HEADER VIRAL PROTEIN 28-NOV-22 8FAW TITLE STRUCTURE OF HEMAGGLUTININ FROM INFLUENZA A/VICTORIA/22/2020 IN TITLE 2 COMPLEX WITH LSTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/VICTORIA/22/2020; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL: SF9 KEYWDS INFLUENZA A HEMAGGLUTININ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HERNANDEZ GARCIA,R.LEI REVDAT 1 19-JUN-24 8FAW 0 JRNL AUTH A.HERNANDEZ GARCIA,R.LEI,S.K.NAIR,N.WU JRNL TITL STRUCTURE OF HEMAGGLUTININ FROM INFLUENZA A/VICTORIA/22/2020 JRNL TITL 2 IN COMPLEX WITH LSTC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 38014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3857 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.324 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4105 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5578 ; 1.505 ; 1.695 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 6.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;33.757 ;22.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;15.912 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3077 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1950 ; 3.705 ; 4.889 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2434 ; 4.917 ; 7.321 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2153 ; 4.914 ; 5.424 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6029 ; 7.928 ;67.841 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 84.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 21.30 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG-200, 0.1M CITRATE PH 5.5, REMARK 280 FINAL PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.17450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.96826 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 131.83433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.17450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.96826 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 131.83433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.17450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.96826 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 131.83433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.17450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.96826 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 131.83433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.17450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.96826 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.83433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.17450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.96826 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 131.83433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.93652 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 263.66867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.93652 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 263.66867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.93652 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 263.66867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.93652 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 263.66867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.93652 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 263.66867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.93652 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 263.66867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.17450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -86.90478 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.17450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -86.90478 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG A 601 O HOH A 701 1.99 REMARK 500 ND2 ASN A 483 O HOH A 702 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 42.01 -146.42 REMARK 500 CYS A 97 -153.10 -139.53 REMARK 500 ASN A 133 30.40 70.06 REMARK 500 ARG A 141 -81.72 -96.29 REMARK 500 SER A 143 -25.70 82.20 REMARK 500 TYR A 159 18.45 52.67 REMARK 500 ALA A 163 133.45 -35.21 REMARK 500 ASN A 165 85.55 -159.99 REMARK 500 GLN A 197 135.97 -170.55 REMARK 500 SER A 199 -96.54 -71.89 REMARK 500 ASN A 250 1.61 88.46 REMARK 500 ALA A 334 -69.49 -91.31 REMARK 500 PHE A 392 -113.57 -118.58 REMARK 500 GLN A 394 -150.55 -119.45 REMARK 500 ARG A 456 -125.92 50.18 REMARK 500 TYR A 470 37.27 -94.68 REMARK 500 ASP A 474 -177.87 -68.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8FAQ RELATED DB: PDB REMARK 900 8FAQ CONTAINS THIS UNCOMOPLEXED PROTEIN DBREF1 8FAW A 11 502 UNP A0A6M4ZXR4_9INFA DBREF2 8FAW A A0A6M4ZXR4 27 518 SEQADV 8FAW ILE A 54 UNP A0A6M4ZXR SER 70 CONFLICT SEQRES 1 A 492 ALA THR LEU CYS LEU GLY HIS HIS ALA VAL PRO ASN GLY SEQRES 2 A 492 THR ILE VAL LYS THR ILE THR ASN ASP ARG ILE GLU VAL SEQRES 3 A 492 THR ASN ALA THR GLU LEU VAL GLN ASN SER SER ILE GLY SEQRES 4 A 492 GLU ILE CYS ASP ILE PRO HIS GLN ILE LEU ASP GLY GLY SEQRES 5 A 492 ASN CYS THR LEU ILE ASP ALA LEU LEU GLY ASP PRO GLN SEQRES 6 A 492 CYS ASP GLY PHE GLN ASN LYS LYS TRP ASP LEU PHE VAL SEQRES 7 A 492 GLU ARG SER ARG ALA TYR SER ASN CYS TYR PRO TYR ASP SEQRES 8 A 492 VAL PRO ASP TYR ALA SER LEU ARG SER LEU VAL ALA SER SEQRES 9 A 492 SER GLY THR LEU GLU PHE LYS ASN GLU SER PHE ASN TRP SEQRES 10 A 492 ALA GLY VAL THR GLN ASN GLY LYS SER SER SER CYS ILE SEQRES 11 A 492 ARG GLY SER SER SER SER PHE PHE SER ARG LEU ASN TRP SEQRES 12 A 492 LEU THR HIS LEU ASN TYR THR TYR PRO ALA LEU ASN VAL SEQRES 13 A 492 THR MET PRO ASN LYS GLU GLN PHE ASP LYS LEU TYR ILE SEQRES 14 A 492 TRP GLY VAL HIS HIS PRO ASP THR ASP LYS ASN GLN ILE SEQRES 15 A 492 SER LEU TYR ALA GLN PRO SER GLY ARG ILE THR VAL SER SEQRES 16 A 492 THR LYS ARG SER GLN GLN ALA VAL ILE PRO ASN ILE GLY SEQRES 17 A 492 SER ARG PRO ARG ILE ARG ASP ILE PRO SER ARG ILE SER SEQRES 18 A 492 ILE TYR TRP THR ILE VAL LYS PRO GLY ASP ILE LEU LEU SEQRES 19 A 492 ILE ASN SER THR GLY ASN LEU ILE ALA PRO ARG GLY TYR SEQRES 20 A 492 PHE LYS ILE ARG SER GLY LYS SER SER ILE MET ARG SER SEQRES 21 A 492 ASP ALA PRO ILE GLY LYS CYS LYS SER GLU CYS ILE THR SEQRES 22 A 492 PRO ASN GLY SER ILE PRO ASN ASP LYS PRO PHE GLN ASN SEQRES 23 A 492 VAL ASN ARG ILE THR TYR GLY ALA CYS PRO ARG TYR VAL SEQRES 24 A 492 LYS GLN SER THR LEU LYS LEU ALA THR GLY MET ARG ASN SEQRES 25 A 492 VAL PRO GLU LYS GLN THR ARG GLY ILE PHE GLY ALA ILE SEQRES 26 A 492 ALA GLY PHE ILE GLU ASN GLY TRP GLU GLY MET VAL ASP SEQRES 27 A 492 GLY TRP TYR GLY PHE ARG HIS GLN ASN SER GLU GLY ARG SEQRES 28 A 492 GLY GLN ALA ALA ASP LEU LYS SER THR GLN ALA ALA ILE SEQRES 29 A 492 ASP GLN ILE ASN GLY LYS LEU ASN ARG LEU ILE GLY LYS SEQRES 30 A 492 THR ASN GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 31 A 492 GLU VAL GLU GLY ARG VAL GLN ASP LEU GLU LYS TYR VAL SEQRES 32 A 492 GLU ASP THR LYS ILE ASP LEU TRP SER TYR ASN ALA GLU SEQRES 33 A 492 LEU LEU VAL ALA LEU GLU ASN GLN HIS THR ILE ASP LEU SEQRES 34 A 492 THR ASP SER GLU MET ASN LYS LEU PHE GLU LYS THR LYS SEQRES 35 A 492 LYS GLN LEU ARG GLU ASN ALA GLU ASP MET GLY ASN GLY SEQRES 36 A 492 CYS PHE LYS ILE TYR HIS LYS CYS ASP ASN ALA CYS ILE SEQRES 37 A 492 GLY SER ILE ARG ASN GLU THR TYR ASP HIS ASN VAL TYR SEQRES 38 A 492 ARG ASP GLU ALA LEU ASN ASN ARG PHE GLN ILE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BGC D 1 12 HET GAL D 2 11 HET NAG D 3 14 HET GAL D 4 11 HET SIA D 5 20 HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 4 BGC C6 H12 O6 FORMUL 4 GAL 2(C6 H12 O6) FORMUL 4 SIA C11 H19 N O9 FORMUL 7 HOH *114(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 THR A 187 ALA A 196 1 10 HELIX 5 AA5 LEU A 367 ILE A 385 1 19 HELIX 6 AA6 GLY A 404 ARG A 456 1 53 HELIX 7 AA7 ASP A 474 ASN A 483 1 10 HELIX 8 AA8 ASP A 487 PHE A 500 1 14 SHEET 1 AA1 5 GLY A 360 ASP A 366 0 SHEET 2 AA1 5 TYR A 351 ASN A 357 -1 N TYR A 351 O ASP A 366 SHEET 3 AA1 5 THR A 12 HIS A 17 -1 N CYS A 14 O ARG A 354 SHEET 4 AA1 5 CYS A 466 ILE A 469 -1 O PHE A 467 N LEU A 13 SHEET 5 AA1 5 ALA A 459 ASP A 461 -1 N GLU A 460 O LYS A 468 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O ILE A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 ILE A 54 0 SHEET 2 AA5 2 ILE A 274 LYS A 278 1 O GLY A 275 N ILE A 51 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O SER A 266 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 ASN A 122 -1 N LYS A 121 O TYR A 257 SHEET 1 AA8 5 TYR A 100 ASP A 101 0 SHEET 2 AA8 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA8 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AA9 2 SER A 136 ILE A 140 0 SHEET 2 AA9 2 SER A 145 SER A 146 -1 O SER A 146 N CYS A 139 SHEET 1 AB1 4 LEU A 164 PRO A 169 0 SHEET 2 AB1 4 ILE A 242 SER A 247 -1 O SER A 247 N LEU A 164 SHEET 3 AB1 4 ILE A 202 SER A 205 -1 N THR A 203 O ASN A 246 SHEET 4 AB1 4 GLN A 210 VAL A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AB2 4 GLY A 286 ILE A 288 0 SHEET 2 AB2 4 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB2 4 TYR A 302 CYS A 305 -1 O TYR A 302 N ILE A 282 SHEET 4 AB2 4 ASN A 389 LYS A 391 -1 O LYS A 391 N GLY A 303 SSBOND 1 CYS A 14 CYS A 466 1555 1555 2.12 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.17 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.14 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.14 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.09 SSBOND 6 CYS A 473 CYS A 477 1555 1555 2.18 LINK ND2 ASN A 63 C1 NAG A 602 1555 1555 1.43 LINK ND2 ASN A 165 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 246 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 285 C1 NAG A 601 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 BGC D 1 C1 GAL D 2 1555 1555 1.40 LINK O3 GAL D 2 C1 NAG D 3 1555 1555 1.39 LINK O4 NAG D 3 C1 GAL D 4 1555 1555 1.39 LINK O6 GAL D 4 C2 SIA D 5 1555 1555 1.47 CISPEP 1 ILE A 54 PRO A 55 0 1.52 CRYST1 100.349 100.349 395.503 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009965 0.005753 0.000000 0.00000 SCALE2 0.000000 0.011507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002528 0.00000