 -0.100 3.477 0.341 -0.610 41.442 -0.072 -0.015 3.478 -0.862 -0.482 41.448 9 AA_DT10DA11:DT8DA9_AA A 10 ? A 9 ? A 11 ? A 8 ? 1 A DA 10 1_555 A DT 7 17_435 A DT 11 1_555 A DA 6 17_435 -0.413 -0.491 3.235 0.298 -2.424 31.019 -0.455 0.827 3.259 -4.525 -0.557 31.113 10 AA_DA11DT12:DA7DT8_AA A 11 ? A 8 ? A 12 ? A 7 ? 1 A DT 11 1_555 A DA 6 17_435 A DC 12 1_555 A DG 5 17_435 0.925 0.200 3.260 3.041 -1.501 41.646 0.439 -0.976 3.308 -2.107 -4.269 41.777 11 AA_DT12DC13:DG6DA7_AA A 12 ? A 7 ? A 13 ? A 6 ? 1 A DC 12 1_555 A DG 5 17_435 A DC 13 1_555 A DG 4 17_435 -0.877 -0.010 3.182 2.238 6.062 18.968 -2.728 3.518 2.915 17.740 -6.550 20.029 12 AA_DC13DC14:DG5DG6_AA A 13 ? A 6 ? A 14 ? A 5 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 -0.600 1.058 3.440 -3.777 0.261 43.134 1.407 0.422 3.484 0.354 5.125 43.292 13 AA_DC14DA15:DT4DG5_AA A 14 ? A 5 ? A 15 ? A 4 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.486 0.016 3.243 -2.426 2.211 29.130 -0.438 -1.476 3.185 4.379 4.804 29.311 14 AA_DA15DG16:DC3DT4_AA A 15 ? A 4 ? A 16 ? A 3 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.025 -0.525 3.369 3.975 -0.453 33.453 -0.829 -1.091 3.471 -0.783 -6.874 33.685 15 AA_DG16DC17:DG2DC3_AA A 16 ? A 3 ? A 17 ? A 2 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM111749 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6QT5 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal _space_group.id 1 #