HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-NOV-22 8FAH TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH SARS-COV-2 REACTIVE HUMAN ANTIBODY CR3022 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CR3022 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CR3022 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RECEPTOR BINDING DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_COMMON: SARS-COV-2, 2019-NCOV, COVID-19 VIRUS; SOURCE 19 ORGANISM_TAXID: 2697049; SOURCE 20 GENE: S, 2; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS VIRAL PROTEIN, IMMUNE SYSTEM, HUMAN ANTIBODY, SARS-COV-2, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SANKHALA,J.L.JENSEN,M.G.JOYCE REVDAT 3 14-FEB-24 8FAH 1 JRNL REVDAT 2 10-JAN-24 8FAH 1 JRNL REVDAT 1 13-DEC-23 8FAH 0 JRNL AUTH R.S.SANKHALA,V.DUSSUPT,W.H.CHEN,H.BAI,E.J.MARTINEZ, JRNL AUTH 2 J.L.JENSEN,P.A.REES,A.HAJDUCZKI,W.C.CHANG,M.CHOE,L.YAN, JRNL AUTH 3 S.L.STERLING,I.SWAFFORD,C.KUKLIS,S.SOMAN,J.KING,C.CORBITT, JRNL AUTH 4 M.ZEMIL,C.E.PETERSON,L.MENDEZ-RIVERA,S.M.TOWNSLEY, JRNL AUTH 5 G.C.DONOFRIO,K.G.LAL,U.TRAN,E.C.GREEN,C.SMITH,N.DE VAL, JRNL AUTH 6 E.D.LAING,C.C.BRODER,J.R.CURRIER,G.D.GROMOWSKI,L.WIECZOREK, JRNL AUTH 7 M.ROLLAND,D.PAQUIN-PROULX,D.VAN DYK,Z.BRITTON,S.RAJAN, JRNL AUTH 8 Y.M.LOO,P.M.MCTAMNEY,M.T.ESSER,V.R.POLONIS,N.L.MICHAEL, JRNL AUTH 9 S.J.KREBS,K.MODJARRAD,M.G.JOYCE JRNL TITL ANTIBODY TARGETING OF CONSERVED SITES OF VULNERABILITY ON JRNL TITL 2 THE SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN. JRNL REF STRUCTURE V. 32 131 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38157856 JRNL DOI 10.1016/J.STR.2023.11.015 REMARK 2 REMARK 2 RESOLUTION. 4.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 53.7 REMARK 3 NUMBER OF REFLECTIONS : 11132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.0900 - 5.3200 0.63 3073 169 0.2842 0.3254 REMARK 3 2 5.3200 - 4.8300 0.37 1818 92 0.2824 0.3284 REMARK 3 3 4.8300 - 4.4900 0.23 1099 59 0.2833 0.3814 REMARK 3 4 4.4900 - 4.2200 0.00 0 34 0.3237 0.4439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.054 768 REMARK 3 PLANARITY : 0.005 887 REMARK 3 DIHEDRAL : 6.132 707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.579 -29.066 9.656 REMARK 3 T TENSOR REMARK 3 T11: 0.5231 T22: 0.3070 REMARK 3 T33: 0.3707 T12: 0.0539 REMARK 3 T13: 0.1100 T23: -0.1807 REMARK 3 L TENSOR REMARK 3 L11: 0.7891 L22: 2.6479 REMARK 3 L33: 3.9817 L12: -0.3826 REMARK 3 L13: -0.0240 L23: -1.3456 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.2432 S13: 0.4301 REMARK 3 S21: -1.0247 S22: 0.8648 S23: -0.7554 REMARK 3 S31: 0.0532 S32: -0.5385 S33: 1.7750 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 80:136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.453 -24.540 22.977 REMARK 3 T TENSOR REMARK 3 T11: -0.4777 T22: 0.3266 REMARK 3 T33: 0.7422 T12: -0.5202 REMARK 3 T13: -0.0238 T23: -0.1451 REMARK 3 L TENSOR REMARK 3 L11: 1.2088 L22: 0.1318 REMARK 3 L33: 2.9110 L12: -0.4595 REMARK 3 L13: -2.1752 L23: 0.4416 REMARK 3 S TENSOR REMARK 3 S11: -0.4861 S12: 0.2971 S13: -0.3002 REMARK 3 S21: 0.1657 S22: -0.3345 S23: 0.0498 REMARK 3 S31: 1.2496 S32: 0.6408 S33: -1.6868 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 137:217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.922 -12.553 37.632 REMARK 3 T TENSOR REMARK 3 T11: 0.9795 T22: 0.5718 REMARK 3 T33: 0.6874 T12: -0.2041 REMARK 3 T13: 0.0984 T23: -0.1469 REMARK 3 L TENSOR REMARK 3 L11: 2.0706 L22: 0.4127 REMARK 3 L33: 1.1302 L12: 0.0754 REMARK 3 L13: 0.4490 L23: 0.6732 REMARK 3 S TENSOR REMARK 3 S11: 1.0529 S12: 0.3593 S13: 0.6258 REMARK 3 S21: 0.1997 S22: -0.2292 S23: -0.1158 REMARK 3 S31: -1.2457 S32: 0.4303 S33: 0.0889 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.495 -46.006 27.788 REMARK 3 T TENSOR REMARK 3 T11: 1.0961 T22: 0.8435 REMARK 3 T33: 0.9997 T12: 0.2010 REMARK 3 T13: -0.1087 T23: 0.3075 REMARK 3 L TENSOR REMARK 3 L11: 0.5058 L22: 1.5306 REMARK 3 L33: 0.6069 L12: 0.6671 REMARK 3 L13: 0.2034 L23: 0.3067 REMARK 3 S TENSOR REMARK 3 S11: 0.6052 S12: -0.2040 S13: -0.0327 REMARK 3 S21: -0.3703 S22: -0.5651 S23: -0.2150 REMARK 3 S31: -0.6062 S32: -0.0507 S33: 0.0263 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 39:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.999 -33.669 26.875 REMARK 3 T TENSOR REMARK 3 T11: 1.0102 T22: 0.9864 REMARK 3 T33: 0.9516 T12: 0.4085 REMARK 3 T13: -0.1777 T23: -0.2818 REMARK 3 L TENSOR REMARK 3 L11: 0.4952 L22: 0.1909 REMARK 3 L33: 0.6926 L12: 0.0515 REMARK 3 L13: -0.5606 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -1.2101 S13: 0.3156 REMARK 3 S21: 0.2019 S22: 0.9592 S23: 0.0176 REMARK 3 S31: -0.4962 S32: 0.6965 S33: 0.1452 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 68:116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.568 -39.401 30.949 REMARK 3 T TENSOR REMARK 3 T11: 0.9954 T22: 0.8253 REMARK 3 T33: 0.8631 T12: 0.2152 REMARK 3 T13: -0.2112 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.0707 L22: 1.5278 REMARK 3 L33: 0.5465 L12: 1.3411 REMARK 3 L13: -0.6799 L23: -0.7886 REMARK 3 S TENSOR REMARK 3 S11: -0.3136 S12: -0.6543 S13: -0.3268 REMARK 3 S21: -0.4938 S22: -0.1531 S23: 0.5846 REMARK 3 S31: 1.3075 S32: 0.4521 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN L AND RESID 117:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.991 -26.245 43.357 REMARK 3 T TENSOR REMARK 3 T11: 0.8820 T22: 0.6321 REMARK 3 T33: 0.7740 T12: -0.2081 REMARK 3 T13: -0.0928 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 0.7017 L22: 0.5229 REMARK 3 L33: 1.2327 L12: 0.3201 REMARK 3 L13: -0.7840 L23: -0.3938 REMARK 3 S TENSOR REMARK 3 S11: 0.6311 S12: -0.7272 S13: -0.4030 REMARK 3 S21: 0.3771 S22: -0.4537 S23: 0.1951 REMARK 3 S31: -0.1907 S32: 0.4212 S33: 0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN L AND RESID 179:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -92.233 -26.978 46.907 REMARK 3 T TENSOR REMARK 3 T11: 0.4482 T22: 0.2041 REMARK 3 T33: 0.8853 T12: 0.3547 REMARK 3 T13: 0.2305 T23: -0.1995 REMARK 3 L TENSOR REMARK 3 L11: 0.4524 L22: 0.7675 REMARK 3 L33: 0.9860 L12: 0.4487 REMARK 3 L13: -0.1207 L23: -0.6576 REMARK 3 S TENSOR REMARK 3 S11: 0.2640 S12: 0.2913 S13: 0.2042 REMARK 3 S21: 0.0117 S22: -0.7211 S23: -0.2289 REMARK 3 S31: 0.1708 S32: 0.1150 S33: -0.2782 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 332:358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.293 -37.103 -1.627 REMARK 3 T TENSOR REMARK 3 T11: 1.2031 T22: 1.1294 REMARK 3 T33: 1.1492 T12: -0.1382 REMARK 3 T13: 0.3380 T23: -0.1069 REMARK 3 L TENSOR REMARK 3 L11: 0.4414 L22: 0.4161 REMARK 3 L33: 0.2310 L12: -0.2982 REMARK 3 L13: -0.2723 L23: 0.0342 REMARK 3 S TENSOR REMARK 3 S11: 0.5004 S12: 0.5790 S13: 0.5870 REMARK 3 S21: -0.1678 S22: -0.0373 S23: -0.2585 REMARK 3 S31: 0.7185 S32: -0.5217 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 359:416 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.922 -36.383 4.166 REMARK 3 T TENSOR REMARK 3 T11: 1.0675 T22: 0.9948 REMARK 3 T33: 1.0820 T12: -0.0657 REMARK 3 T13: -0.1393 T23: -0.1757 REMARK 3 L TENSOR REMARK 3 L11: 1.0149 L22: -0.0091 REMARK 3 L33: -0.0023 L12: -0.2034 REMARK 3 L13: -0.0719 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.3080 S12: -0.2190 S13: -0.4605 REMARK 3 S21: -0.1847 S22: 0.7384 S23: 0.0393 REMARK 3 S31: -0.8745 S32: -0.5608 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 417:459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.420 -41.012 -10.502 REMARK 3 T TENSOR REMARK 3 T11: 1.2261 T22: 0.7979 REMARK 3 T33: 0.8632 T12: -0.1377 REMARK 3 T13: -0.0100 T23: -0.1663 REMARK 3 L TENSOR REMARK 3 L11: 0.6221 L22: 0.5101 REMARK 3 L33: 0.3873 L12: 0.4855 REMARK 3 L13: 0.3206 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.3508 S12: -0.3602 S13: 0.1775 REMARK 3 S21: 0.2823 S22: -0.8291 S23: 0.4326 REMARK 3 S31: -0.0771 S32: 0.2985 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN A AND RESID 460:469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.003 -52.366 -7.353 REMARK 3 T TENSOR REMARK 3 T11: 1.4408 T22: 1.2542 REMARK 3 T33: 0.7859 T12: -0.0885 REMARK 3 T13: 0.1171 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: -0.0036 REMARK 3 L33: 0.0153 L12: 0.0090 REMARK 3 L13: -0.0050 L23: 0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.4083 S12: -0.8925 S13: -1.0402 REMARK 3 S21: -0.2299 S22: 0.3074 S23: -0.0879 REMARK 3 S31: 0.3994 S32: 0.6241 S33: 0.0011 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN A AND RESID 470:494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.176 -56.161 -25.302 REMARK 3 T TENSOR REMARK 3 T11: 2.1297 T22: 0.6019 REMARK 3 T33: 0.7325 T12: 0.3239 REMARK 3 T13: -0.0158 T23: -0.6251 REMARK 3 L TENSOR REMARK 3 L11: 1.8420 L22: 1.3466 REMARK 3 L33: 0.7592 L12: 0.5108 REMARK 3 L13: 0.7542 L23: 0.4187 REMARK 3 S TENSOR REMARK 3 S11: -0.6325 S12: 0.1836 S13: 0.5675 REMARK 3 S21: -0.7908 S22: -0.0374 S23: 0.5608 REMARK 3 S31: 0.2329 S32: -0.1691 S33: -0.4183 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN A AND RESID 495:516 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.879 -34.181 -10.168 REMARK 3 T TENSOR REMARK 3 T11: 1.1449 T22: 0.6585 REMARK 3 T33: 1.0139 T12: 0.1563 REMARK 3 T13: 0.0349 T23: -0.3895 REMARK 3 L TENSOR REMARK 3 L11: 0.9102 L22: 0.9394 REMARK 3 L33: 0.4854 L12: 0.6105 REMARK 3 L13: -0.1481 L23: -0.5868 REMARK 3 S TENSOR REMARK 3 S11: -0.4322 S12: -0.2538 S13: -0.3527 REMARK 3 S21: 0.2754 S22: -0.4377 S23: -0.9217 REMARK 3 S31: -0.5666 S32: -0.4795 S33: -0.2413 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN A AND RESID 517:532 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.013 -41.322 18.375 REMARK 3 T TENSOR REMARK 3 T11: 1.4397 T22: 1.9796 REMARK 3 T33: 1.5096 T12: 0.0650 REMARK 3 T13: 0.0778 T23: 0.1639 REMARK 3 L TENSOR REMARK 3 L11: 0.2037 L22: 0.1222 REMARK 3 L33: 0.0116 L12: 0.1523 REMARK 3 L13: -0.0646 L23: -0.0407 REMARK 3 S TENSOR REMARK 3 S11: 1.1193 S12: -0.4593 S13: -0.0547 REMARK 3 S21: 0.9097 S22: 0.6084 S23: 0.1510 REMARK 3 S31: 0.1513 S32: 1.1888 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13814 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SUCCINIC ACID, 0.1M HEPES PH 7.0 REMARK 280 AND 2% PEG MME2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.46400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.23200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.69600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.46400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.69600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.23200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 218 REMARK 465 CYS L 214 REMARK 465 ASN A 331 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 54 -120.78 53.17 REMARK 500 SER H 70 164.61 177.99 REMARK 500 SER H 113 -6.32 75.84 REMARK 500 ALA L 51 8.98 59.51 REMARK 500 SER L 52 15.77 -141.94 REMARK 500 PHE L 98 -118.36 68.91 REMARK 500 ASN L 152 49.08 37.92 REMARK 500 CYS A 361 -166.75 -160.64 REMARK 500 ASP A 428 33.78 -92.74 REMARK 500 GLU A 484 141.55 -170.11 REMARK 500 ASN A 487 15.81 53.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FAH H 1 218 PDB 8FAH 8FAH 1 218 DBREF 8FAH L 1 214 PDB 8FAH 8FAH 1 214 DBREF 8FAH A 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 SEQADV 8FAH GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH SER A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8FAH HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 224 GLU VAL GLN LEU VAL GLN SER GLY THR GLU VAL LYS LYS SEQRES 2 H 224 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 224 TYR GLY PHE ILE THR TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 224 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 224 PRO GLY ASP SER GLU THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 224 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE ASN THR SEQRES 7 H 224 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 224 ALA ILE TYR TYR CYS ALA GLY GLY SER GLY ILE SER THR SEQRES 9 H 224 PRO MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 H 224 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 224 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 224 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 224 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 224 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 224 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 224 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 224 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 224 CYS ASP LYS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ILE ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR SER THR PRO TYR THR PHE SEQRES 9 L 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 205 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 205 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 205 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 205 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 205 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 205 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 205 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 205 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 205 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 205 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 205 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 205 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 205 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 205 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 205 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 205 GLY PRO GLY SER HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) HELIX 1 AA1 LYS H 83 THR H 87 5 5 HELIX 2 AA2 TRP L 50 SER L 52 5 3 HELIX 3 AA3 ASP L 122 LYS L 126 5 5 HELIX 4 AA4 LYS L 183 HIS L 189 1 7 HELIX 5 AA5 PRO A 337 PHE A 342 1 6 HELIX 6 AA6 SER A 349 TRP A 353 5 5 HELIX 7 AA7 ASP A 364 LEU A 368 5 5 HELIX 8 AA8 THR A 385 ASP A 389 5 5 HELIX 9 AA9 ASP A 405 VAL A 407 5 3 HELIX 10 AB1 GLY A 416 ASN A 422 1 7 HELIX 11 AB2 SER A 438 SER A 443 1 6 SHEET 1 AA1 3 GLN H 3 GLN H 6 0 SHEET 2 AA1 3 SER H 21 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 3 THR H 77 TYR H 79 -1 O ALA H 78 N CYS H 22 SHEET 1 AA2 4 GLY H 49 ILE H 51 0 SHEET 2 AA2 4 TRP H 33 GLN H 39 -1 N ILE H 34 O ILE H 51 SHEET 3 AA2 4 ILE H 89 GLY H 95 -1 O GLY H 95 N TRP H 33 SHEET 4 AA2 4 VAL H 102 TRP H 103 -1 O VAL H 102 N GLY H 94 SHEET 1 AA3 4 GLY H 49 ILE H 51 0 SHEET 2 AA3 4 TRP H 33 GLN H 39 -1 N ILE H 34 O ILE H 51 SHEET 3 AA3 4 ILE H 89 GLY H 95 -1 O GLY H 95 N TRP H 33 SHEET 4 AA3 4 THR H 107 THR H 108 -1 O THR H 107 N TYR H 90 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 VAL H 152 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 GLN L 6 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA8 4 THR L 53 ARG L 54 0 SHEET 2 AA8 4 LYS L 45 TYR L 49 -1 N TYR L 49 O THR L 53 SHEET 3 AA8 4 LEU L 33 GLN L 38 -1 N GLN L 37 O LYS L 45 SHEET 4 AA8 4 VAL L 85 GLN L 90 -1 O GLN L 89 N ALA L 34 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB1 3 VAL L 146 GLN L 147 0 SHEET 2 AB1 3 GLU L 195 VAL L 196 -1 O GLU L 195 N GLN L 147 SHEET 3 AB1 3 VAL L 205 THR L 206 -1 O VAL L 205 N VAL L 196 SHEET 1 AB2 2 LYS L 149 VAL L 150 0 SHEET 2 AB2 2 ALA L 153 LEU L 154 -1 O ALA L 153 N VAL L 150 SHEET 1 AB3 2 VAL L 191 TYR L 192 0 SHEET 2 AB3 2 PHE L 209 ASN L 210 -1 O PHE L 209 N TYR L 192 SHEET 1 AB4 5 ASN A 354 ILE A 358 0 SHEET 2 AB4 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AB4 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AB4 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AB4 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AB5 3 CYS A 361 VAL A 362 0 SHEET 2 AB5 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AB5 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AB6 2 LEU A 452 ARG A 454 0 SHEET 2 AB6 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AB7 2 TYR A 473 GLN A 474 0 SHEET 2 AB7 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.02 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS A 336 CYS A 361 1555 1555 2.02 SSBOND 6 CYS A 379 CYS A 432 1555 1555 2.04 SSBOND 7 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 8 CYS A 480 CYS A 488 1555 1555 2.02 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 CRYST1 151.176 151.176 192.928 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005183 0.00000