HEADER DNA 23-NOV-22 8F94 TITLE STRUCTURE OF AN ALTERNATING AT 16-MER: 5'-GCTGGATATATCCAGC-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA 16-MER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 4 ORGANISM_TAXID: 2853804 KEYWDS DNA, AT SEQUENCE, MINOR GROOVE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.TERRELL,E.N.OGBONNA,W.D.WILSON REVDAT 2 30-AUG-23 8F94 1 JRNL REVDAT 1 22-FEB-23 8F94 0 JRNL AUTH E.N.OGBONNA,A.PAUL,A.A.FARAHAT,J.R.TERRELL,E.MINEVA, JRNL AUTH 2 V.OGBONNA,D.W.BOYKIN,W.D.WILSON JRNL TITL X-RAY STRUCTURE CHARACTERIZATION OF THE SELECTIVE JRNL TITL 2 RECOGNITION OF AT BASE PAIR SEQUENCES. JRNL REF ACS BIO MED CHEM AU V. 3 335 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37599788 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.3C00002 REMARK 2 REMARK 2 RESOLUTION. 1.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6300 - 2.6000 0.99 1415 157 0.2322 0.2532 REMARK 3 2 2.6000 - 2.0700 1.00 1349 150 0.2154 0.2113 REMARK 3 3 2.0700 - 1.8000 1.00 1328 147 0.1724 0.2077 REMARK 3 4 1.8000 - 1.6400 0.99 1311 146 0.1469 0.1872 REMARK 3 5 1.6400 - 1.5200 0.99 1290 143 0.1619 0.1901 REMARK 3 6 1.5200 - 1.4300 0.99 1298 144 0.1616 0.2196 REMARK 3 7 1.4300 - 1.3600 0.99 1306 145 0.1612 0.1896 REMARK 3 8 1.3600 - 1.3000 0.99 1275 139 0.1610 0.2076 REMARK 3 9 1.3000 - 1.2500 0.99 1265 141 0.1684 0.1850 REMARK 3 10 1.2500 - 1.2100 0.98 1264 140 0.1915 0.2275 REMARK 3 11 1.2100 - 1.1700 0.97 1245 138 0.1919 0.2124 REMARK 3 12 1.1700 - 1.1400 0.96 1245 137 0.1892 0.2239 REMARK 3 13 1.1400 - 1.1100 0.94 1209 135 0.2177 0.2329 REMARK 3 14 1.1100 - 1.0800 0.93 1204 134 0.2522 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.111 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.756 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 364 REMARK 3 ANGLE : 2.065 560 REMARK 3 CHIRALITY : 0.119 63 REMARK 3 PLANARITY : 0.034 16 REMARK 3 DIHEDRAL : 33.280 156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : HORIZONTAL DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.080 REMARK 200 RESOLUTION RANGE LOW (A) : 26.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01722 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14790 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM DNA DUPLEX ANNEALED IN 7.5 MM REMARK 280 HEPES, PH=6.6 MIXED AT A 1:1 RATIO WITH WELL SOLUTION CONTAINING REMARK 280 10 MM HEPES, PH=8.6, 600 MM CACL2, 38% PEG200, PH 8.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 19.38450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 11.19165 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.25700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 19.38450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 11.19165 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.25700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 19.38450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 11.19165 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.25700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 19.38450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 11.19165 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.25700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 19.38450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 11.19165 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.25700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 19.38450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 11.19165 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.25700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 22.38329 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 106.51400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 22.38329 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 106.51400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 22.38329 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 106.51400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 22.38329 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.51400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 22.38329 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 106.51400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 22.38329 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 106.51400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -44.76659 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.51400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 101 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 102 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 103 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 104 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 231 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 265 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 238 O HOH A 290 2.07 REMARK 500 O HOH A 201 O HOH A 273 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 13 O3' DC A 13 C3' -0.038 REMARK 500 DC A 17 N1 DC A 17 C6 -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 5 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC A 17 O5' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DC A 17 O5' - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 6 0.05 SIDE CHAIN REMARK 500 DA A 15 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 3 OP1 REMARK 620 2 DC A 3 OP1 0.0 REMARK 620 3 HOH A 252 O 81.0 81.0 REMARK 620 4 HOH A 252 O 174.0 174.0 93.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 109 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 O6 REMARK 620 2 HOH A 216 O 73.8 REMARK 620 3 HOH A 217 O 70.7 137.1 REMARK 620 4 HOH A 238 O 94.7 153.0 54.2 REMARK 620 5 HOH A 290 O 120.5 163.3 51.8 41.3 REMARK 620 6 HOH A 291 O 130.6 118.5 102.9 51.5 60.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP1 REMARK 620 2 DA A 7 OP1 0.0 REMARK 620 3 HOH A 266 O 87.5 87.5 REMARK 620 4 HOH A 266 O 99.4 99.4 86.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP2 REMARK 620 2 DA A 7 OP2 0.0 REMARK 620 3 HOH A 267 O 90.1 90.1 REMARK 620 4 HOH A 267 O 92.8 92.8 87.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 9 OP1 REMARK 620 2 DT A 12 OP1 65.2 REMARK 620 3 HOH A 250 O 73.2 8.2 REMARK 620 4 HOH A 258 O 66.1 8.1 9.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 16 OP1 REMARK 620 2 HOH A 206 O 93.3 REMARK 620 3 HOH A 239 O 176.1 83.4 REMARK 620 4 HOH A 259 O 79.0 69.0 97.9 REMARK 620 5 HOH A 264 O 98.6 78.7 82.7 147.4 REMARK 620 6 HOH A 269 O 88.8 163.4 94.9 127.5 84.7 REMARK 620 7 HOH A 274 O 102.3 131.7 78.7 69.6 141.1 63.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 17 OP1 REMARK 620 2 DC A 17 OP1 0.0 REMARK 620 3 HOH A 256 O 166.5 166.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 106 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 215 O 59.7 REMARK 620 3 HOH A 222 O 133.1 152.4 REMARK 620 4 HOH A 223 O 75.9 129.8 76.2 REMARK 620 5 HOH A 249 O 93.7 75.6 78.9 132.9 REMARK 620 6 HOH A 272 O 97.8 88.8 109.9 74.4 152.5 REMARK 620 7 HOH A 284 O 138.2 78.5 85.3 139.5 76.0 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 107 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 HOH A 232 O 94.5 REMARK 620 3 HOH A 254 O 113.7 68.7 REMARK 620 N 1 2 DBREF 8F94 A 2 17 PDB 8F94 8F94 2 17 SEQRES 1 A 16 DG DC DT DG DG DA DT DA DT DA DT DC DC SEQRES 2 A 16 DA DG DC HET CA A 101 1 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET CA A 105 1 HET CA A 106 1 HET CA A 107 1 HET CA A 108 1 HET CA A 109 1 HETNAM CA CALCIUM ION FORMUL 2 CA 9(CA 2+) FORMUL 11 HOH *94(H2 O) LINK OP1 DC A 3 CA CA A 101 1555 1555 2.38 LINK OP1 DC A 3 CA CA A 101 1555 2455 2.36 LINK O6 DG A 6 CA CA A 109 1555 1555 2.75 LINK OP1 DA A 7 CA CA A 102 1555 1555 2.29 LINK OP1 DA A 7 CA CA A 102 1555 2445 2.30 LINK OP2 DA A 7 CA CA A 103 1555 1555 2.25 LINK OP2 DA A 7 CA CA A 103 1555 2445 2.31 LINK OP1 DA A 9 CA CA A 108 1555 18335 2.18 LINK OP1 DT A 12 CA CA A 108 1555 1555 2.17 LINK OP1 DG A 16 CA CA A 105 1555 1555 2.33 LINK OP1 DC A 17 CA CA A 104 1555 1555 2.32 LINK OP1 DC A 17 CA CA A 104 1555 2445 2.26 LINK CA CA A 101 O HOH A 252 1555 1555 2.37 LINK CA CA A 101 O HOH A 252 1555 3445 2.38 LINK CA CA A 102 O HOH A 266 1555 1555 2.36 LINK CA CA A 102 O HOH A 266 1555 3545 2.34 LINK CA CA A 103 O HOH A 267 1555 1555 2.38 LINK CA CA A 103 O HOH A 267 1555 3545 2.34 LINK CA CA A 104 O HOH A 256 1555 14444 2.36 LINK CA CA A 105 O HOH A 206 1555 18445 2.38 LINK CA CA A 105 O HOH A 239 1555 3545 2.36 LINK CA CA A 105 O HOH A 259 1555 1555 2.54 LINK CA CA A 105 O HOH A 264 1555 3545 2.23 LINK CA CA A 105 O HOH A 269 1555 1555 2.41 LINK CA CA A 105 O HOH A 274 1555 1555 2.59 LINK CA CA A 106 O HOH A 208 1555 1555 3.09 LINK CA CA A 106 O HOH A 215 1555 18445 2.58 LINK CA CA A 106 O HOH A 222 1555 17435 2.45 LINK CA CA A 106 O HOH A 223 1555 1555 2.32 LINK CA CA A 106 O HOH A 249 1555 17435 2.02 LINK CA CA A 106 O HOH A 272 1555 1555 2.23 LINK CA CA A 106 O HOH A 284 1555 18445 2.55 LINK CA CA A 107 O HOH A 220 1555 1555 2.16 LINK CA CA A 107 O HOH A 232 1555 1555 2.23 LINK CA CA A 107 O HOH A 254 1555 1555 2.78 LINK CA CA A 108 O HOH A 250 1555 18345 2.52 LINK CA CA A 108 O HOH A 258 1555 1555 2.60 LINK CA CA A 109 O HOH A 216 1555 17435 2.19 LINK CA CA A 109 O HOH A 217 1555 1555 3.15 LINK CA CA A 109 O HOH A 238 1555 1555 3.13 LINK CA CA A 109 O HOH A 290 1555 1555 2.36 LINK CA CA A 109 O HOH A 291 1555 1555 2.33 CRYST1 38.769 38.769 159.771 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025794 0.014892 0.000000 0.00000 SCALE2 0.000000 0.029784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006259 0.00000