HEADER HYDROLASE 24-NOV-22 8F9O TITLE DOG SIALIC ACID ESTERASE (SIAE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIC ACID ACETYLESTERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.1.53; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS SIALIC ACID, SIALATE O-ACETYLESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.IDE,A.GORELIK,K.ILLES,B.NAGAR REVDAT 1 29-MAY-24 8F9O 0 JRNL AUTH D.IDE,A.GORELIK,K.ILLES,B.NAGAR JRNL TITL DOG SIALIC ACID ESTERASE (SIAE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.4 REMARK 3 NUMBER OF REFLECTIONS : 278210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.103 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8500 - 3.5000 1.00 18549 212 0.1275 0.1313 REMARK 3 2 3.5000 - 2.7800 1.00 18520 207 0.1092 0.1068 REMARK 3 3 2.7800 - 2.4300 1.00 18536 205 0.1006 0.1348 REMARK 3 4 2.4300 - 2.2000 1.00 18534 199 0.0827 0.1180 REMARK 3 5 2.2000 - 2.0500 1.00 18501 204 0.0797 0.0794 REMARK 3 6 2.0500 - 1.9300 1.00 18464 199 0.0760 0.1059 REMARK 3 7 1.9300 - 1.8300 0.99 18464 200 0.0778 0.1065 REMARK 3 8 1.8300 - 1.7500 0.99 18309 198 0.0833 0.1172 REMARK 3 9 1.7500 - 1.6800 0.96 17803 198 0.0812 0.0984 REMARK 3 10 1.6800 - 1.6200 0.86 15958 178 0.0813 0.1122 REMARK 3 11 1.6200 - 1.5700 0.73 13581 152 0.0828 0.1162 REMARK 3 12 1.5700 - 1.5300 0.63 11727 128 0.0842 0.1039 REMARK 3 13 1.5300 - 1.4900 0.56 10338 117 0.1022 0.1268 REMARK 3 14 1.4900 - 1.4500 0.51 9532 104 0.1349 0.1812 REMARK 3 15 1.4500 - 1.4200 0.49 9119 97 0.1472 0.1747 REMARK 3 16 1.4200 - 1.3900 0.48 8807 101 0.1577 0.1899 REMARK 3 17 1.3900 - 1.3600 0.45 8392 89 0.1745 0.2110 REMARK 3 18 1.3600 - 1.3400 0.40 7406 77 0.1929 0.1773 REMARK 3 19 1.3400 - 1.3100 0.33 6104 64 0.2185 0.3026 REMARK 3 20 1.3100 - 1.2900 0.24 4517 45 0.2682 0.2826 REMARK 3 21 1.2900 - 1.2700 0.14 2522 27 0.3471 0.3922 REMARK 3 22 1.2700 - 1.2500 0.08 1510 16 0.3974 0.4429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.072 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4244 REMARK 3 ANGLE : 1.408 5797 REMARK 3 CHIRALITY : 0.110 675 REMARK 3 PLANARITY : 0.012 720 REMARK 3 DIHEDRAL : 13.521 1583 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 413696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M TRI-SODIUM CITRATE, 16% W/V REMARK 280 PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.85100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.24000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.12150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.85100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.24000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.12150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.85100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.24000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.12150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.85100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.24000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.12150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1124 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1253 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 15 REMARK 465 ARG A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 23 O HOH A 704 1.26 REMARK 500 HE ARG A 28 O HOH A 707 1.45 REMARK 500 O HOH A 1210 O HOH A 1282 1.71 REMARK 500 O HOH A 1100 O HOH A 1243 1.73 REMARK 500 O HOH A 1154 O HOH A 1380 1.79 REMARK 500 O HOH A 1294 O HOH A 1376 1.80 REMARK 500 O HOH A 1246 O HOH A 1397 1.81 REMARK 500 O HOH A 862 O HOH A 1304 1.82 REMARK 500 OE1 GLU A 164 O HOH A 701 1.84 REMARK 500 O HOH A 814 O HOH A 840 1.84 REMARK 500 O HOH A 1436 O HOH A 1441 1.84 REMARK 500 O HOH A 762 O HOH A 848 1.85 REMARK 500 O HOH A 1064 O HOH A 1358 1.89 REMARK 500 OD1 ASP A 174 O HOH A 702 1.90 REMARK 500 O HOH A 1431 O HOH A 1436 1.90 REMARK 500 O HOH A 1361 O HOH A 1422 1.91 REMARK 500 O HOH A 1064 O HOH A 1074 1.92 REMARK 500 OD2 ASP A 333 O HOH A 703 1.95 REMARK 500 O HOH A 948 O HOH A 1018 1.96 REMARK 500 O HOH A 1411 O HOH A 1422 1.98 REMARK 500 O HOH A 1182 O HOH A 1294 2.02 REMARK 500 O HOH A 729 O HOH A 1338 2.03 REMARK 500 O HOH A 931 O HOH A 1317 2.03 REMARK 500 NZ LYS A 23 O HOH A 704 2.03 REMARK 500 O HOH A 731 O HOH A 1270 2.05 REMARK 500 O HOH A 1547 O HOH A 1550 2.06 REMARK 500 O HOH A 1272 O HOH A 1292 2.08 REMARK 500 O HOH A 1465 O HOH A 1514 2.09 REMARK 500 O HOH A 1276 O HOH A 1339 2.10 REMARK 500 O HOH A 1293 O HOH A 1363 2.10 REMARK 500 O HOH A 1303 O HOH A 1431 2.10 REMARK 500 O HOH A 1263 O HOH A 1381 2.11 REMARK 500 O HOH A 1381 O HOH A 1408 2.11 REMARK 500 O HOH A 752 O HOH A 1404 2.12 REMARK 500 O HOH A 1280 O HOH A 1343 2.14 REMARK 500 O HOH A 839 O HOH A 1154 2.15 REMARK 500 O HOH A 1320 O HOH A 1428 2.16 REMARK 500 O HOH A 709 O HOH A 977 2.16 REMARK 500 O HOH A 1177 O HOH A 1428 2.16 REMARK 500 O HOH A 1228 O HOH A 1263 2.18 REMARK 500 O6 NAG B 2 O HOH A 1548 2.18 REMARK 500 O HOH A 1010 O HOH A 1268 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1513 O HOH A 1513 3556 2.04 REMARK 500 O HOH A 704 O HOH A 704 4555 2.04 REMARK 500 O HOH A 1001 O HOH A 1001 3556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 34 CG ASN A 34 ND2 -0.178 REMARK 500 GLU A 164 CG GLU A 164 CD 0.102 REMARK 500 SER A 425 CB SER A 425 OG 0.106 REMARK 500 CYS A 485 CB CYS A 485 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 -112.46 55.59 REMARK 500 HIS A 79 -58.93 81.73 REMARK 500 GLN A 127 -149.64 -107.05 REMARK 500 GLN A 191 -92.46 -102.51 REMARK 500 SER A 256 -0.26 72.25 REMARK 500 ILE A 263 -54.02 -122.84 REMARK 500 PHE A 316 50.65 -114.68 REMARK 500 SER A 325 -164.66 -76.35 REMARK 500 HIS A 377 71.53 -118.78 REMARK 500 LEU A 414 79.60 -112.18 REMARK 500 GLN A 433 105.72 -162.20 REMARK 500 HIS A 470 70.66 -104.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1528 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1530 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1531 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1532 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1533 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1534 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A1535 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1536 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1538 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1543 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH A1545 DISTANCE = 8.59 ANGSTROMS REMARK 525 HOH A1547 DISTANCE = 9.46 ANGSTROMS REMARK 525 HOH A1550 DISTANCE = 11.22 ANGSTROMS DBREF1 8F9O A 25 510 UNP A0A8C0LZX8_CANLF DBREF2 8F9O A A0A8C0LZX8 114 599 SEQADV 8F9O ASP A 15 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O ARG A 16 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 17 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 18 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 19 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 20 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 21 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O HIS A 22 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O LYS A 23 UNP A0A8C0LZX EXPRESSION TAG SEQADV 8F9O LEU A 24 UNP A0A8C0LZX EXPRESSION TAG SEQRES 1 A 496 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU VAL GLY PHE SEQRES 2 A 496 ARG PHE ALA SER TYR ILE ASN ASN TYR MET VAL LEU GLN SEQRES 3 A 496 LYS GLU PRO ALA GLY ALA VAL ILE TRP GLY TYR GLY THR SEQRES 4 A 496 SER GLU ALA THR VAL THR VAL THR LEU TYR ARG ASP GLN SEQRES 5 A 496 GLU THR ILE MET GLU LYS VAL THR SER VAL LYS ALA HIS SEQRES 6 A 496 SER ASN SER TRP MET VAL VAL LEU ASP PRO MET LYS PRO SEQRES 7 A 496 GLY GLY PRO TYR GLU VAL MET ALA GLN GLN THR PHE GLY SEQRES 8 A 496 LYS THR ASN PHE THR LEU ARG VAL HIS ASP VAL LEU PHE SEQRES 9 A 496 GLY ASP VAL TRP LEU CYS SER GLY GLN SER ASN MET GLN SEQRES 10 A 496 MET THR VAL SER GLN ILE PHE ASN ALA THR ARG GLU LEU SEQRES 11 A 496 ALA ASN THR ALA ALA TYR GLN SER VAL ARG ILE PHE SER SEQRES 12 A 496 VAL SER LEU ILE GLN ALA GLU GLN GLU LEU GLU ASP LEU SEQRES 13 A 496 ALA LYS VAL ASP LEU GLN TRP ALA LYS PRO THR THR GLU SEQRES 14 A 496 ASN LEU GLY HIS GLY ILE PHE GLN TYR MET SER ALA VAL SEQRES 15 A 496 CYS TRP LEU PHE GLY ARG ASN LEU TYR ASP THR LEU GLN SEQRES 16 A 496 TYR PRO ILE GLY LEU ILE SER SER SER TRP GLY GLY THR SEQRES 17 A 496 PRO ILE GLU ALA TRP SER SER GLU ARG SER LEU LYS ALA SEQRES 18 A 496 CYS GLY VAL PRO THR GLN GLY PHE THR GLN SER ASN SER SEQRES 19 A 496 VAL THR GLY PRO SER ASN HIS SER VAL LEU TRP ASN ALA SEQRES 20 A 496 MET ILE HIS PRO LEU HIS ASN MET THR LEU LYS GLY VAL SEQRES 21 A 496 ILE TRP TYR GLN GLY GLU SER ASN MET ASN PHE ASN ARG SEQRES 22 A 496 ASP LEU TYR ASN CYS THR PHE PRO ALA LEU ILE GLU ASP SEQRES 23 A 496 TRP ARG GLN THR PHE HIS HIS GLY SER GLN GLY GLN THR SEQRES 24 A 496 GLU ARG PHE PHE PRO PHE GLY PHE VAL GLN LEU SER SER SEQRES 25 A 496 TYR LEU SER ALA PRO SER ASP ASP THR PHE PRO GLN ILE SEQRES 26 A 496 ARG TRP HIS GLN THR ALA ASP PHE GLY TYR VAL PRO ASN SEQRES 27 A 496 LEU ARG MET PRO ASN THR PHE MET ALA VAL ALA MET ASP SEQRES 28 A 496 LEU CYS ASP ARG LYS SER PRO PHE GLY SER ILE HIS PRO SEQRES 29 A 496 ARG ASP LYS GLN THR VAL ALA TYR ARG LEU HIS LEU GLY SEQRES 30 A 496 ALA ARG ALA VAL ALA TYR GLY GLU LYS VAL ILE PHE GLN SEQRES 31 A 496 GLY PRO LEU PRO GLU LYS MET GLU LEU LEU ALA ASP LYS SEQRES 32 A 496 GLY LEU LEU ASN LEU MET TYR SER GLN GLU ILE GLN VAL SEQRES 33 A 496 GLN ARG GLN ASP LYS ILE PHE GLU ILE SER CYS CYS SER SEQRES 34 A 496 ASP HIS GLN CYS LYS TRP LEU PRO ALA PRO MET ASP ALA SEQRES 35 A 496 PHE SER ALA GLN THR LEU THR LEU SER THR GLY SER CYS SEQRES 36 A 496 HIS GLY THR LEU ALA ALA VAL ARG TYR ALA TRP ALA THR SEQRES 37 A 496 TRP PRO CYS GLU TYR LYS GLN CYS PRO ILE TYR HIS PRO SEQRES 38 A 496 SER SER THR LEU PRO ALA PRO PRO PHE ILE ALA PHE MET SEQRES 39 A 496 THR ASN HET NAG B 1 25 HET NAG B 2 26 HET BMA B 3 19 HET MAN B 4 21 HET MAN B 5 21 HET FUC B 6 20 HET NAG C 1 26 HET NAG C 2 26 HET BMA C 3 20 HET MAN C 4 21 HET NAG D 1 26 HET NAG D 2 26 HET BMA D 3 21 HET NAG E 1 26 HET NAG E 2 27 HET NAG A 601 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 2 MAN 3(C6 H12 O6) FORMUL 2 FUC C6 H12 O5 FORMUL 7 HOH *850(H2 O) HELIX 1 AA1 GLN A 127 MET A 132 1 6 HELIX 2 AA2 THR A 133 ILE A 137 5 5 HELIX 3 AA3 ASN A 139 ASN A 146 1 8 HELIX 4 AA4 THR A 147 GLN A 151 5 5 HELIX 5 AA5 THR A 181 GLY A 186 1 6 HELIX 6 AA6 SER A 194 GLN A 209 1 16 HELIX 7 AA7 PRO A 223 SER A 228 5 6 HELIX 8 AA8 SER A 229 CYS A 236 1 8 HELIX 9 AA9 SER A 256 ILE A 263 1 8 HELIX 10 AB1 HIS A 264 HIS A 267 5 4 HELIX 11 AB2 GLY A 279 MET A 283 5 5 HELIX 12 AB3 ASN A 286 ASP A 288 5 3 HELIX 13 AB4 LEU A 289 SER A 309 1 21 HELIX 14 AB5 ASP A 334 GLN A 343 1 10 HELIX 15 AB6 LYS A 381 ALA A 396 1 16 SHEET 1 AA1 3 ARG A 28 PHE A 29 0 SHEET 2 AA1 3 VAL A 47 TYR A 51 -1 O TYR A 51 N ARG A 28 SHEET 3 AA1 3 SER A 82 VAL A 86 -1 O VAL A 85 N ILE A 48 SHEET 1 AA2 5 VAL A 38 GLN A 40 0 SHEET 2 AA2 5 THR A 107 GLY A 126 1 O LEU A 117 N LEU A 39 SHEET 3 AA2 5 ILE A 212 SER A 218 1 O ILE A 215 N CYS A 124 SHEET 4 AA2 5 VAL A 153 VAL A 158 1 N VAL A 158 O SER A 216 SHEET 5 AA2 5 VAL A 173 ALA A 178 -1 O LEU A 175 N SER A 157 SHEET 1 AA3 7 GLU A 67 SER A 75 0 SHEET 2 AA3 7 THR A 57 ARG A 64 -1 N LEU A 62 O ILE A 69 SHEET 3 AA3 7 GLY A 93 PHE A 104 -1 O GLU A 97 N TYR A 63 SHEET 4 AA3 7 THR A 107 GLY A 126 -1 O PHE A 109 N GLN A 102 SHEET 5 AA3 7 GLY A 273 TYR A 277 1 O ILE A 275 N SER A 125 SHEET 6 AA3 7 PHE A 319 VAL A 322 1 O GLY A 320 N VAL A 274 SHEET 7 AA3 7 THR A 358 ALA A 361 1 O ALA A 361 N PHE A 321 SHEET 1 AA4 4 PRO A 408 LEU A 414 0 SHEET 2 AA4 4 LEU A 419 TYR A 424 -1 O MET A 423 N GLU A 409 SHEET 3 AA4 4 THR A 461 SER A 465 -1 O LEU A 464 N LEU A 420 SHEET 4 AA4 4 MET A 454 PHE A 457 -1 N ASP A 455 O THR A 463 SHEET 1 AA5 2 GLN A 429 VAL A 430 0 SHEET 2 AA5 2 ILE A 492 TYR A 493 -1 O TYR A 493 N GLN A 429 SHEET 1 AA6 4 GLN A 446 PRO A 451 0 SHEET 2 AA6 4 PHE A 437 SER A 443 -1 N CYS A 441 O LYS A 448 SHEET 3 AA6 4 THR A 472 TYR A 478 -1 O THR A 472 N CYS A 442 SHEET 4 AA6 4 PHE A 504 PHE A 507 -1 O ALA A 506 N VAL A 476 SSBOND 1 CYS A 124 CYS A 197 1555 1555 2.12 SSBOND 2 CYS A 236 CYS A 292 1555 1555 2.17 SSBOND 3 CYS A 441 CYS A 469 1555 1555 2.14 SSBOND 4 CYS A 442 CYS A 447 1555 1555 2.08 SSBOND 5 CYS A 485 CYS A 490 1555 1555 2.30 LINK ND2 ASN A 108 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 139 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 254 C1 NAG A 601 1555 1555 1.46 LINK ND2 ASN A 268 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 291 C1 NAG E 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 6 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.41 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 CISPEP 1 GLU A 42 PRO A 43 0 8.54 CISPEP 2 GLY A 94 PRO A 95 0 10.59 CISPEP 3 TYR A 192 MET A 193 0 -1.55 CISPEP 4 VAL A 350 PRO A 351 0 0.11 CRYST1 111.702 112.480 122.243 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008180 0.00000