HEADER TRANSFERASE 29-NOV-22 8FBG
TITLE CRYSTAL STRUCTURE OF NSD1 MUTANT-Y1869C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: H3-K36-HMTASE,NUCLEAR RECEPTOR-BINDING SET DOMAIN-CONTAINING
COMPND 5 PROTEIN 1,NR-BINDING SET DOMAIN-CONTAINING PROTEIN;
COMPND 6 EC: 2.1.1.357;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: NSD1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL
KEYWDS NSD1, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC,
KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.PROVIDOKHINA,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL
AUTHOR 2 GENOMICS CONSORTIUM (SGC)
REVDAT 2 25-OCT-23 8FBG 1 REMARK
REVDAT 1 18-JAN-23 8FBG 0
JRNL AUTH K.PROVIDOKHINA,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,
JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC)
JRNL TITL CRYSTAL STRUCTURE OF NSD1
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.29 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.09
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7
REMARK 3 NUMBER OF REFLECTIONS : 19076
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.217
REMARK 3 R VALUE (WORKING SET) : 0.214
REMARK 3 FREE R VALUE : 0.271
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710
REMARK 3 FREE R VALUE TEST SET COUNT : 899
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 44
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.32
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 434
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4079
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 408
REMARK 3 BIN R VALUE (WORKING SET) : 0.4065
REMARK 3 BIN FREE R VALUE : 0.4286
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.99
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3320
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 65
REMARK 3 SOLVENT ATOMS : 170
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 38.79
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.58
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -3.42300
REMARK 3 B22 (A**2) : 3.97160
REMARK 3 B33 (A**2) : -0.54860
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 1.95210
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.435
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.269
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.425
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.270
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3454 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4688 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1191 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 627 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3454 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 461 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3977 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.09
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.15
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.94
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 8.4393 -7.8922 7.8000
REMARK 3 T TENSOR
REMARK 3 T11: -0.0012 T22: -0.0895
REMARK 3 T33: -0.1393 T12: -0.0240
REMARK 3 T13: 0.0234 T23: 0.0084
REMARK 3 L TENSOR
REMARK 3 L11: 1.8481 L22: 1.4996
REMARK 3 L33: 0.9959 L12: -0.8397
REMARK 3 L13: 0.5231 L23: -0.4224
REMARK 3 S TENSOR
REMARK 3 S11: 0.0013 S12: -0.0119 S13: 0.0528
REMARK 3 S21: -0.0172 S22: -0.0670 S23: -0.0534
REMARK 3 S31: -0.0472 S32: -0.0530 S33: 0.0657
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 6.3011 23.7832 32.9052
REMARK 3 T TENSOR
REMARK 3 T11: -0.0176 T22: -0.0651
REMARK 3 T33: -0.0668 T12: 0.0321
REMARK 3 T13: -0.0167 T23: 0.0119
REMARK 3 L TENSOR
REMARK 3 L11: 1.4171 L22: 1.0196
REMARK 3 L33: 0.7229 L12: 0.2946
REMARK 3 L13: -0.6158 L23: -0.1752
REMARK 3 S TENSOR
REMARK 3 S11: -0.0200 S12: 0.0477 S13: -0.1091
REMARK 3 S21: -0.0796 S22: -0.0152 S23: 0.0139
REMARK 3 S31: 0.0039 S32: 0.0348 S33: 0.0352
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8FBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-22.
REMARK 100 THE DEPOSITION ID IS D_1000268669.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-JUN-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19253
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7
REMARK 200 DATA REDUNDANCY : 4.100
REMARK 200 R MERGE (I) : 0.11300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8
REMARK 200 DATA REDUNDANCY IN SHELL : 4.00
REMARK 200 R MERGE FOR SHELL (I) : 0.77100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.8.3
REMARK 200 STARTING MODEL: 3OOI
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.96
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% P3350, 0.2M KCL, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.47350
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 1749
REMARK 465 LYS A 1750
REMARK 465 GLU A 1751
REMARK 465 LEU A 1752
REMARK 465 ARG A 1753
REMARK 465 GLN A 1754
REMARK 465 LEU A 1755
REMARK 465 GLN A 1756
REMARK 465 GLU A 1757
REMARK 465 ASP A 1758
REMARK 465 ARG A 1759
REMARK 465 LYS A 1760
REMARK 465 ASN A 1761
REMARK 465 ASP A 1762
REMARK 465 LYS A 1763
REMARK 465 GLY B 1749
REMARK 465 LYS B 1750
REMARK 465 GLU B 1751
REMARK 465 LEU B 1752
REMARK 465 ARG B 1753
REMARK 465 GLN B 1754
REMARK 465 LEU B 1755
REMARK 465 GLN B 1756
REMARK 465 GLU B 1757
REMARK 465 ASP B 1758
REMARK 465 ARG B 1759
REMARK 465 LYS B 1760
REMARK 465 ASN B 1761
REMARK 465 ASP B 1762
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A1764 CG CD CE NZ
REMARK 470 ARG A1779 CD NE CZ NH1 NH2
REMARK 470 ILE A1782 CD1
REMARK 470 SER A1788 OG
REMARK 470 GLU A1789 CG CD OE1 OE2
REMARK 470 LYS A1796 CG CD CE NZ
REMARK 470 ILE A1810 CD1
REMARK 470 LYS A1836 CE NZ
REMARK 470 GLU A1841 CD OE1 OE2
REMARK 470 LYS A1861 CG CD CE NZ
REMARK 470 ARG A1880 CG CD NE CZ NH1 NH2
REMARK 470 GLU A1888 CG CD OE1 OE2
REMARK 470 LYS A1901 CG CD CE NZ
REMARK 470 LYS A1929 NZ
REMARK 470 LEU A1958 CG CD1 CD2
REMARK 470 LYS A1965 CG CD CE NZ
REMARK 470 PHE A1978 CD1 CD2 CE1 CE2 CZ
REMARK 470 LYS B1763 CG CD CE NZ
REMARK 470 LYS B1764 CG CD CE NZ
REMARK 470 HIS B1770 CG ND1 CD2 CE1 NE2
REMARK 470 ARG B1779 CG CD NE CZ NH1 NH2
REMARK 470 GLN B1781 CD OE1 NE2
REMARK 470 LEU B1787 CG CD1 CD2
REMARK 470 SER B1788 OG
REMARK 470 ARG B1792 NH1 NH2
REMARK 470 ASP B1806 CG OD1 OD2
REMARK 470 ILE B1810 CD1
REMARK 470 VAL B1822 CG1 CG2
REMARK 470 ARG B1880 NH1 NH2
REMARK 470 ARG B1884 NE CZ NH1 NH2
REMARK 470 GLN B1887 CD OE1 NE2
REMARK 470 ILE B1891 CD1
REMARK 470 LYS B1901 CG CD CE NZ
REMARK 470 LYS B1947 CD CE NZ
REMARK 470 GLU B1959 CD OE1 OE2
REMARK 470 LYS B1965 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A1957 -128.93 52.79
REMARK 500 GLU B1808 67.31 -103.97
REMARK 500 GLN B1832 34.25 -140.86
REMARK 500 ASP B1900 -162.14 -166.48
REMARK 500 ASN B1957 -121.37 52.37
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A3002 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1793 SG
REMARK 620 2 CYS A1795 SG 111.6
REMARK 620 3 CYS A1803 SG 107.3 100.0
REMARK 620 4 CYS A1809 SG 109.5 115.1 112.9
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A3003 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1803 SG
REMARK 620 2 CYS A1818 SG 103.8
REMARK 620 3 CYS A1823 SG 98.5 98.9
REMARK 620 4 CYS A1829 SG 123.4 108.9 119.8
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A3001 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1921 SG
REMARK 620 2 CYS A1968 SG 115.6
REMARK 620 3 CYS A1970 SG 110.1 107.7
REMARK 620 4 CYS A1975 SG 104.3 105.4 113.7
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B3002 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B1793 SG
REMARK 620 2 CYS B1795 SG 109.0
REMARK 620 3 CYS B1803 SG 107.2 99.7
REMARK 620 4 CYS B1809 SG 116.5 111.5 111.4
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B3004 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B1793 SG
REMARK 620 2 CYS B1818 SG 117.8
REMARK 620 3 CYS B1823 SG 98.2 94.6
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B3003 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B1803 SG
REMARK 620 2 CYS B1818 SG 105.3
REMARK 620 3 CYS B1823 SG 104.8 100.1
REMARK 620 4 CYS B1829 SG 119.1 104.5 120.4
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B3001 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B1921 SG
REMARK 620 2 CYS B1968 SG 113.1
REMARK 620 3 CYS B1970 SG 112.1 104.5
REMARK 620 4 CYS B1975 SG 110.8 107.8 108.3
REMARK 620 N 1 2 3
DBREF 8FBG A 1750 1980 UNP O88491 NSD1_MOUSE 1750 1980
DBREF 8FBG B 1750 1980 UNP O88491 NSD1_MOUSE 1750 1980
SEQADV 8FBG GLY A 1749 UNP O88491 EXPRESSION TAG
SEQADV 8FBG GLY A 1827 UNP O88491 VAL 1827 CONFLICT
SEQADV 8FBG GLU A 1841 UNP O88491 ASP 1841 CONFLICT
SEQADV 8FBG CYS A 1869 UNP O88491 TYR 1869 ENGINEERED MUTATION
SEQADV 8FBG GLY B 1749 UNP O88491 EXPRESSION TAG
SEQADV 8FBG GLY B 1827 UNP O88491 VAL 1827 CONFLICT
SEQADV 8FBG GLU B 1841 UNP O88491 ASP 1841 CONFLICT
SEQADV 8FBG CYS B 1869 UNP O88491 TYR 1869 ENGINEERED MUTATION
SEQRES 1 A 232 GLY LYS GLU LEU ARG GLN LEU GLN GLU ASP ARG LYS ASN
SEQRES 2 A 232 ASP LYS LYS PRO PRO PRO TYR LYS HIS ILE LYS VAL ASN
SEQRES 3 A 232 ARG PRO ILE GLY ARG VAL GLN ILE PHE THR ALA ASP LEU
SEQRES 4 A 232 SER GLU ILE PRO ARG CYS ASN CYS LYS ALA THR ASP GLU
SEQRES 5 A 232 ASN PRO CYS GLY ILE ASP SER GLU CYS ILE ASN ARG MET
SEQRES 6 A 232 LEU LEU TYR GLU CYS HIS PRO THR VAL CYS PRO ALA GLY
SEQRES 7 A 232 GLY ARG CYS GLN ASN GLN CYS PHE SER LYS ARG GLN TYR
SEQRES 8 A 232 PRO GLU VAL GLU ILE PHE ARG THR LEU GLN ARG GLY TRP
SEQRES 9 A 232 GLY LEU ARG THR LYS THR ASP ILE LYS LYS GLY GLU PHE
SEQRES 10 A 232 VAL ASN GLU CYS VAL GLY GLU LEU ILE ASP GLU GLU GLU
SEQRES 11 A 232 CYS ARG ALA ARG ILE ARG TYR ALA GLN GLU HIS ASP ILE
SEQRES 12 A 232 THR ASN PHE TYR MET LEU THR LEU ASP LYS ASP ARG ILE
SEQRES 13 A 232 ILE ASP ALA GLY PRO LYS GLY ASN TYR ALA ARG PHE MET
SEQRES 14 A 232 ASN HIS CYS CYS GLN PRO ASN CYS GLU THR GLN LYS TRP
SEQRES 15 A 232 SER VAL ASN GLY ASP THR ARG VAL GLY LEU PHE ALA LEU
SEQRES 16 A 232 SER ASP ILE LYS ALA GLY THR GLU LEU THR PHE ASN TYR
SEQRES 17 A 232 ASN LEU GLU CYS LEU GLY ASN GLY LYS THR VAL CYS LYS
SEQRES 18 A 232 CYS GLY ALA PRO ASN CYS SER GLY PHE LEU GLY
SEQRES 1 B 232 GLY LYS GLU LEU ARG GLN LEU GLN GLU ASP ARG LYS ASN
SEQRES 2 B 232 ASP LYS LYS PRO PRO PRO TYR LYS HIS ILE LYS VAL ASN
SEQRES 3 B 232 ARG PRO ILE GLY ARG VAL GLN ILE PHE THR ALA ASP LEU
SEQRES 4 B 232 SER GLU ILE PRO ARG CYS ASN CYS LYS ALA THR ASP GLU
SEQRES 5 B 232 ASN PRO CYS GLY ILE ASP SER GLU CYS ILE ASN ARG MET
SEQRES 6 B 232 LEU LEU TYR GLU CYS HIS PRO THR VAL CYS PRO ALA GLY
SEQRES 7 B 232 GLY ARG CYS GLN ASN GLN CYS PHE SER LYS ARG GLN TYR
SEQRES 8 B 232 PRO GLU VAL GLU ILE PHE ARG THR LEU GLN ARG GLY TRP
SEQRES 9 B 232 GLY LEU ARG THR LYS THR ASP ILE LYS LYS GLY GLU PHE
SEQRES 10 B 232 VAL ASN GLU CYS VAL GLY GLU LEU ILE ASP GLU GLU GLU
SEQRES 11 B 232 CYS ARG ALA ARG ILE ARG TYR ALA GLN GLU HIS ASP ILE
SEQRES 12 B 232 THR ASN PHE TYR MET LEU THR LEU ASP LYS ASP ARG ILE
SEQRES 13 B 232 ILE ASP ALA GLY PRO LYS GLY ASN TYR ALA ARG PHE MET
SEQRES 14 B 232 ASN HIS CYS CYS GLN PRO ASN CYS GLU THR GLN LYS TRP
SEQRES 15 B 232 SER VAL ASN GLY ASP THR ARG VAL GLY LEU PHE ALA LEU
SEQRES 16 B 232 SER ASP ILE LYS ALA GLY THR GLU LEU THR PHE ASN TYR
SEQRES 17 B 232 ASN LEU GLU CYS LEU GLY ASN GLY LYS THR VAL CYS LYS
SEQRES 18 B 232 CYS GLY ALA PRO ASN CYS SER GLY PHE LEU GLY
HET ZN A3001 1
HET ZN A3002 1
HET ZN A3003 1
HET CA A3004 1
HET SAM A3005 27
HET CA A3006 1
HET ZN B3001 1
HET ZN B3002 1
HET ZN B3003 1
HET ZN B3004 1
HET SAM B3005 27
HET CA B3006 1
HET CA B3007 1
HETNAM ZN ZINC ION
HETNAM CA CALCIUM ION
HETNAM SAM S-ADENOSYLMETHIONINE
FORMUL 3 ZN 7(ZN 2+)
FORMUL 6 CA 4(CA 2+)
FORMUL 7 SAM 2(C15 H22 N6 O5 S)
FORMUL 16 HOH *170(H2 O)
HELIX 1 AA1 ASP A 1786 ILE A 1790 5 5
HELIX 2 AA2 CYS A 1809 LEU A 1814 1 6
HELIX 3 AA3 ALA A 1825 CYS A 1829 5 5
HELIX 4 AA4 GLN A 1832 ARG A 1837 1 6
HELIX 5 AA5 ASP A 1875 HIS A 1889 1 15
HELIX 6 AA6 ASN A 1912 MET A 1917 5 6
HELIX 7 AA7 CYS B 1809 LEU B 1814 1 6
HELIX 8 AA8 ALA B 1825 CYS B 1829 5 5
HELIX 9 AA9 GLN B 1832 ARG B 1837 1 6
HELIX 10 AB1 ASP B 1875 HIS B 1889 1 15
HELIX 11 AB2 TYR B 1913 MET B 1917 5 5
SHEET 1 AA1 2 LYS A1769 HIS A1770 0
SHEET 2 AA1 2 LYS A1910 GLY A1911 1 O GLY A1911 N LYS A1769
SHEET 1 AA2 4 ARG A1775 PRO A1776 0
SHEET 2 AA2 4 GLU A1872 ILE A1874 1 O LEU A1873 N ARG A1775
SHEET 3 AA2 4 ILE A1904 ASP A1906 -1 O ASP A1906 N GLU A1872
SHEET 4 AA2 4 MET A1896 THR A1898 -1 N LEU A1897 O ILE A1905
SHEET 1 AA3 2 VAL A1842 ARG A1846 0
SHEET 2 AA3 2 TRP A1852 THR A1856 -1 O ARG A1855 N GLU A1843
SHEET 1 AA4 3 PHE A1865 GLU A1868 0
SHEET 2 AA4 3 THR A1936 ALA A1942 -1 O LEU A1940 N VAL A1866
SHEET 3 AA4 3 CYS A1925 SER A1931 -1 N TRP A1930 O ARG A1937
SHEET 1 AA5 2 ASN A1918 HIS A1919 0
SHEET 2 AA5 2 THR A1953 PHE A1954 1 O PHE A1954 N ASN A1918
SHEET 1 AA6 4 LYS B1769 HIS B1770 0
SHEET 2 AA6 4 ARG B1903 GLY B1911 1 O PRO B1909 N LYS B1769
SHEET 3 AA6 4 GLY B1871 ILE B1874 -1 N ILE B1874 O ILE B1904
SHEET 4 AA6 4 ARG B1775 PRO B1776 1 N ARG B1775 O GLY B1871
SHEET 1 AA7 3 LYS B1769 HIS B1770 0
SHEET 2 AA7 3 ARG B1903 GLY B1911 1 O PRO B1909 N LYS B1769
SHEET 3 AA7 3 MET B1896 ASP B1900 -1 N LEU B1897 O ILE B1905
SHEET 1 AA8 2 VAL B1842 ARG B1846 0
SHEET 2 AA8 2 TRP B1852 THR B1856 -1 O GLY B1853 N PHE B1845
SHEET 1 AA9 3 PHE B1865 GLU B1868 0
SHEET 2 AA9 3 ASP B1935 ALA B1942 -1 O LEU B1940 N ASN B1867
SHEET 3 AA9 3 CYS B1925 VAL B1932 -1 N TRP B1930 O ARG B1937
SHEET 1 AB1 2 ASN B1918 HIS B1919 0
SHEET 2 AB1 2 THR B1953 PHE B1954 1 O PHE B1954 N ASN B1918
LINK SG CYS A1793 ZN ZN A3002 1555 1555 2.46
LINK SG CYS A1795 ZN ZN A3002 1555 1555 2.46
LINK SG CYS A1803 ZN ZN A3002 1555 1555 2.37
LINK SG CYS A1803 ZN ZN A3003 1555 1555 2.40
LINK SG CYS A1809 ZN ZN A3002 1555 1555 2.35
LINK SG CYS A1818 ZN ZN A3003 1555 1555 2.66
LINK SG CYS A1823 ZN ZN A3003 1555 1555 2.27
LINK SG CYS A1829 ZN ZN A3003 1555 1555 2.26
LINK SG CYS A1921 ZN ZN A3001 1555 1555 2.49
LINK SG CYS A1968 ZN ZN A3001 1555 1555 2.28
LINK SG CYS A1970 ZN ZN A3001 1555 1555 2.31
LINK SG CYS A1975 ZN ZN A3001 1555 1555 2.34
LINK SG CYS B1793 ZN ZN B3002 1555 1555 2.37
LINK SG CYS B1793 ZN ZN B3004 1555 1555 2.30
LINK SG CYS B1795 ZN ZN B3002 1555 1555 2.63
LINK SG CYS B1803 ZN ZN B3002 1555 1555 2.52
LINK SG CYS B1803 ZN ZN B3003 1555 1555 2.25
LINK SG CYS B1809 ZN ZN B3002 1555 1555 2.30
LINK SG CYS B1818 ZN ZN B3003 1555 1555 2.50
LINK SG CYS B1818 ZN ZN B3004 1555 1555 2.41
LINK SG CYS B1823 ZN ZN B3003 1555 1555 2.33
LINK SG CYS B1823 ZN ZN B3004 1555 1555 2.63
LINK SG CYS B1829 ZN ZN B3003 1555 1555 2.15
LINK SG CYS B1921 ZN ZN B3001 1555 1555 2.36
LINK SG CYS B1968 ZN ZN B3001 1555 1555 2.31
LINK SG CYS B1970 ZN ZN B3001 1555 1555 2.44
LINK SG CYS B1975 ZN ZN B3001 1555 1555 2.35
CRYST1 42.449 64.947 81.408 90.00 93.17 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023558 0.000000 0.001305 0.00000
SCALE2 0.000000 0.015397 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012303 0.00000