HEADER LIGASE 25-NOV-22 8FA3 TITLE STRUCTURE OF N-TERMINAL OF SCHISTOSOMA JAPONICUM ASPARAGINYL-TRNA TITLE 2 SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARAGINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-114; COMPND 5 SYNONYM: TRNA SYNTHETASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM; SOURCE 3 ORGANISM_TAXID: 6182; SOURCE 4 GENE: NARS-PROV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-HAIRPIN, N-TERMINAL EXTENSION, INTRINSICALLY DISORDERED REGION, KEYWDS 2 LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.PECK,N.L.DALY,M.MOBLI REVDAT 2 15-MAY-24 8FA3 1 REMARK REVDAT 1 06-SEP-23 8FA3 0 JRNL AUTH Y.PECK,D.PICKERING,M.MOBLI,M.J.LIDDELL,D.T.WILSON,R.RUSCHER, JRNL AUTH 2 S.RYAN,G.BUITRAGO,C.MCHUGH,N.C.LOVE,T.PINLAC,M.HAERTLEIN, JRNL AUTH 3 M.A.KRON,A.LOUKAS,N.L.DALY JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL EXTENSION DOMAIN OF A JRNL TITL 2 SCHISTOSOMA JAPONICUM ASPARAGINYL-TRNA SYNTHETASE. JRNL REF J.BIOMOL.STRUCT.DYN. 1 2023 JRNL REFN ESSN 1538-0254 JRNL PMID 37572327 JRNL DOI 10.1080/07391102.2023.2241918 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270260. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : PBS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1 MM [U-100% 13C; U-100% 15N] REMARK 210 N-TERMINAL TRNA SYNTHETASE, 90% REMARK 210 PBS/10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 7 HZ2 LYS A 60 1.53 REMARK 500 OD1 ASP A 12 HZ3 LYS A 24 1.54 REMARK 500 OE2 GLU A 110 HZ1 LYS A 112 1.55 REMARK 500 OD1 ASP A 34 HZ3 LYS A 73 1.55 REMARK 500 HZ2 LYS A 32 OE2 GLU A 81 1.56 REMARK 500 HZ1 LYS A 74 OE1 GLU A 76 1.57 REMARK 500 OD1 ASP A 105 HZ2 LYS A 107 1.58 REMARK 500 OE1 GLU A 110 HE2 HIS A 120 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 18 -165.84 -112.92 REMARK 500 1 LYS A 74 -161.06 -101.38 REMARK 500 1 LYS A 77 146.50 -172.38 REMARK 500 1 PRO A 79 -152.73 -73.67 REMARK 500 1 VAL A 84 -67.70 66.64 REMARK 500 1 SER A 85 120.58 72.66 REMARK 500 1 ASN A 91 -47.14 -166.17 REMARK 500 1 VAL A 92 -95.96 60.39 REMARK 500 1 LEU A 94 -62.04 -106.57 REMARK 500 1 SER A 95 19.07 -153.73 REMARK 500 1 LEU A 102 54.95 -100.95 REMARK 500 1 LYS A 112 75.87 55.71 REMARK 500 1 GLU A 113 -80.99 -39.15 REMARK 500 1 HIS A 118 2.87 -152.49 REMARK 500 1 HIS A 119 174.73 178.59 REMARK 500 2 THR A 18 -169.35 -107.12 REMARK 500 2 LYS A 73 88.58 -56.05 REMARK 500 2 LYS A 74 34.23 -152.41 REMARK 500 2 LYS A 77 -73.92 71.29 REMARK 500 2 PRO A 79 48.70 -78.02 REMARK 500 2 GLU A 81 61.18 64.90 REMARK 500 2 TYR A 86 78.08 56.77 REMARK 500 2 ASN A 88 -61.15 73.07 REMARK 500 2 ASN A 91 21.42 -142.60 REMARK 500 2 VAL A 92 -154.71 44.04 REMARK 500 2 ASN A 93 -81.06 65.56 REMARK 500 2 LEU A 104 59.91 -112.79 REMARK 500 2 THR A 106 51.14 -116.63 REMARK 500 2 LEU A 108 160.89 70.34 REMARK 500 2 ALA A 111 99.23 -66.40 REMARK 500 2 LYS A 112 47.35 -87.76 REMARK 500 2 GLU A 113 -67.09 -93.20 REMARK 500 3 THR A 18 -165.65 -115.96 REMARK 500 3 LYS A 74 -146.34 43.03 REMARK 500 3 GLN A 75 49.60 177.07 REMARK 500 3 GLU A 76 -67.07 -137.34 REMARK 500 3 ASP A 90 128.58 73.35 REMARK 500 3 ASN A 91 145.67 -178.21 REMARK 500 3 LEU A 102 65.31 -112.12 REMARK 500 4 THR A 18 -169.75 -102.61 REMARK 500 4 HIS A 80 -59.74 69.32 REMARK 500 4 SER A 95 30.75 -95.03 REMARK 500 4 GLN A 101 -78.99 -126.64 REMARK 500 4 ASP A 105 -78.53 -97.31 REMARK 500 4 LEU A 108 -67.56 -109.26 REMARK 500 4 PRO A 109 -157.49 -90.30 REMARK 500 4 GLU A 113 157.93 74.68 REMARK 500 4 HIS A 115 80.94 -67.08 REMARK 500 4 HIS A 117 57.53 177.77 REMARK 500 4 HIS A 119 -39.40 -173.97 REMARK 500 REMARK 500 THIS ENTRY HAS 245 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31060 RELATED DB: BMRB REMARK 900 STRUCTURE OF N-TERMINAL OF SCHISTOSOMA JAPONICUM ASPARAGINYL-TRNA REMARK 900 SYNTHETASE DBREF 8FA3 A 1 114 UNP C1LGM4 C1LGM4_SCHJA 1 114 SEQADV 8FA3 HIS A 115 UNP C1LGM4 EXPRESSION TAG SEQADV 8FA3 HIS A 116 UNP C1LGM4 EXPRESSION TAG SEQADV 8FA3 HIS A 117 UNP C1LGM4 EXPRESSION TAG SEQADV 8FA3 HIS A 118 UNP C1LGM4 EXPRESSION TAG SEQADV 8FA3 HIS A 119 UNP C1LGM4 EXPRESSION TAG SEQADV 8FA3 HIS A 120 UNP C1LGM4 EXPRESSION TAG SEQRES 1 A 120 MET GLN ILE TYR THR SER GLU LYS ARG GLY SER ASP THR SEQRES 2 A 120 ALA GLY ASN GLY THR GLU GLU ALA PRO LEU LYS THR VAL SEQRES 3 A 120 LEU GLN ALA ILE VAL LYS LEU ASP GLY LYS ILE GLU ALA SEQRES 4 A 120 ASP THR ARG ILE TRP VAL ASP GLY THR GLY ASP GLU MET SEQRES 5 A 120 TRP ASP VAL VAL SER LYS SER LYS LEU LYS LYS ALA THR SEQRES 6 A 120 LYS GLN TYR HIS ILE GLN THR LYS LYS GLN GLU LYS ALA SEQRES 7 A 120 PRO HIS GLU LYS ILE VAL SER TYR GLU ASN GLY ASP ASN SEQRES 8 A 120 VAL ASN LEU SER GLU ALA ILE ASN VAL GLN LEU THR LEU SEQRES 9 A 120 ASP THR LYS LEU PRO GLU ALA LYS GLU LEU HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS HELIX 1 AA1 VAL A 26 VAL A 31 1 6 HELIX 2 AA2 SER A 57 THR A 72 1 16 SHEET 1 AA1 3 GLN A 2 TYR A 4 0 SHEET 2 AA1 3 ARG A 42 VAL A 45 1 O TRP A 44 N ILE A 3 SHEET 3 AA1 3 ASP A 54 VAL A 55 -1 O ASP A 54 N VAL A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1